Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016410 Daucus carota HOM05D002201 ORTHO05D007560 1.9e-77 292.4 138 100.0
DCAR_004998 Daucus carota HOM05D001138 ORTHO05D007560 1.2e-23 113.6 111 58.6
DCAR_021655 Daucus carota HOM05D002201 ORTHO05D007560 5.8e-18 94.7 64 73.4
Dinv05805 Davidia involucrata HOM05D002201 ORTHO05D007560 1.9e-13 79.7 72 58.3
Sed0021770 Sechium edule HOM05D000566 ORTHO05D000686 5.6e-13 78.2 69 59.4
PGSC0003DMG400000804 Solanum tuberosum HOM05D002201 ORTHO05D007560 9.5e-13 77.4 71 59.2
HanXRQChr12g0365331 Helianthus annuus HOM05D002201 ORTHO05D007560 4.7e-12 75.1 71 52.1
Rhsim12G0080800 Rhododendron simsii HOM05D002201 ORTHO05D007560 4.7e-12 75.1 69 59.4
ECA233G2653 Erigeron canadensis HOM05D002201 ORTHO05D007560 8.1e-12 74.3 71 53.5
TAR629G2041 Trochodendron aralioides HOM05D002201 ORTHO05D007560 8.1e-12 74.3 75 54.7
CSS0023752 Camellia sinensis var. sinensis HOM05D000566 ORTHO05D000686 1.1e-11 73.9 70 55.7
Nitab4.5_0005803g0050 Nicotiana tabacum HOM05D002201 ORTHO05D007560 1.1e-11 73.9 71 56.3
CAN.G184.77 Capsicum annuum HOM05D002201 ORTHO05D007560 1.4e-11 73.6 71 56.3
CsaV3_5G033900 Cucumis sativus L. HOM05D002201 ORTHO05D007560 1.4e-11 73.6 69 55.1
Lj3C1021T1 Lonicera japonica HOM05D002201 ORTHO05D007560 1.4e-11 73.6 62 66.1
Nitab4.5_0004705g0030 Nicotiana tabacum HOM05D002201 ORTHO05D007560 1.4e-11 73.6 71 56.3
vmacro01361 Vaccinium macrocarpon HOM05D002201 ORTHO05D007560 1.4e-11 73.6 72 55.6
Migut.E00290 Erythranthe guttata HOM05D002201 ORTHO05D007560 1.8e-11 73.2 65 60.0
Cc11_g10720 Coffea canephora HOM05D002201 ORTHO05D007560 2.3e-11 72.8 72 50.0
Solyc05g009940.4 Solanum lycopersicum HOM05D002201 ORTHO05D007560 2.3e-11 72.8 71 56.3
Sopen05g005750 Solanum pennellii HOM05D002201 ORTHO05D007560 2.3e-11 72.8 71 56.3
Lsat_1_v5_gn_8_37461 Lactuca sativa HOM05D002201 ORTHO05D007560 3.1e-11 72.4 65 52.3
Peaxi162Scf00367g00735 Petunia axillaris HOM05D002201 ORTHO05D007560 3.1e-11 72.4 71 54.9
ClCG05G023090 Citrullus lanatus HOM05D002201 ORTHO05D007560 4.0e-11 72.0 69 53.6
MELO3C012208.2 Cucumis melo HOM05D002201 ORTHO05D007560 4.0e-11 72.0 69 53.6
Sabra10G0099800 Salix brachista HOM05D002201 ORTHO05D007560 4.0e-11 72.0 69 55.1
Aa31LG2G6630 Aethionema arabicum HOM05D002201 ORTHO05D007560 5.2e-11 71.6 66 54.5
MSTRG.13500 Avicennia marina HOM05D002201 ORTHO05D007560 1.2e-10 70.5 52 71.2
Oeu024102.2 Olea europaea HOM05D002201 ORTHO05D007560 1.2e-10 70.5 72 50.0
Thecc.02G362600 Theobroma cacao HOM05D002201 ORTHO05D007560 1.5e-10 70.1 70 52.9
BcaB07g30634 Brassica carinata HOM05D002201 ORTHO05D007560 2.0e-10 69.7 54 63.0
Actinidia13681 Actinidia chinensis HOM05D002201 ORTHO05D007560 2.6e-10 69.3 72 52.8
Actinidia38400 Actinidia chinensis HOM05D002201 ORTHO05D007560 2.6e-10 69.3 72 55.6
Thhalv10003928m.g Eutrema salsugineum HOM05D002201 ORTHO05D007560 3.4e-10 68.9 57 57.9
FvH4_4g28210 Fragaria vesca HOM05D002201 ORTHO05D007560 3.4e-10 68.9 65 55.4
