Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016876 Daucus carota HOM05D004602 ORTHO05D005906 0.0e+00 2511.9 1333 100.0
Lj1A1104G73 Lonicera japonica HOM05D004602 ORTHO05D005906 0.0e+00 1887.8 1354 74.4
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1884.4 1332 74.5
CSS0013313 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1877.8 1297 75.6
vmacro09030 Vaccinium macrocarpon HOM05D004602 ORTHO05D005906 0.0e+00 1867.0 1370 72.6
CSS0046388 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1838.5 1297 74.6
QL07p008767 Quercus lobata HOM05D004602 ORTHO05D005906 0.0e+00 1838.2 1296 73.8
Thecc.05G139800 Theobroma cacao HOM05D004602 ORTHO05D005906 0.0e+00 1833.5 1344 71.5
Ciclev10018515m.g Citrus clementina HOM05D004602 ORTHO05D005906 0.0e+00 1828.5 1329 72.1
Potri.006G041500 Populus trichocarpa HOM05D004602 ORTHO05D005906 0.0e+00 1823.9 1343 71.9
Haze_19715 Corylus avellana HOM05D004602 ORTHO05D005906 0.0e+00 1822.0 1321 72.7
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 0.0e+00 1820.4 1295 73.8
Gohir.A11G308300 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1820.1 1347 71.0
SGA_v2.0_scaffold105G30304 Striga asiatica HOM05D004602 ORTHO05D005906 0.0e+00 1819.3 1358 71.1
Gorai.007G353800 Gossypium raimondii HOM05D004602 ORTHO05D005906 0.0e+00 1814.7 1347 70.5
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 0.0e+00 1812.3 1294 73.0
Sopen10g030360 Solanum pennellii HOM05D004602 ORTHO05D005906 0.0e+00 1812.0 1353 71.7
TWI53G0771 Tripterygium wilfordii HOM05D004602 ORTHO05D005906 0.0e+00 1812.0 1346 70.7
MD14G1099800 Malus domestica HOM05D004602 ORTHO05D005906 0.0e+00 1811.6 1345 71.4
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 0.0e+00 1810.8 1339 71.5
Nn2g14888 Nelumbo nucifera HOM05D004602 ORTHO05D005906 0.0e+00 1810.0 1335 71.3
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1803.1 1346 71.2
MSTRG.19816 Avicennia marina HOM05D004602 ORTHO05D005906 0.0e+00 1796.9 1344 70.8
Cc06_g18890 Coffea canephora HOM05D004602 ORTHO05D005906 0.0e+00 1796.9 1366 70.7
Eucgr.A02262 Eucalyptus grandis HOM05D004602 ORTHO05D005906 0.0e+00 1793.9 1291 71.6
Sabra06G0028200 Salix brachista HOM05D004602 ORTHO05D005906 0.0e+00 1793.5 1342 70.6
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 0.0e+00 1792.3 1347 70.6
CAN.G641.74 Capsicum annuum HOM05D004602 ORTHO05D005906 0.0e+00 1791.9 1292 73.5
PGSC0003DMG400029835 Solanum tuberosum HOM05D004602 ORTHO05D005906 0.0e+00 1791.9 1299 73.1
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 0.0e+00 1790.0 1296 73.1
Peaxi162Scf01378g00118 Petunia axillaris HOM05D004602 ORTHO05D005906 0.0e+00 1788.5 1357 70.7
HanXRQChr06g0176911 Helianthus annuus HOM05D004602 ORTHO05D005906 0.0e+00 1783.1 1353 70.8
Lsat_1_v5_gn_8_82681 Lactuca sativa HOM05D004602 ORTHO05D005906 0.0e+00 1781.1 1246 74.2
AT3G57060 Arabidopsis thaliana HOM05D004602 ORTHO05D005906 0.0e+00 1774.2 1288 71.7
FvH4_6g25220 Fragaria vesca HOM05D004602 ORTHO05D005906 0.0e+00 1772.3 1293 71.8
Carub.0005s2386 Capsella rubella HOM05D004602 ORTHO05D005906 0.0e+00 1769.2 1281 71.0
Migut.J01674 Erythranthe guttata HOM05D004602 ORTHO05D005906 0.0e+00 1766.9 1268 73.0
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 0.0e+00 1764.6 1341 69.8
THA.LOC104824412 Tarenaya hassleriana HOM05D004602 ORTHO05D005906 0.0e+00 1759.2 1263 71.6
Cpa.g.sc5.207 Carica papaya HOM05D004602 ORTHO05D005906 0.0e+00 1758.8 1299 70.7
ClCG10G016070 Citrullus lanatus HOM05D004602 ORTHO05D005906 0.0e+00 1757.7 1291 70.8
FAN14G4483 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1756.1 1293 71.6
CARHR167250 Cardamine hirsuta HOM05D004602 ORTHO05D005906 0.0e+00 1752.3 1286 70.5
BolC4t25093H Brassica oleracea HOM05D004602 ORTHO05D005906 0.0e+00 1751.9 1282 70.5
