Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_015256 Daucus carota HOM05D005673 ORTHO05D007081 7.6e-175 617.1 313 100.0
Lj1A928T62 Lonicera japonica HOM05D005673 ORTHO05D007081 1.2e-76 290.8 317 51.4
Lj1A926T37 Lonicera japonica HOM05D005673 ORTHO05D007081 3.6e-76 289.3 317 51.1
CSS0045417 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 5.8e-74 282.0 317 50.5
Actinidia38234 Actinidia chinensis HOM05D005673 ORTHO05D007081 1.7e-73 280.4 315 52.1
ECA233G0150 Erigeron canadensis HOM05D005673 ORTHO05D007081 1.7e-73 280.4 315 49.2
Ciclev10032487m.g Citrus clementina HOM05D005673 ORTHO05D007081 3.7e-73 279.3 312 51.0
CSS0019421 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 4.9e-73 278.9 317 49.8
Lsat_1_v5_gn_8_21281 Lactuca sativa HOM05D005673 ORTHO05D007081 1.2e-71 274.2 325 49.8
Duzib114G0197 Durio zibethinus HOM05D005673 ORTHO05D007081 3.5e-71 272.7 316 50.9
Thecc.10G064600 Theobroma cacao HOM05D005673 ORTHO05D007081 3.5e-71 272.7 316 49.7
GSVIVG01032643001 Vitis vinifera HOM05D005673 ORTHO05D007081 3.5e-71 272.7 313 51.1
HanXRQChr08g0219361 Helianthus annuus HOM05D005673 ORTHO05D007081 4.6e-71 272.3 318 48.7
MSTRG.9191 Avicennia marina HOM05D005673 ORTHO05D007081 7.8e-71 271.6 315 47.6
CiPaw.02G177700 Carya illinoinensis HOM05D005673 ORTHO05D007081 2.3e-70 270.0 317 47.6
Actinidia03012 Actinidia chinensis HOM05D005673 ORTHO05D007081 1.1e-69 267.7 315 49.8
Nitab4.5_0002078g0030 Nicotiana tabacum HOM05D005673 ORTHO05D007081 1.5e-69 267.3 313 48.2
Manes.07G105200 Manihot esculenta HOM05D005673 ORTHO05D007081 1.9e-69 266.9 321 47.4
QL08p057314 Quercus lobata HOM05D005673 ORTHO05D007081 1.9e-69 266.9 319 49.8
Nitab4.5_0000575g0020 Nicotiana tabacum HOM05D005673 ORTHO05D007081 2.5e-69 266.5 313 47.6
PGSC0003DMG400002916 Solanum tuberosum HOM05D005673 ORTHO05D007081 2.5e-69 266.5 306 47.7
PGR142G2170 Punica granatum HOM05D005673 ORTHO05D007081 3.3e-69 266.2 323 48.0
Hund22450 Selenicereus undatus HOM05D005673 ORTHO05D007081 4.3e-69 265.8 324 47.2
SalBow4G0159 Salvia bowleyana HOM05D005673 ORTHO05D007081 5.6e-69 265.4 306 47.1
TWI38G1168 Tripterygium wilfordii HOM05D005673 ORTHO05D007081 1.2e-68 264.2 315 49.5
Solyc12g009500.2 Solanum lycopersicum HOM05D005673 ORTHO05D007081 3.6e-68 262.7 309 46.9
Sopen12g004500 Solanum pennellii HOM05D005673 ORTHO05D007081 4.7e-68 262.3 309 46.0
FAN10G0505 Fragaria x ananassa HOM05D005673 ORTHO05D007081 6.2e-68 261.9 311 49.8
FvH4_7g20560 Fragaria vesca HOM05D005673 ORTHO05D007081 8.1e-68 261.5 311 49.5
FAN06G0951 Fragaria x ananassa HOM05D005673 ORTHO05D007081 8.1e-68 261.5 311 49.5
PSO384G5123 Papaver somniferum HOM05D005673 ORTHO05D007081 1.1e-67 261.2 314 50.6
FAN03G2886 Fragaria x ananassa HOM05D005673 ORTHO05D007081 1.4e-67 260.8 311 49.5
FAN06G2416 Fragaria x ananassa HOM05D005673 ORTHO05D007081 1.8e-67 260.4 311 49.5
Potri.008G046400 Populus trichocarpa HOM05D005673 ORTHO05D007081 1.8e-67 260.4 317 48.9
