Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 7.1e-101 371.3 250 100.0
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 7.9e-84 314.7 201 84.1
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 7.9e-84 314.7 195 85.6
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 1.0e-83 314.3 196 85.2
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 1.4e-83 313.9 196 86.2
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 1.4e-83 313.9 199 85.4
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 5.1e-83 312.0 196 84.7
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 8.8e-83 311.2 201 82.6
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 1.1e-82 310.8 202 84.2
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 1.5e-82 310.5 201 81.6
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 2.5e-82 309.7 203 84.7
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 2.5e-82 309.7 199 81.9
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 4.3e-82 308.9 201 83.6
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 4.3e-82 308.9 195 85.1
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 4.3e-82 308.9 202 83.2
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 4.3e-82 308.9 202 84.7
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 5.7e-82 308.5 198 84.8
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 9.7e-82 307.8 199 81.9
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 1.3e-81 307.4 190 85.3
Gorai.004G251700 Gossypium raimondii HOM05D003950 ORTHO05D004697 2.8e-81 306.2 195 84.6
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 1.4e-80 303.9 195 84.6
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 1.8e-80 303.5 216 78.2
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 2.4e-80 303.1 197 85.3
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 3.1e-80 302.8 191 84.3
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 3.1e-80 302.8 200 82.5
ECA248G3680 Erigeron canadensis HOM05D003950 ORTHO05D004697 4.1e-80 302.4 201 81.6
Ca_25687_v3 Cicer arietinum L. HOM05D003950 ORTHO05D004697 5.3e-80 302.0 193 85.0
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 6.9e-80 301.6 199 79.9
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 2.0e-79 300.1 199 83.4
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 2.6e-79 299.7 196 83.7
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 3.4e-79 299.3 202 81.7
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 5.9e-79 298.5 199 83.4
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 1.7e-78 297.0 196 82.1
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 1.7e-78 297.0 197 81.7
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 2.2e-78 296.6 194 81.4
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 6.5e-78 295.0 196 82.7
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 8.5e-78 294.7 195 83.1
Atru.chr2.1469 Acer truncatum HOM05D003950 ORTHO05D004697 2.5e-77 293.1 195 81.0
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 3.2e-77 292.7 187 81.8
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 9.4e-77 291.2 198 80.3
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 1.2e-76 290.8 195 82.1
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 4.7e-76 288.9 191 82.2
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 3.9e-75 285.8 200 82.0
FvH4_1g28440 Fragaria vesca HOM05D003950 ORTHO05D004697 6.7e-75 285.0 196 80.6
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 6.7e-75 285.0 194 73.2
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 2.0e-74 283.5 194 82.0
PSO339G3097 Papaver somniferum HOM05D003950 ORTHO05D004697 2.6e-74 283.1 204 78.4
