Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 3.8e-164 581.6 341 100.0
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 4.0e-121 438.7 337 71.8
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 2.0e-120 436.4 337 76.0
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 2.0e-120 436.4 337 70.6
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 2.7e-117 426.0 337 70.3
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.3e-116 423.7 337 70.3
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 6.6e-116 421.4 337 67.4
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 1.1e-115 420.6 337 68.8
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 1.9e-115 419.9 335 69.0
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 2.5e-115 419.5 337 68.2
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 7.3e-115 417.9 335 68.1
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 9.6e-115 417.5 337 68.0
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 9.6e-115 417.5 337 67.4
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 4.8e-114 415.2 337 67.4
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 6.2e-114 414.8 337 66.5
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 1.8e-113 413.3 338 67.2
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 2.4e-113 412.9 337 66.5
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 3.1e-113 412.5 337 68.5
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 4.0e-113 412.1 337 67.4
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 4.0e-113 412.1 333 65.8
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 5.3e-113 411.8 335 67.8
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 6.9e-113 411.4 337 72.7
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 6.9e-113 411.4 337 67.4
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 9.0e-113 411.0 337 66.5
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 9.0e-113 411.0 337 72.7
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 1.2e-112 410.6 337 66.2
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 2.6e-112 409.5 334 67.1
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 7.6e-112 407.9 337 67.7
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 7.6e-112 407.9 337 67.7
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 1.3e-111 407.1 337 66.2
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.2e-111 406.4 337 67.4
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 2.2e-111 406.4 337 70.0
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 4.9e-111 405.2 311 76.5
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 6.4e-111 404.8 337 67.1
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 8.4e-111 404.4 337 67.1
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 8.4e-111 404.4 337 65.0
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.1e-110 404.1 337 65.3
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.9e-110 403.3 337 73.6
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 2.4e-110 402.9 339 66.1
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 2.4e-110 402.9 337 70.0
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 2.4e-110 402.9 337 65.6
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 5.4e-110 401.7 337 64.4
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 5.4e-110 401.7 337 70.0
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 9.3e-110 401.0 337 65.6
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 3.5e-109 399.1 337 65.0
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 6.0e-109 398.3 337 64.7
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 1.7e-108 396.7 337 66.8
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 3.0e-108 396.0 326 66.6
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 5.1e-108 395.2 307 70.4
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.1e-107 394.0 337 63.8
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 1.9e-107 393.3 337 63.8
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 3.3e-107 392.5 337 63.8
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 5.6e-107 391.7 363 62.3
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 9.6e-107 391.0 337 62.9
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.3e-106 390.6 334 66.2
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.6e-106 390.2 334 65.9
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 2.8e-106 389.4 328 65.2
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.1e-105 387.5 337 70.0
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 1.1e-105 387.5 337 62.3
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 1.8e-105 386.7 337 70.6
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 2.4e-105 386.3 337 62.6
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 3.1e-105 386.0 386 58.5
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 4.0e-105 385.6 311 66.6
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 1.2e-104 384.0 337 69.4
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 1.5e-104 383.6 337 70.0
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.5e-104 382.1 337 68.8
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 2.2e-103 379.8 337 63.2
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 3.8e-103 379.0 337 62.9
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 1.1e-102 377.5 337 61.4
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.4e-102 377.1 337 68.8
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 1.4e-102 377.1 337 68.8
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 1.4e-102 377.1 337 61.7
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 3.0e-100 369.4 337 68.5
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 6.7e-100 368.2 263 74.5
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.1e-99 367.5 337 68.2
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.9e-99 366.7 333 66.1
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 1.9e-99 366.7 333 61.3
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.6e-98 363.6 337 68.0
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 3.7e-98 362.5 322 61.8
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 3.7e-98 362.5 337 68.5
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 6.2e-98 361.7 330 68.2
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 8.1e-98 361.3 331 60.7
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 6.9e-97 358.2 337 67.1
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 6.9e-97 358.2 337 67.1
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 9.0e-97 357.8 337 66.5
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 3.4e-96 355.9 323 61.6
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 7.6e-96 354.8 338 61.2
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 6.5e-95 351.7 337 64.7