Sabra08G0032600 Salix brachista HOM05D005673 ORTHO05D007081 1.8e-67 260.4 317 48.9
FAN01G1496 Fragaria x ananassa HOM05D005673 ORTHO05D007081 2.3e-67 260.0 311 49.2
FAN01G2008 Fragaria x ananassa HOM05D005673 ORTHO05D007081 2.3e-67 260.0 311 49.2
PSO339G1442 Papaver somniferum HOM05D005673 ORTHO05D007081 2.3e-67 260.0 314 50.0
CAN.G551.89 Capsicum annuum HOM05D005673 ORTHO05D007081 3.1e-67 259.6 308 47.7
COL.COLO4_08204 Corchorus olitorius HOM05D005673 ORTHO05D007081 4.0e-67 259.2 316 48.4
THA.LOC104825722 Tarenaya hassleriana HOM05D005673 ORTHO05D007081 4.0e-67 259.2 323 49.2
Aqoxy4G03141 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 6.8e-67 258.5 320 46.6
MD07G1182600 Malus domestica HOM05D005673 ORTHO05D007081 1.5e-66 257.3 313 48.2
MD01G1114500 Malus domestica HOM05D005673 ORTHO05D007081 2.0e-66 256.9 313 47.3
Gohir.D06G174000 Gossypium hirsutum HOM05D005673 ORTHO05D007081 3.4e-66 256.1 316 49.1
Gorai.010G203600 Gossypium raimondii HOM05D005673 ORTHO05D007081 4.4e-66 255.8 316 49.1
Haze_16957 Corylus avellana HOM05D005673 ORTHO05D007081 7.5e-66 255.0 317 46.4
MBI14_g17793_MAGBIO Magnolia biondii HOM05D005673 ORTHO05D007081 1.3e-65 254.2 305 47.5
Cfa001572 Carpinus fangiana HOM05D005673 ORTHO05D007081 2.2e-65 253.4 317 46.4
SGA_v2.0_scaffold62G21443 Striga asiatica HOM05D005673 ORTHO05D007081 2.9e-65 253.1 306 45.8
CARHR261110 Cardamine hirsuta HOM05D005673 ORTHO05D007081 8.3e-65 251.5 323 48.6
Lj1g0007847 Lotus japonicus HOM05D005673 ORTHO05D007081 2.4e-64 250.0 313 47.3
Gohir.A06G179004 Gossypium hirsutum HOM05D005673 ORTHO05D007081 9.2e-64 248.1 316 48.1
Cfa005598 Carpinus fangiana HOM05D005673 ORTHO05D007081 2.1e-63 246.9 317 45.1
AUR62036006 Chenopodium quinoa HOM05D005673 ORTHO05D007081 2.1e-63 246.9 322 45.3
A09p28870 Brassica napus HOM05D005673 ORTHO05D007081 4.6e-63 245.7 317 47.0
EL10Ac2g03532 Beta vulgaris HOM05D005673 ORTHO05D007081 6.0e-63 245.4 320 46.2
Carub.0006s2866 Capsella rubella HOM05D005673 ORTHO05D007081 6.0e-63 245.4 324 48.5
Lalb_Chr19g0126251 Lupinus albus HOM05D005673 ORTHO05D007081 6.0e-63 245.4 320 45.3
RcHm_v2.0_Chr1g0364441 Rosa chinensis HOM05D005673 ORTHO05D007081 6.0e-63 245.4 311 47.6
Sp6g07430 Schrenkiella parvula HOM05D005673 ORTHO05D007081 7.8e-63 245.0 324 47.5
AL6G43874 Arabidopsis lyrata HOM05D005673 ORTHO05D007081 1.0e-62 244.6 323 47.4
Thhalv10028887m.g Eutrema salsugineum HOM05D005673 ORTHO05D007081 1.7e-62 243.8 321 48.3
Cc09_g02320 Coffea canephora HOM05D005673 ORTHO05D007081 3.0e-62 243.0 314 44.6
BcaC04g21010 Brassica carinata HOM05D005673 ORTHO05D007081 3.9e-62 242.7 317 46.7
C09p36690 Brassica napus HOM05D005673 ORTHO05D007081 3.9e-62 242.7 317 46.7
BolC9t56500H Brassica oleracea HOM05D005673 ORTHO05D007081 3.9e-62 242.7 317 46.7
AT4G10090 Arabidopsis thaliana HOM05D005673 ORTHO05D007081 5.1e-62 242.3 323 47.4
CANSAT11G2273 Cannabis sativa HOM05D005673 ORTHO05D007081 1.1e-61 241.1 306 46.7