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 1.3e-73 280.8 199 76.4
CANSAT78G2427 Cannabis sativa HOM05D003950 ORTHO05D004697 2.8e-73 279.6 200 74.5
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 6.3e-73 278.5 193 81.3
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 1.1e-72 277.7 180 82.2
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 2.4e-72 276.6 201 79.1
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 1.2e-71 274.2 201 77.6
Nitab4.5_0002131g0010 Nicotiana tabacum HOM05D003950 ORTHO05D004697 1.2e-71 274.2 179 82.1
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 3.5e-71 272.7 205 75.6
Sp6g16940 Schrenkiella parvula HOM05D003950 ORTHO05D004697 5.9e-71 271.9 195 75.9
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 5.9e-71 271.9 224 62.9
Nitab4.5_0000121g0060 Nicotiana tabacum HOM05D003950 ORTHO05D004697 2.9e-70 269.6 192 77.6
A03p14340 Brassica napus HOM05D003950 ORTHO05D004697 3.8e-70 269.2 198 74.2
BraA03t10731Z Brassica rapa HOM05D003950 ORTHO05D004697 3.8e-70 269.2 198 74.2
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 1.5e-69 267.3 183 82.5
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 2.5e-69 266.5 199 73.4
CSS0011085 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 2.5e-69 266.5 224 69.2
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 2.5e-69 266.5 195 75.9
Potri.013G062500 Populus trichocarpa HOM05D003950 ORTHO05D004697 2.5e-69 266.5 201 76.1
BolC3t14092H Brassica oleracea HOM05D003950 ORTHO05D004697 1.2e-68 264.2 195 73.8
FAN23G1412 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.2e-68 264.2 187 79.7
Cpa.g.sc161.15 Carica papaya HOM05D003950 ORTHO05D004697 1.6e-68 263.8 194 75.8
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 6.1e-68 261.9 191 75.9
Manes.09G138000 Manihot esculenta HOM05D003950 ORTHO05D004697 8.0e-68 261.5 168 85.7
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 2.3e-67 260.0 189 75.7
C03p16720 Brassica napus HOM05D003950 ORTHO05D004697 6.7e-67 258.5 199 71.4
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 6.7e-67 258.5 198 73.7
Nn6g32388 Nelumbo nucifera HOM05D003950 ORTHO05D004697 2.2e-65 253.4 200 72.0
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 2.8e-65 253.1 191 73.8
CANSAT78G2379 Cannabis sativa HOM05D003950 ORTHO05D004697 3.7e-65 252.7 174 80.5
MD14G1005800 Malus domestica HOM05D003950 ORTHO05D004697 1.4e-64 250.8 163 82.8
MSTRG.10428 Avicennia marina HOM05D003950 ORTHO05D004697 7.7e-63 245.0 163 82.8
FAN28G2715 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.9e-61 240.4 172 79.7
ATR0697G272 Amborella trichopoda HOM05D003950 ORTHO05D004697 1.2e-60 237.7 174 75.9
vmacro07558 Vaccinium macrocarpon HOM05D003950 ORTHO05D004697 1.6e-60 237.3 150 88.7
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 1.0e-59 234.6 204 61.8
CDE07G1488 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 1.4e-59 234.2 193 67.4
EL10Ac1g01242 Beta vulgaris HOM05D003950 ORTHO05D004697 1.8e-59 233.8 158 78.5
Duzib177G0442 Durio zibethinus HOM05D003950 ORTHO05D004697 4.0e-59 232.6 194 62.9
Sc07g0007800 Simmondsia chinensis HOM05D003950 ORTHO05D004697 4.4e-58 229.2 136 77.9
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 7.5e-58 228.4 139 79.1
Aa31LG2G1860 Aethionema arabicum HOM05D003950 ORTHO05D004697 9.8e-58 228.0 217 64.1
Dinv05569 Davidia involucrata HOM05D003950 ORTHO05D004697 1.7e-57 227.3 153 83.7
TAR623G1392 Trochodendron aralioides HOM05D003950 ORTHO05D004697 8.3e-57 224.9 150 82.7
CDE06G0557 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 1.2e-55 221.1 186 67.2
Aqoxy1G00539 Aquilegia oxysepala HOM05D003950 ORTHO05D004697 2.0e-55 220.3 167 74.9
AUR62027738 Chenopodium quinoa HOM05D003950 ORTHO05D004697 5.9e-55 218.8 152 78.3