FAN12G2404 Fragaria x ananassa HOM05D002201 ORTHO05D007560 3.4e-10 68.9 65 55.4
Psat2g090640 Pisum sativum HOM05D002201 ORTHO05D007560 4.4e-10 68.6 71 49.3
Atru.chr11.1374 Acer truncatum HOM05D002201 ORTHO05D007560 5.8e-10 68.2 70 52.9
COL.COLO4_07858 Corchorus olitorius HOM05D000566 ORTHO05D000686 5.8e-10 68.2 67 55.2
BcaC04g21422 Brassica carinata HOM05D002201 ORTHO05D007560 7.5e-10 67.8 54 61.1
CiPaw.15G002600 Carya illinoinensis HOM05D002201 ORTHO05D007560 7.5e-10 67.8 69 49.3
Duzib248G1574 Durio zibethinus HOM05D002201 ORTHO05D007560 7.5e-10 67.8 70 52.9
Potri.010G131000 Populus trichocarpa HOM05D002201 ORTHO05D007560 7.5e-10 67.8 69 52.2
RcHm_v2.0_Chr4g0435981 Rosa chinensis HOM05D002201 ORTHO05D007560 7.5e-10 67.8 65 53.8
A09p24930 Brassica napus HOM05D002201 ORTHO05D007560 9.8e-10 67.4 54 59.3
C09p31960 Brassica napus HOM05D002201 ORTHO05D007560 9.8e-10 67.4 54 59.3
BolC9t56050H Brassica oleracea HOM05D002201 ORTHO05D007560 9.8e-10 67.4 54 59.3
FAN07G1361 Fragaria x ananassa HOM05D002201 ORTHO05D007560 9.8e-10 67.4 65 53.8
MD16G1049600 Malus domestica HOM05D002201 ORTHO05D007560 9.8e-10 67.4 53 62.3
Prupe.1G304100 Prunus persica HOM05D002201 ORTHO05D007560 9.8e-10 67.4 54 61.1
Sp2g14940 Schrenkiella parvula HOM05D002201 ORTHO05D007560 9.8e-10 67.4 57 57.9
THA.LOC104825717 Tarenaya hassleriana HOM05D002201 ORTHO05D007560 9.8e-10 67.4 55 56.4
AL5G14220 Arabidopsis lyrata HOM05D002201 ORTHO05D007560 1.3e-09 67.0 61 55.7
BraA09t38081Z Brassica rapa HOM05D002201 ORTHO05D007560 1.7e-09 66.6 51 60.8
Carub.0005s0350 Capsella rubella HOM05D002201 ORTHO05D007560 1.7e-09 66.6 52 61.5
Glyma.02G101200 Glycine max HOM05D002201 ORTHO05D007560 1.7e-09 66.6 71 47.9
SGA_v2.0_scaffold14G06814 Striga asiatica HOM05D002201 ORTHO05D007560 1.7e-09 66.6 70 54.3
AT3G25680 Arabidopsis thaliana HOM05D002201 ORTHO05D007560 2.9e-09 65.9 52 61.5
TWI79G0162 Tripterygium wilfordii HOM05D002201 ORTHO05D007560 2.9e-09 65.9 70 52.9
VMungo1215G1906 Vigna mungo HOM05D002201 ORTHO05D007560 2.9e-09 65.9 68 50.0
Eucgr.G02358 Eucalyptus grandis HOM05D002201 ORTHO05D007560 3.7e-09 65.5 53 62.3
MBI16_g33830_MAGBIO Magnolia biondii HOM05D002201 ORTHO05D007560 4.9e-09 65.1 55 58.2
FAN17G2361 Fragaria x ananassa HOM05D002201 ORTHO05D007560 6.4e-09 64.7 65 52.3
Gohir.D12G174400 Gossypium hirsutum HOM05D002201 ORTHO05D007560 6.4e-09 64.7 68 54.4
Gorai.008G187100 Gossypium raimondii HOM05D002201 ORTHO05D007560 6.4e-09 64.7 68 54.4
MBI16_g46926_MAGBIO Magnolia biondii HOM05D002201 ORTHO05D007560 6.4e-09 64.7 54 57.4
Medtr5g053260 Medicago truncatula HOM05D002201 ORTHO05D007560 6.4e-09 64.7 71 49.3
Lj2g0021982 Lotus japonicus HOM05D002201 ORTHO05D007560 8.3e-09 64.3 71 49.3
Lalb_Chr17g0341861 Lupinus albus HOM05D002201 ORTHO05D007560 8.3e-09 64.3 70 47.1
Nn4g23699 Nelumbo nucifera HOM05D002201 ORTHO05D007560 8.3e-09 64.3 60 55.0
Cfa018644 Carpinus fangiana HOM05D002201 ORTHO05D007560 1.1e-08 63.9 53 54.7
Haze_17425 Corylus avellana HOM05D002201 ORTHO05D007560 1.1e-08 63.9 53 54.7