PGR031G1006 Punica granatum HOM05D004602 ORTHO05D005906 0.0e+00 1751.9 1298 71.1
MELO3C009773.2 Cucumis melo HOM05D004602 ORTHO05D005906 0.0e+00 1751.5 1271 71.3
BcaC02g09900 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1750.3 1282 70.4
C04p35390 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1750.3 1282 70.4
Thhalv10005748m.g Eutrema salsugineum HOM05D004602 ORTHO05D005906 0.0e+00 1749.9 1283 70.6
BraA04t16055Z Brassica rapa HOM05D004602 ORTHO05D005906 0.0e+00 1749.2 1282 70.4
FAN09G3373 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1747.3 1340 69.2
Sp5g05520 Schrenkiella parvula HOM05D004602 ORTHO05D005906 0.0e+00 1747.3 1264 71.3
COL.COLO4_37951 Corchorus olitorius HOM05D004602 ORTHO05D005906 0.0e+00 1744.9 1362 68.6
EL10Ac3g07209 Beta vulgaris HOM05D004602 ORTHO05D005906 0.0e+00 1743.8 1383 67.1
Lj5g0012838 Lotus japonicus HOM05D004602 ORTHO05D005906 0.0e+00 1743.8 1350 69.5
A04p03790 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1742.2 1282 70.0
C08p32390 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1740.7 1283 69.9
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1738.0 1345 68.6
A09p49980 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1736.5 1268 70.6
BraA09t40448Z Brassica rapa HOM05D004602 ORTHO05D005906 0.0e+00 1736.5 1268 70.6
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 0.0e+00 1735.3 1300 71.2
BolC8t50853H Brassica oleracea HOM05D004602 ORTHO05D005906 0.0e+00 1726.5 1284 69.5
TPR.G19659 Trifolium pratense HOM05D004602 ORTHO05D005906 0.0e+00 1726.5 1346 68.1
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 0.0e+00 1722.6 1348 68.5
Hund24628 Selenicereus undatus HOM05D004602 ORTHO05D005906 0.0e+00 1714.9 1350 67.9
PSO384G2446 Papaver somniferum HOM05D004602 ORTHO05D005906 0.0e+00 1713.4 1268 70.0
Sed0020412 Sechium edule HOM05D004602 ORTHO05D005906 0.0e+00 1711.4 1289 69.2
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 0.0e+00 1711.0 1297 68.7
arahy.Tifrunner.gnm1.ann1.F5KNV4 Arachis hypogaea HOM05D004602 ORTHO05D005906 0.0e+00 1711.0 1296 69.7
Aa31LG10G11980 Aethionema arabicum HOM05D004602 ORTHO05D005906 0.0e+00 1710.3 1277 69.2
arahy.Tifrunner.gnm1.ann1.0AC10P Arachis hypogaea HOM05D004602 ORTHO05D005906 0.0e+00 1708.7 1296 69.5
Medtr1g051230 Medicago truncatula HOM05D004602 ORTHO05D005906 0.0e+00 1708.0 1306 69.4
PSO339G0660 Papaver somniferum HOM05D004602 ORTHO05D005906 0.0e+00 1706.8 1265 69.5
Dinv08512 Davidia involucrata HOM05D004602 ORTHO05D005906 0.0e+00 1705.3 1168 76.4
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 0.0e+00 1702.2 1319 69.1
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 0.0e+00 1701.4 1347 68.0
GSVIVG01033598001 Vitis vinifera HOM05D004602 ORTHO05D005906 0.0e+00 1699.1 1358 68.3
Psat6g123240 Pisum sativum HOM05D004602 ORTHO05D005906 0.0e+00 1697.2 1346 67.5
ECA236G3238 Erigeron canadensis HOM05D004602 ORTHO05D005906 0.0e+00 1692.2 1379 66.9
CsaV3_3G040360 Cucumis sativus L. HOM05D004602 ORTHO05D005906 0.0e+00 1689.9 1293 68.5
Rhsim04G0110600 Rhododendron simsii HOM05D004602 ORTHO05D005906 0.0e+00 1667.1 1411 64.7
Nitab4.5_0001364g0050 Nicotiana tabacum HOM05D004602 ORTHO05D005906 0.0e+00 1658.7 1356 67.5
Nitab4.5_0000571g0090 Nicotiana tabacum HOM05D004602 ORTHO05D005906 0.0e+00 1654.8 1300 68.5
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 0.0e+00 1654.8 1311 68.7
BcaC07g40081 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1645.6 1249 68.6
Atru.chr1.1489 Acer truncatum HOM05D004602 ORTHO05D005906 0.0e+00 1644.4 1351 66.8
BcaC07g40050 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1644.0 1363 64.3
AUR62030338 Chenopodium quinoa HOM05D004602 ORTHO05D005906 0.0e+00 1610.5 1278 66.9
unitig_21.g20921 Utricularia gibba HOM05D004602 ORTHO05D005906 0.0e+00 1600.5 1274 66.6
