Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 0.0e+00 3733.7 1910 100.0
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 0.0e+00 2646.3 1949 69.8
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 0.0e+00 2641.3 1942 70.5
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 0.0e+00 2639.0 1971 69.3
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 0.0e+00 2615.9 1952 68.7
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 0.0e+00 2589.7 1951 68.6
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 0.0e+00 2565.4 1952 67.7
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 0.0e+00 2564.3 1951 68.3
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 0.0e+00 2561.6 2007 66.4
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 0.0e+00 2561.2 1950 67.8
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 0.0e+00 2560.4 1949 67.7
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 0.0e+00 2536.9 1950 66.9
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 0.0e+00 2531.1 1951 66.5
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 0.0e+00 2526.1 1957 66.8
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 0.0e+00 2524.6 1949 66.6
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 0.0e+00 2510.3 1950 66.1
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 0.0e+00 2506.1 1949 66.9
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2506.1 1946 66.6
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 0.0e+00 2498.8 1950 66.5
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 0.0e+00 2490.3 1949 66.3
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2488.8 1948 65.9
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 2487.6 1948 66.1
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 0.0e+00 2484.5 1950 66.3
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 0.0e+00 2483.0 1952 66.2
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2476.8 1949 65.8
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 0.0e+00 2471.4 1946 66.1
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 0.0e+00 2466.0 1976 65.6
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 0.0e+00 2461.4 1951 65.9
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 0.0e+00 2459.5 1948 65.2
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2446.4 1939 65.2
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 0.0e+00 2440.6 1949 65.2
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 2436.0 1962 64.6
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 0.0e+00 2434.4 1950 64.5
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 0.0e+00 2432.9 1953 65.0
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 0.0e+00 2426.4 1954 64.6
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 0.0e+00 2418.7 1954 64.2
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 0.0e+00 2416.7 1954 64.3
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2414.8 1952 64.3
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2414.0 1946 64.7
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2408.3 1948 64.4
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 0.0e+00 2407.9 2018 63.3
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 0.0e+00 2406.7 1953 64.5
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 2400.9 1966 64.1
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 0.0e+00 2394.0 1954 64.7
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2393.6 1952 63.9
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 0.0e+00 2392.8 2083 61.6
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 0.0e+00 2386.7 1952 63.4
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 0.0e+00 2381.3 1951 63.0
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 0.0e+00 2380.1 1952 63.3
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2375.9 1952 63.7
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 0.0e+00 2374.4 1950 62.6
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2350.9 1960 63.5
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2342.4 1955 63.4
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 0.0e+00 2335.1 1776 68.1
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 0.0e+00 2332.8 1948 62.3
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 0.0e+00 2329.3 1983 63.0
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2328.5 1968 62.8
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 0.0e+00 2293.1 1939 62.9
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 0.0e+00 2291.2 1946 62.1
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 0.0e+00 2286.5 1947 61.8
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 0.0e+00 2283.1 1947 62.3
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 0.0e+00 2274.6 1947 61.6
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 0.0e+00 2269.6 1948 61.3
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2250.7 1951 61.4
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 0.0e+00 2222.2 2380 52.5
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 0.0e+00 2221.4 2071 57.4
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2208.7 1949 60.5
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 0.0e+00 2208.7 1948 60.3
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 0.0e+00 2206.0 1984 59.6
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2194.5 1954 59.9
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2189.8 1952 59.8
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 0.0e+00 2189.8 1955 59.9
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 0.0e+00 2188.7 1943 59.6
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 0.0e+00 2174.1 1695 66.2
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 0.0e+00 2157.9 1941 58.9
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2103.6 1647 66.1
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 0.0e+00 1988.0 1573 66.3
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 1968.4 1536 66.3
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 0.0e+00 1847.4 1645 58.4
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 0.0e+00 1802.3 1458 63.4
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 0.0e+00 1768.1 1467 62.9
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 0.0e+00 1711.0 1973 48.2
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 0.0e+00 1649.8 1971 46.1
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 0.0e+00 1632.1 1212 68.5
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 1613.2 1489 58.6
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1600.9 1912 50.0
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 0.0e+00 1574.3 1964 45.6
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 0.0e+00 1552.7 1505 54.6
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 0.0e+00 1508.0 1983 43.3