Glyma.01G089500 Glycine max HOM05D002201 ORTHO05D007560 1.1e-08 63.9 71 46.5
Os06g0499000 Oryza sativa ssp. japonica HOM05D002201 ORTHO05D007560 1.1e-08 63.9 48 60.4
TWI75G0366 Tripterygium wilfordii HOM05D002201 ORTHO05D007560 1.1e-08 63.9 70 48.6
arahy.Tifrunner.gnm1.ann1.60XZVP Arachis hypogaea HOM05D002201 ORTHO05D007560 1.9e-08 63.2 57 56.1
CARHR288540 Cardamine hirsuta HOM05D002201 ORTHO05D007560 1.9e-08 63.2 52 57.7
Oeu044619.4 Olea europaea HOM05D002201 ORTHO05D007560 1.9e-08 63.2 48 64.6
PGR119G1960 Punica granatum HOM05D002201 ORTHO05D007560 1.9e-08 63.2 69 50.7
arahy.Tifrunner.gnm1.ann1.D2MQ0U Arachis hypogaea HOM05D002201 ORTHO05D007560 2.4e-08 62.8 58 53.4
Manes.06G073300 Manihot esculenta HOM05D002201 ORTHO05D007560 2.4e-08 62.8 66 51.5
CANSAT64G2925 Cannabis sativa HOM05D002201 ORTHO05D007560 3.2e-08 62.4 52 59.6
Lalb_Chr04g0254971 Lupinus albus HOM05D002201 ORTHO05D007560 5.4e-08 61.6 71 45.1
Phvul.003G026000 Phaseolus vulgaris HOM05D002201 ORTHO05D007560 5.4e-08 61.6 71 45.1
MD13G1047900 Malus domestica HOM05D002201 ORTHO05D007560 7.1e-08 61.2 54 57.4
PSO063G3066 Papaver somniferum HOM05D002201 ORTHO05D007560 9.2e-08 60.8 63 46.0
TPR.G20820 Trifolium pratense HOM05D002201 ORTHO05D007560 1.2e-07 60.5 84 41.7
HPP92_010273 Vanilla planifolia HOM05D002201 ORTHO05D007560 1.2e-07 60.5 53 54.7
Gohir.A12G172000 Gossypium hirsutum HOM05D002201 ORTHO05D007560 2.1e-07 59.7 68 50.0
QL01p001010 Quercus lobata HOM05D002201 ORTHO05D007560 2.1e-07 59.7 53 56.6
SalBow8G3742 Salvia bowleyana HOM05D002201 ORTHO05D007560 2.1e-07 59.7 45 66.7
EL10Ac6g14517 Beta vulgaris HOM05D002201 ORTHO05D007560 2.7e-07 59.3 53 54.7
Cpa.g.c29023.2 Carica papaya HOM05D002201 ORTHO05D007560 2.7e-07 59.3 69 46.4
Ciclev10031108m.g Citrus clementina HOM05D002201 ORTHO05D007560 2.7e-07 59.3 70 44.3
Ca_05686_v3 Cicer arietinum L. HOM05D002201 ORTHO05D007560 3.5e-07 58.9 71 46.5
Zm00001eb281400 Zea mays HOM05D002201 ORTHO05D007560 3.5e-07 58.9 72 47.2
Zm00001eb382040 Zea mays HOM05D002201 ORTHO05D007560 3.5e-07 58.9 48 56.2
AUR62002931 Chenopodium quinoa HOM05D002201 ORTHO05D007560 7.8e-07 57.8 65 47.7
GSVIVG01011967001 Vitis vinifera HOM05D002201 ORTHO05D007560 7.8e-07 57.8 68 45.6
AUR62007741 Chenopodium quinoa HOM05D002201 ORTHO05D007560 1.7e-06 56.6 49 57.1
DCAR_010415 Daucus carota HOM05D002676 ORTHO05D003194 2.3e-06 56.2 31 80.6
Hund25106 Selenicereus undatus HOM05D002201 ORTHO05D007560 2.3e-06 56.2 65 47.7
SEGI_16530 Sequoiadendron giganteum HOM05D002201 ORTHO05D007560 2.3e-06 56.2 51 51.0
SEGI_37768 Sequoiadendron giganteum HOM05D002201 ORTHO05D007560 2.3e-06 56.2 51 51.0
Pp3c23_21530 Physcomitrium patens HOM05D002201 ORTHO05D005125 3.0e-06 55.8 67 49.3
DCAR_029681 Daucus carota HOM05D000076 ORTHO05D013791 3.9e-06 55.5 28 89.3
Manes.14G096500 Manihot esculenta HOM05D002201 ORTHO05D007560 8.6e-06 54.3 47 55.3


User provided reference genes

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