AL5G38540 Arabidopsis lyrata HOM05D004602 ORTHO05D005906 0.0e+00 1596.3 1127 73.0
Peaxi162Scf00970g00168 Petunia axillaris HOM05D004602 ORTHO05D005906 0.0e+00 1559.3 1283 66.3
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 0.0e+00 1541.2 1343 61.1
Gohir.D11G323700 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1537.3 1132 71.2
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 0.0e+00 1535.4 1308 62.4
Ah.04g151080 Amaranthus hybridus HOM05D004602 ORTHO05D005906 0.0e+00 1523.8 1144 69.8
AUR62040826 Chenopodium quinoa HOM05D004602 ORTHO05D005906 0.0e+00 1499.2 1091 71.2
CiPaw.09G045900 Carya illinoinensis HOM05D004602 ORTHO05D005906 0.0e+00 1493.4 1081 72.8
SEGI_37933 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 0.0e+00 1436.4 1311 58.4
Zm00001eb329790 Zea mays HOM05D004602 ORTHO05D005906 0.0e+00 1422.5 1230 61.9
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 0.0e+00 1347.8 1292 57.6
SHI28280 Sapria himalayana HOM05D004602 ORTHO05D005906 0.0e+00 1318.5 1100 64.7
BcaNung07305 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1275.8 1041 66.0
FAN02G3171 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1171.0 830 73.0
Pp3c3_32300 Physcomitrium patens HOM05D004602 ORTHO05D005906 0.0e+00 1142.1 1315 48.0
AagrBONN_evm.TU.Sc2ySwM_362.2771 Anthoceros agrestis HOM05D004602 ORTHO05D005906 3.4e-309 1065.4 1298 46.8
SMO351G0392 Selaginella moellendorffii HOM05D004602 ORTHO05D005906 1.9e-304 1049.7 1296 45.9
Pp3c12_12160 Physcomitrium patens HOM05D004602 ORTHO05D005906 1.6e-303 1046.6 1248 45.7
Mapoly0022s0167 Marchantia polymorpha HOM05D004602 ORTHO05D005906 2.9e-300 1035.8 1317 44.0
CANSAT56G2079 Cannabis sativa HOM05D004602 ORTHO05D005906 2.5e-299 1032.7 703 75.2
CBR_g63081 Chara braunii HOM05D004602 ORTHO05D005906 1.4e-254 884.0 1312 41.1
CiPaw.16G087800 Carya illinoinensis HOM05D004602 ORTHO05D005906 1.6e-250 870.5 825 60.5
MBI13_g01621_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.8e-177 627.9 631 55.9
MCO05G584 Micromonas commoda HOM05D004602 ORTHO05D005906 5.5e-174 616.3 1288 33.7
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 7.9e-173 612.5 1171 31.3
COL.COLO4_37953 Corchorus olitorius HOM05D004602 ORTHO05D005906 5.0e-159 566.6 546 59.7
CDE04G1839 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 2.6e-123 448.0 365 64.7
FvH4_6g26040 Fragaria vesca HOM05D004602 ORTHO05D005906 1.8e-108 398.7 347 65.1
Haze_26650 Corylus avellana HOM05D004602 ORTHO05D005906 1.9e-97 362.1 1144 26.8
Cfa024947 Carpinus fangiana HOM05D004602 ORTHO05D005906 1.1e-84 319.7 1102 25.0
SalBow8G3517 Salvia bowleyana HOM05D004602 ORTHO05D005906 5.1e-63 247.7 266 52.3
SalBow8G5198 Salvia bowleyana HOM05D004602 ORTHO05D005906 5.1e-63 247.7 266 52.3
Cre10.g432500 Chlamydomonas reinhardtii HOM05D004602 ORTHO05D005906 3.4e-59 235.0 1341 23.4
MBI15_g03986_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 5.9e-59 234.2 208 61.5
MBI13_g41158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.2e-56 226.5 216 59.3
MBI13_g41314_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 7.9e-56 223.8 216 57.9
SalBow8G5420 Salvia bowleyana HOM05D004602 ORTHO05D005906 5.1e-55 221.1 210 58.6
MBI06_g41970_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.4e-52 213.0 177 62.7
SHI28279 Sapria himalayana HOM05D004602 ORTHO05D005906 2.9e-50 205.3 162 63.6
MBI08_g38609_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.5e-46 193.0 164 64.0
MBI08_g40283_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.5e-46 193.0 164 64.0
SEGI_14640 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 9.1e-44 183.7 223 45.7
Lalb_Chr06g0173621 Lupinus albus HOM05D004602 ORTHO05D005906 5.5e-41 174.5 185 52.4
CDE04G0055 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 3.0e-39 168.7 163 58.3