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 0.0e+00 1369.4 1236 58.3
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 0.0e+00 1258.4 1279 52.5
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 0.0e+00 1223.0 2006 38.1
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1190.3 998 63.3
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 0.0e+00 1176.0 1156 55.6
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1136.3 865 66.1
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 9.0e-295 1018.1 1273 47.5
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 1.6e-283 980.7 1705 38.8
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 5.3e-279 965.7 802 60.8
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 1.1e-255 888.3 1705 36.4
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 8.2e-248 862.1 808 55.6
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 1.4e-239 834.7 736 60.3
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.4e-231 808.1 793 53.1
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 3.1e-231 807.0 731 59.6
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 8.3e-208 729.2 643 62.4
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.3e-202 711.1 735 51.7
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 5.2e-202 709.9 1046 42.8
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 2.4e-194 684.5 514 66.5
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 7.1e-191 672.9 831 48.4
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 4.3e-188 663.7 1077 37.4
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 5.4e-183 646.7 1091 37.7
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 1.5e-180 638.6 494 67.8
Os02g0202300 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 2.0e-129 468.8 399 57.9
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 1.0e-109 403.3 415 57.3
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 2.5e-103 382.1 426 53.8
Cpa.g.c32453 Carica papaya HOM05D003776 ORTHO05D004459 1.4e-101 376.3 299 64.9
Hma1.2p1_2368F.1_g320720 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 9.8e-100 370.2 314 64.6
HanXRQChr12g0373951 Helianthus annuus HOM05D003776 ORTHO05D004459 2.2e-99 369.0 327 59.9
CiPaw.03G243900 Carya illinoinensis HOM05D003776 ORTHO05D004459 3.3e-95 355.1 230 77.0
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 1.2e-94 353.2 209 81.8
HanXRQChr04g0119281 Helianthus annuus HOM05D003776 ORTHO05D004459 2.3e-93 349.0 326 58.3
Oeu055886.1 Olea europaea HOM05D003776 ORTHO05D004459 4.1e-90 338.2 296 61.8
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 1.6e-89 336.3 334 53.6
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 1.9e-82 312.8 336 52.1
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 8.6e-80 303.9 408 45.3
Ca_29538_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 2.4e-77 295.8 264 59.8
QL02p088302 Quercus lobata HOM05D003776 ORTHO05D004459 4.0e-69 268.5 176 76.1
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 2.4e-66 259.2 283 50.5
SEGI_08250 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.4e-61 243.4 198 62.1
SHI03382 Sapria himalayana HOM05D003776 ORTHO05D004459 4.9e-59 235.0 210 60.5
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 1.9e-50 206.5 331 41.7
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 2.7e-49 202.6 261 46.7
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 2.7e-49 202.6 261 46.7
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 3.3e-47 195.7 179 58.1
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 1.3e-46 193.7 252 47.6
Actinidia07427 Actinidia chinensis HOM05D003776 ORTHO05D004459 1.1e-45 190.7 150 67.3
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 4.5e-44 185.3 423 35.0
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 1.3e-40 173.7 151 61.6
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 5.1e-40 171.8 272 41.5
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 1.3e-38 167.2 151 59.6
RcHm_v2.0_Chr5g0007331 Rosa chinensis HOM05D003776 ORTHO05D004459 1.1e-37 164.1 424 32.8
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 9.1e-37 161.0 169 49.7
Psat7g006280 Pisum sativum HOM05D003776 ORTHO05D004459 2.0e-36 159.8 126 68.3
PRCOL_00003394 Prasinoderma coloniale HOM05D003776 ORTHO05D004459 1.1e-34 154.1 1711 21.2
ATR0322G028 Amborella trichopoda HOM05D003776 ORTHO05D004459 1.8e-32 146.7 174 50.0
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 5.1e-32 145.2 97 74.2
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 1.1e-31 144.1 82 75.6
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 3.8e-27 129.0 720 23.9
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 3.2e-26 125.9 164 45.7
SHI03385 Sapria himalayana HOM05D003776 ORTHO05D004459 4.2e-26 125.6 116 61.2
RcHm_v2.0_Chr3g0479611 Rosa chinensis HOM05D003776 ORTHO05D004459 4.7e-25 122.1 97 64.9
Cpa.g.c37328 Carica papaya HOM05D003776 ORTHO05D004459 5.7e-23 115.2 66 81.8
HPP92_008668 Vanilla planifolia HOM05D003776 ORTHO05D004459 5.3e-21 108.6 254 33.5
Cpa.g.sc75.37 Carica papaya HOM05D003776 ORTHO05D004459 7.0e-21 108.2 81 67.9
Peaxi162Scf00062g02012 Petunia axillaris HOM05D003776 ORTHO05D004459 1.3e-19 104.0 108 49.1
ATR0322G071 Amborella trichopoda HOM05D003776 ORTHO05D004459 2.2e-19 103.2 74 67.6
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 5.0e-19 102.1 957 21.4
SEGI_04425 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.1e-18 100.9 103 46.6
Peaxi162Scf00574g00919 Petunia axillaris HOM05D003776 ORTHO05D004459 1.5e-18 100.5 97 51.5
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 3.2e-18 99.4 144 43.1
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 6.1e-17 95.1 122 42.6
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 8.8e-16 91.3 57 75.4
Actinidia07426 Actinidia chinensis HOM05D003776 ORTHO05D004459 9.7e-15 87.8 83 55.4
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 2.4e-13 83.2 55 69.1
SalBow1G5037 Salvia bowleyana HOM05D001898 ORTHO05D002580 1.7e-11 77.0 52 71.2
CAN.G1024.1 Capsicum annuum HOM05D003776 ORTHO05D002238 2.9e-11 76.3 101 44.6
Prupe.1G010000 Prunus persica HOM05D003776 ORTHO05D004459 1.1e-10 74.3 72 59.7
PSO478G0731 Papaver somniferum HOM05D003776 ORTHO05D004459 4.2e-10 72.4 70 54.3
SEGI_19045 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 7.2e-10 71.6 78 51.3
SalBow8G3232 Salvia bowleyana HOM05D002512 ORTHO05D002660 1.4e-08 67.4 43 69.8
CBR_g76107 Chara braunii HOM05D003776 ORTHO05D004459 1.8e-08 67.0 64 46.9
SEGI_27908 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 4.0e-08 65.9 43 72.1
CAN.G1616.4 Capsicum annuum HOM05D003776 ORTHO05D004459 9.8e-07 61.2 56 58.9
Sed0006485 Sechium edule HOM05D003776 ORTHO05D004459 2.8e-06 59.7 49 59.2
RcHm_v2.0_Chr5g0007271 Rosa chinensis HOM05D003776 ORTHO05D004459 4.8e-06 58.9 73 47.9


User provided reference genes

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