PSO384G0364 Papaver somniferum HOM05D003950 ORTHO05D004697 1.9e-53 213.8 200 57.5
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 7.2e-53 211.8 184 62.5
AUR62018910 Chenopodium quinoa HOM05D003950 ORTHO05D004697 1.2e-52 211.1 194 63.4
unitig_899.g15193 Utricularia gibba HOM05D003950 ORTHO05D004697 4.7e-52 209.1 176 68.8
Gohir.D13G167037 Gossypium hirsutum HOM05D003950 ORTHO05D004697 4.0e-51 206.1 136 73.5
Zm00001eb403220 Zea mays HOM05D003950 ORTHO05D004697 2.6e-50 203.4 178 66.3
HanXRQChr11g0348261 Helianthus annuus HOM05D003950 ORTHO05D004697 3.7e-49 199.5 173 62.4
FAN17G2887 Fragaria x ananassa HOM05D003950 ORTHO05D004697 7.0e-48 195.3 181 61.3
AagrBONN_evm.TU.Sc2ySwM_344.2926 Anthoceros agrestis HOM05D003950 ORTHO05D004697 1.2e-47 194.5 194 59.3
BcaC01g06337 Brassica carinata HOM05D003950 ORTHO05D004697 1.2e-47 194.5 135 69.6
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 2.0e-47 193.7 173 63.0
Sabra13G0055700 Salix brachista HOM05D003950 ORTHO05D004697 2.0e-47 193.7 219 49.3
Prupe.7G009900 Prunus persica HOM05D003950 ORTHO05D004697 5.9e-47 192.2 131 80.9
HanXRQChr11g0348221 Helianthus annuus HOM05D003950 ORTHO05D004697 8.6e-46 188.3 145 66.9
Lj1A1064G32 Lonicera japonica HOM05D003950 ORTHO05D004697 1.5e-45 187.6 201 53.2
SMO239G0197 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 1.5e-45 187.6 189 56.6
HPP92_027838 Vanilla planifolia HOM05D003950 ORTHO05D004697 5.6e-45 185.7 136 69.9
Os03g0157500 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 2.8e-44 183.3 137 64.2
Os10g0438000 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 4.7e-44 182.6 196 57.7
MD03G1043800 Malus domestica HOM05D003950 ORTHO05D004697 1.4e-43 181.0 175 54.3
Gohir.A08G219522 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.8e-43 180.6 209 51.2
MD03G1043900 Malus domestica HOM05D003950 ORTHO05D004697 1.2e-42 177.9 189 58.7
HanXRQChr11g0348211 Helianthus annuus HOM05D003950 ORTHO05D004697 3.4e-42 176.4 174 60.3
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 9.8e-42 174.9 176 61.4
RcHm_v2.0_Chr5g0074451 Rosa chinensis HOM05D003950 ORTHO05D004697 9.8e-42 174.9 180 57.2
MD03G1047000 Malus domestica HOM05D003950 ORTHO05D004697 1.3e-41 174.5 165 66.1
MD11G1047200 Malus domestica HOM05D003950 ORTHO05D004697 1.4e-40 171.0 161 61.5
Prupe.6G036000 Prunus persica HOM05D003950 ORTHO05D004697 1.4e-40 171.0 166 62.7
Pp3c19_3550 Physcomitrium patens HOM05D003950 ORTHO05D004697 4.6e-39 166.0 133 57.1
Mapoly0001s0409 Marchantia polymorpha HOM05D003950 ORTHO05D004697 1.0e-38 164.9 170 59.4
HanXRQChr11g0348281 Helianthus annuus HOM05D003950 ORTHO05D004697 8.6e-38 161.8 169 63.9
HanXRQChr11g0347961 Helianthus annuus HOM05D003950 ORTHO05D004697 1.4e-35 154.5 136 69.9
FvH4_4g13720 Fragaria vesca HOM05D003950 ORTHO05D004697 4.0e-35 152.9 167 59.9
FAN11G3501 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.9e-33 146.7 166 50.6
HanXRQChr11g0347991 Helianthus annuus HOM05D003950 ORTHO05D004697 2.9e-33 146.7 110 65.5
FAN25G1848 Fragaria x ananassa HOM05D003950 ORTHO05D004697 8.3e-33 145.2 133 57.1
FvH4_3g41510 Fragaria vesca HOM05D003950 ORTHO05D004697 2.4e-32 143.7 161 50.9
FAN11G2374 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.4e-32 143.7 160 49.4
HanXRQChr11g0347971 Helianthus annuus HOM05D003950 ORTHO05D004697 2.4e-32 143.7 113 66.4
FAN21G2807 Fragaria x ananassa HOM05D003950 ORTHO05D004697 7.0e-32 142.1 132 56.8
HanXRQChr11g0347951 Helianthus annuus HOM05D003950 ORTHO05D004697 1.6e-31 141.0 116 62.1
FvH4_3g41490 Fragaria vesca HOM05D003950 ORTHO05D004697 3.5e-31 139.8 158 48.7
arahy.Tifrunner.gnm1.ann1.Y4106G Arachis hypogaea HOM05D003950 ORTHO05D004697 3.9e-30 136.3 86 76.7