MBI08_g39158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.7e-37 161.8 136 64.0
Hma1.2p1_0682F.1_g202500 Hydrangea macrophylla HOM05D004602 ORTHO05D005906 1.2e-35 156.8 118 68.6
MBI15_g38850_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.3e-29 136.7 142 58.5
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 4.1e-28 131.7 92 72.8
Lalb_Chr06g0173601 Lupinus albus HOM05D004602 ORTHO05D014120 4.5e-27 128.3 99 68.7
MBI13_g46003_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 7.2e-25 120.9 108 63.0
MBI05_g18177_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.8e-24 119.0 99 64.6
MBI11_g15185_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 6.8e-23 114.4 97 63.9
HanXRQChr05g0161121 Helianthus annuus HOM05D004602 ORTHO05D005906 7.5e-22 110.9 91 64.8
MBI05_g39343_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.4e-20 105.9 71 76.1
PGSC0003DMG400020858 Solanum tuberosum HOM05D004602 ORTHO05D005906 4.1e-20 105.1 108 53.7
FAN05G3456 Fragaria x ananassa HOM05D004602 ORTHO05D014120 1.2e-19 103.6 116 54.3
Psat7g124520 Pisum sativum HOM05D004602 ORTHO05D030491 2.0e-19 102.8 67 77.6
Psat7g124600 Pisum sativum HOM05D004602 ORTHO05D030491 2.0e-19 102.8 67 77.6
MELO3C008538.2 Cucumis melo HOM05D004602 ORTHO05D005906 2.9e-18 99.0 61 78.7
PGSC0003DMG400020862 Solanum tuberosum HOM05D004602 ORTHO05D005906 1.9e-17 96.3 97 53.6
MBI08_g05534_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.1e-16 92.8 64 75.0
MBI16_g48278_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.1e-16 92.8 66 71.2
Lalb_Chr06g0173611 Lupinus albus HOM05D004602 ORTHO05D005906 6.1e-16 91.3 57 82.5
MELO3C029978.2 Cucumis melo HOM05D004602 ORTHO05D000002 1.9e-12 79.7 61 67.2
PGSC0003DMG400004177 Solanum tuberosum HOM05D002370 ORTHO05D003878 1.2e-11 77.0 69 59.4
Rhsim06G0100000 Rhododendron simsii HOM05D004602 ORTHO05D005906 4.6e-11 75.1 92 45.7
COL.COLO4_34262 Corchorus olitorius HOM05D004602 ORTHO05D014120 1.3e-10 73.6 78 56.4
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 1.5e-09 70.1 56 60.7
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 8.0e-08 64.3 157 26.1
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 1.4e-07 63.5 160 26.2
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 2.3e-07 62.8 137 27.0
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 2.3e-07 62.8 137 26.3
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 4.0e-07 62.0 150 28.7
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 5.2e-07 61.6 137 26.3
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 5.2e-07 61.6 137 25.5
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 6.8e-07 61.2 137 26.3
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 6.8e-07 61.2 137 26.3
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 6.8e-07 61.2 137 26.3
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 6.8e-07 61.2 137 25.5
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 8.9e-07 60.8 150 27.3
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 2.0e-06 59.7 150 27.3
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 4.4e-06 58.5 118 41.5
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 5.8e-06 58.2 305 22.3
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 5.8e-06 58.2 305 22.3
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 5.8e-06 58.2 305 22.3
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 7.5e-06 57.8 305 22.0
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 7.5e-06 57.8 305 22.0
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 7.5e-06 57.8 136 25.0
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 7.5e-06 57.8 129 27.9


User provided reference genes

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