Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 0.0e+00 1116.7 613 100.0
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 7.2e-145 518.5 616 50.6
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 3.8e-138 496.1 592 50.2
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 1.9e-137 493.8 585 50.4
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 9.1e-132 474.9 594 47.8
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 1.3e-130 471.1 579 49.2
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 2.7e-128 463.4 601 48.6
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 3.6e-128 463.0 585 47.9
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 1.0e-127 461.5 578 47.8
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 1.0e-127 461.5 613 46.3
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 1.0e-127 461.5 596 47.5
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 5.2e-127 459.1 580 49.1
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 6.7e-127 458.8 581 46.8
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 6.7e-127 458.8 613 46.2
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 8.8e-127 458.4 612 46.7
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 1.1e-126 458.0 597 47.6
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 2.6e-126 456.8 600 45.3
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 4.4e-126 456.1 578 46.5
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 5.7e-126 455.7 604 47.2
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 2.2e-125 453.8 599 46.2
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 2.4e-124 450.3 606 45.4
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 5.3e-124 449.1 596 47.0
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 5.3e-124 449.1 601 46.1
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 3.5e-123 446.4 588 46.3
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 1.7e-122 444.1 605 45.1
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 1.7e-122 444.1 585 46.2
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 2.2e-122 443.7 605 45.5
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 8.5e-122 441.8 599 43.9
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 8.5e-122 441.8 596 46.1
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 3.2e-121 439.9 605 47.1
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 5.5e-121 439.1 593 47.0
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 7.2e-121 438.7 605 44.8
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 8.0e-120 435.3 601 47.8
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.8e-119 434.1 582 45.5
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 3.0e-119 433.3 604 44.0
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 4.0e-119 433.0 617 48.1
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 2.0e-118 430.6 592 45.6
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 9.8e-118 428.3 609 45.8
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 1.3e-117 427.9 599 44.2
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 1.3e-117 427.9 614 44.1
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 4.8e-117 426.0 609 44.3
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 9.1e-116 421.8 623 43.2
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 9.1e-116 421.8 585 46.0
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 4.5e-115 419.5 611 44.2
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 7.7e-115 418.7 582 44.3
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 1.7e-114 417.5 583 44.4
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.7e-114 417.5 582 44.2
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 2.9e-114 416.8 603 43.1
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 5.0e-114 416.0 583 44.3
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 6.5e-114 415.6 606 43.2
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 1.1e-113 414.8 610 43.0
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 2.5e-113 413.7 615 43.9
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 2.5e-113 413.7 594 41.9
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 3.2e-113 413.3 602 44.7
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 2.1e-112 410.6 606 43.7
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 4.7e-112 409.5 590 44.7
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 8.0e-112 408.7 610 42.5
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 1.0e-111 408.3 596 43.8
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 1.0e-111 408.3 619 43.3
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 1.4e-111 407.9 610 42.3
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 3.0e-111 406.8 608 42.8
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 9.8e-110 401.7 594 41.8
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 8.3e-109 398.7 603 43.9
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 1.2e-107 394.8 621 43.3
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 1.6e-107 394.4 591 42.3
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 5.9e-107 392.5 614 42.7
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 2.3e-106 390.6 622 41.6
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 3.8e-106 389.8 605 43.0
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 3.8e-106 389.8 605 42.8
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 5.0e-106 389.4 600 38.5
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 1.5e-105 387.9 612 41.3
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 1.9e-105 387.5 618 41.3
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 2.1e-104 384.0 596 40.1
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 6.1e-104 382.5 587 41.4
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 8.0e-104 382.1 604 39.2
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 1.0e-103 381.7 593 41.0
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 1.4e-103 381.3 603 40.8
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 1.4e-103 381.3 596 39.9
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 1.2e-102 378.3 582 40.0
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 2.0e-102 377.5 603 38.0
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 3.4e-102 376.7 595 41.2
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 9.8e-102 375.2 616 38.6
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 1.3e-101 374.8 621 38.0
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 3.7e-101 373.2 603 41.3
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 1.8e-100 370.9 602 38.0
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 5.4e-100 369.4 615 40.7
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 7.0e-100 369.0 525 44.6
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.2e-99 368.2 505 45.7
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 1.6e-99 367.9 596 39.6
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 2.7e-99 367.1 599 39.4
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 2.7e-99 367.1 596 39.6
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 4.6e-99 366.3 544 42.8
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 1.3e-98 364.8 618 38.2
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 3.0e-98 363.6 618 38.2
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 2.1e-96 357.5 593 40.3
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 4.7e-96 356.3 604 39.4
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 1.0e-95 355.1 602 39.7
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 5.2e-95 352.8 612 40.4
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 1.2e-91 341.7 583 37.4
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 4.3e-89 333.2 721 34.4
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 7.3e-89 332.4 603 37.6
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 2.1e-88 330.9 328 53.0
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 5.2e-87 326.2 560 39.8
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 5.8e-86 322.8 637 34.9
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 3.2e-84 317.0 308 53.2
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 7.8e-83 312.4 603 37.1
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 5.6e-81 306.2 528 37.5
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 3.1e-79 300.4 614 35.5
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 8.4e-77 292.4 601 36.3
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 1.1e-76 292.0 598 38.3
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 8.6e-74 282.3 362 46.7
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 5.6e-73 279.6 573 35.3
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 1.2e-72 278.5 608 37.3
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 2.4e-71 274.2 599 33.4
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 6.9e-71 272.7 542 34.3
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 9.3e-68 262.3 609 31.9
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 1.5e-65 255.0 490 37.1
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 3.8e-61 240.4 652 31.3
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 6.4e-61 239.6 683 29.6
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 3.3e-57 227.3 276 45.3
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 1.4e-55 221.9 474 35.7
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 9.0e-55 219.2 503 34.8
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 4.6e-51 206.8 373 34.6
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 7.4e-49 199.5 569 29.9
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 6.2e-48 196.4 246 44.3
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 3.1e-47 194.1 565 28.1
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 4.6e-43 180.3 175 52.0
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 1.1e-36 159.1 145 53.8
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.6e-35 155.2 581 27.4
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 6.3e-32 143.3 288 30.6
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 4.1e-31 140.6 150 56.7
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 2.6e-30 137.9 155 51.6
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 1.7e-29 135.2 269 32.0
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 2.6e-25 121.3 126 51.6
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 6.3e-24 116.7 534 22.5
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 1.7e-21 108.6 163 35.6
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 9.4e-20 102.8 237 30.4
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 1.2e-14 85.9 76 53.9
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.2e-14 85.9 76 53.9
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 8.5e-13 79.7 121 42.1
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 2.2e-08 65.1 118 34.7
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 2.7e-06 58.2 91 36.3
Cfa026542 Carpinus fangiana HOM05D005537 ORTHO05D124841 2.7e-06 58.2 168 30.4


User provided reference genes

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