AUR62043941 Chenopodium quinoa HOM05D003950 ORTHO05D004697 6.6e-30 135.6 133 63.9
FAN19G2544 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.5e-29 133.7 390 32.8
arahy.Tifrunner.gnm1.ann1.NAY1Y6 Arachis hypogaea HOM05D003950 ORTHO05D004697 5.6e-29 132.5 86 74.4
FAN05G4552 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.8e-28 130.2 194 43.8
arahy.Tifrunner.gnm1.ann1.045CRL Arachis hypogaea HOM05D003950 ORTHO05D004697 4.7e-28 129.4 96 66.7
FAN13G1636 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.2e-26 124.8 184 40.8
arahy.Tifrunner.gnm1.ann1.F7GYSS Arachis hypogaea HOM05D003950 ORTHO05D004697 2.2e-25 120.6 74 77.0
SEGI_22625 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 1.1e-24 118.2 93 60.2
RcHm_v2.0_Chr5g0074461 Rosa chinensis HOM05D003950 ORTHO05D004697 2.7e-23 113.6 88 62.5
FvH4_6g31590 Fragaria vesca HOM05D003950 ORTHO05D004697 7.8e-23 112.1 108 53.7
MD03G1035600 Malus domestica HOM05D003950 ORTHO05D004697 5.1e-22 109.4 181 47.5
Pp3c22_8540 Physcomitrium patens HOM05D003950 ORTHO05D004697 9.5e-21 105.1 110 49.1
SEGI_36015 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 6.2e-20 102.4 68 66.2
RcHm_v2.0_Chr5g0074441 Rosa chinensis HOM05D003950 ORTHO05D004697 2.3e-19 100.5 97 54.6
Pp3c3_29270 Physcomitrium patens HOM05D003950 ORTHO05D004697 4.0e-19 99.8 212 40.6
Pp3c19_20680 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.0e-18 97.4 112 42.9
Pp3c22_8500 Physcomitrium patens HOM05D003950 ORTHO05D004697 5.8e-18 95.9 161 37.3
Pp3c22_3970 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.2e-15 88.2 144 37.5
Lsat_1_v5_gn_9_112501 Lactuca sativa HOM05D003950 ORTHO05D004697 6.0e-15 85.9 113 46.0
FvH4_3g41240 Fragaria vesca HOM05D003950 ORTHO05D004697 1.3e-14 84.7 115 40.9
FAN11G3220 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.3e-14 84.7 115 40.9
arahy.Tifrunner.gnm1.ann1.ZT0L0Q Arachis hypogaea HOM05D003950 ORTHO05D004697 1.7e-14 84.3 56 71.4
FAN13G2151 Fragaria x ananassa HOM05D003950 ORTHO05D004697 6.6e-14 82.4 70 58.6
Pp3c22_8490 Physcomitrium patens HOM05D003950 ORTHO05D004697 6.6e-14 82.4 117 43.6
Gohir.A07G127733 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.5e-13 81.3 44 86.4
arahy.Tifrunner.gnm1.ann1.FD1PW0 Arachis hypogaea HOM05D000879 ORTHO05D004697 1.9e-13 80.9 56 67.9
FAN13G2987 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.4e-10 70.1 184 31.0
Cre13.g585250 Chlamydomonas reinhardtii HOM05D003950 ORTHO05D004697 1.3e-09 68.2 64 48.4
arahy.Tifrunner.gnm1.ann1.1EL4AZ Arachis hypogaea HOM05D003175 ORTHO05D021464 4.9e-09 66.2 39 76.9
CBR_g23172 Chara braunii HOM05D003950 ORTHO05D004697 4.9e-09 66.2 94 41.5
HanXRQChr11g0348271 Helianthus annuus HOM05D003950 ORTHO05D004697 6.4e-09 65.9 81 48.1
SEGI_15476 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 7.1e-08 62.4 97 39.2
Manes.08G154400 Manihot esculenta HOM05D003950 ORTHO05D004697 1.6e-07 61.2 37 67.6
Thhalv10020689m.g Eutrema salsugineum HOM05D001221 ORTHO05D009285 1.7e-06 57.8 92 37.0
Pp3c8_19020 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.7e-06 57.8 60 46.7
PGSC0003DMG400036751 Solanum tuberosum HOM05D003419 ORTHO05D004113 3.9e-06 56.6 100 33.0
Pp3c2_37860 Physcomitrium patens HOM05D003419 ORTHO05D004113 5.1e-06 56.2 93 33.3
Rhsim05G0207300 Rhododendron simsii HOM05D001221 ORTHO05D009285 5.1e-06 56.2 95 38.9
FAN02G1926 Fragaria x ananassa HOM05D001221 ORTHO05D009285 6.6e-06 55.8 85 44.7
FAN05G4573 Fragaria x ananassa HOM05D001221 ORTHO05D009285 6.6e-06 55.8 85 44.7
Manes.09G103400 Manihot esculenta HOM05D001221 ORTHO05D009285 6.6e-06 55.8 85 41.2
ECA247G4014 Erigeron canadensis HOM05D001221 ORTHO05D009285 8.7e-06 55.5 88 42.0


User provided reference genes

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