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 1.6e-93 347.1 337 64.7
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 6.0e-93 345.1 337 59.1
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 1.9e-91 340.1 337 57.9
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 1.3e-90 337.4 337 62.6
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 4.8e-90 335.5 337 66.2
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 6.3e-90 335.1 337 62.9
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 1.1e-89 334.3 310 67.7
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 5.9e-88 328.6 365 54.5
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 6.1e-85 318.5 263 64.3
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 1.0e-84 317.8 338 55.9
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 3.9e-84 315.8 339 53.4
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 5.1e-84 315.5 263 63.1
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 4.3e-83 312.4 315 55.2
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 4.3e-83 312.4 337 53.7
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 1.3e-82 310.8 237 67.9
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 1.6e-82 310.5 338 63.0
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 4.1e-81 305.8 316 55.4
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 6.9e-81 305.1 285 61.1
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 6.9e-81 305.1 340 60.6
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 9.4e-78 294.7 328 55.5
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 1.0e-76 291.2 338 58.6
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 8.8e-76 288.1 338 51.2
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 8.8e-76 288.1 329 56.2
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 8.2e-74 281.6 317 51.7
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.0e-71 274.6 320 50.6
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 1.7e-71 273.9 264 59.1
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 2.2e-71 273.5 321 53.0
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 5.0e-71 272.3 318 51.3
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 3.2e-70 269.6 337 55.2
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 1.6e-69 267.3 315 50.8
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 3.6e-69 266.2 337 48.1
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 3.6e-69 266.2 337 55.8
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 6.1e-69 265.4 338 49.7
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 3.9e-68 262.7 340 50.0
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 5.7e-67 258.8 263 58.6
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 2.8e-66 256.5 240 59.2
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 4.8e-66 255.8 338 48.2
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 4.8e-66 255.8 338 48.2
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 6.3e-66 255.4 338 48.5
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 5.3e-65 252.3 338 47.9
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 4.5e-64 249.2 338 48.2
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.1e-62 244.6 339 46.6
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 3.0e-60 236.5 346 53.2
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 8.8e-60 235.0 344 45.9
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 1.2e-59 234.6 315 47.0
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 1.2e-59 234.6 315 47.6
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.5e-59 234.2 340 45.9
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.5e-59 234.2 299 49.8
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 2.0e-59 233.8 338 45.0
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 1.3e-58 231.1 338 46.2
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 1.7e-58 230.7 348 52.0
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 4.5e-56 222.6 338 41.7
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 5.9e-56 222.2 339 43.7
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 7.7e-56 221.9 313 44.1
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.8e-55 219.5 309 44.3
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 1.2e-53 214.5 281 48.8
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 2.7e-53 213.4 338 44.4
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 3.0e-52 209.9 339 39.2
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 1.5e-51 207.6 204 57.4
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 2.0e-51 207.2 300 45.7
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 9.8e-51 204.9 333 42.9
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 1.3e-50 204.5 166 62.7
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 5.4e-49 199.1 199 56.8
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 2.0e-48 197.2 212 54.7
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 7.2e-46 188.7 264 46.2
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 1.4e-44 184.5 337 39.5
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 1.8e-44 184.1 292 39.7
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 5.4e-41 172.6 339 36.3
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.6e-37 161.0 202 48.5
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 2.3e-36 157.1 215 46.5
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 3.0e-36 156.8 130 70.0
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 7.5e-35 152.1 164 71.3
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 2.9e-34 150.2 176 50.6
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.1e-33 148.3 297 40.1
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 3.6e-29 133.3 152 54.6
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 2.3e-23 114.0 309 31.4
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 3.0e-23 113.6 309 35.3
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 1.9e-17 94.4 312 31.1
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 1.3e-15 88.2 137 48.2
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 1.7e-15 87.8 238 31.5
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 1.7e-15 87.8 238 31.5
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 7.3e-14 82.4 312 37.2
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 4.7e-13 79.7 50 82.0
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 1.1e-12 78.6 49 85.7
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 2.9e-10 70.5 111 45.9
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 3.8e-10 70.1 111 45.9
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 5.6e-06 56.2 115 40.9


User provided reference genes

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