Aa31LG9G11910 Aethionema arabicum HOM05D005673 ORTHO05D007081 4.3e-61 239.2 323 46.1
BcaB01g01447 Brassica carinata HOM05D005673 ORTHO05D007081 1.2e-60 237.7 326 46.3
Glyma.08G340700 Glycine max HOM05D005673 ORTHO05D007081 3.6e-60 236.1 319 43.3
Ah.16g108000 Amaranthus hybridus HOM05D005673 ORTHO05D007081 4.7e-60 235.7 332 44.9
CsaV3_5G006400 Cucumis sativus L. HOM05D005673 ORTHO05D007081 3.1e-59 233.0 312 45.2
Rhsim03G0121300 Rhododendron simsii HOM05D005673 ORTHO05D007081 3.1e-59 233.0 285 46.7
arahy.Tifrunner.gnm1.ann1.R12QR1 Arachis hypogaea HOM05D005673 ORTHO05D007081 5.2e-59 232.3 314 42.7
Eucgr.G02786 Eucalyptus grandis HOM05D005673 ORTHO05D007081 5.2e-59 232.3 318 43.1
TAR623G0755 Trochodendron aralioides HOM05D005673 ORTHO05D007081 2.0e-58 230.3 280 48.6
Oeu008278.1 Olea europaea HOM05D005673 ORTHO05D007081 3.4e-58 229.6 272 48.2
TPR.G10191 Trifolium pratense HOM05D005673 ORTHO05D007081 5.8e-58 228.8 309 43.7
Sed0006326 Sechium edule HOM05D005673 ORTHO05D007081 7.6e-58 228.4 320 42.8
Phvul.008G138600 Phaseolus vulgaris HOM05D005673 ORTHO05D007081 9.9e-58 228.0 318 42.5
arahy.Tifrunner.gnm1.ann1.YNZN7C Arachis hypogaea HOM05D005673 ORTHO05D007081 1.7e-57 227.3 314 41.7
ClCG02G013770 Citrullus lanatus HOM05D005673 ORTHO05D007081 1.7e-57 227.3 315 44.1
Atru.BG.271.p Acer truncatum HOM05D005673 ORTHO05D007081 2.2e-57 226.9 291 44.3
MELO3C011718.2 Cucumis melo HOM05D005673 ORTHO05D007081 4.9e-57 225.7 314 45.2
Migut.F02013 Erythranthe guttata HOM05D005673 ORTHO05D007081 4.9e-57 225.7 294 44.2
Ca_07421_v3 Cicer arietinum L. HOM05D005673 ORTHO05D007081 8.4e-57 224.9 308 42.2
Prupe.2G221200 Prunus persica HOM05D005673 ORTHO05D007081 1.4e-56 224.2 269 48.3
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 9.2e-56 221.5 310 40.0
vmacro07099 Vaccinium macrocarpon HOM05D005673 ORTHO05D007081 9.2e-56 221.5 280 47.1
HPP92_012063 Vanilla planifolia HOM05D005673 ORTHO05D007081 6.0e-55 218.8 320 41.9
Sc20g0002250 Simmondsia chinensis HOM05D005673 ORTHO05D007081 5.6e-53 212.2 287 44.9
Atru.chr12.608 Acer truncatum HOM05D005673 ORTHO05D007081 2.4e-48 196.8 153 61.4
Zm00001eb378810 Zea mays HOM05D005673 ORTHO05D007081 3.2e-48 196.4 305 39.0
Os03g0284000 Oryza sativa ssp. japonica HOM05D005673 ORTHO05D007081 3.9e-46 189.5 305 37.4
Peaxi162Scf00170g00413 Petunia axillaris HOM05D005673 ORTHO05D007081 1.1e-43 181.4 305 37.4
AUR62041616 Chenopodium quinoa HOM05D005673 ORTHO05D007081 2.2e-41 173.7 322 36.3
Nn2g10602 Nelumbo nucifera HOM05D005673 ORTHO05D007081 3.8e-41 172.9 289 41.2
Dinv25934 Davidia involucrata HOM05D005673 ORTHO05D007081 6.4e-41 172.2 224 46.4
SGA_v2.0_scaffold17G08196 Striga asiatica HOM05D005673 ORTHO05D007081 6.7e-38 162.2 144 54.2
VMungo1383G1385 Vigna mungo HOM05D005673 ORTHO05D007081 3.3e-37 159.8 147 52.4
MD00G1166800 Malus domestica HOM05D005673 ORTHO05D007081 1.6e-36 157.5 170 48.8
Medtr7g047440 Medicago truncatula HOM05D005673 ORTHO05D007081 5.3e-35 152.5 147 51.7
Medtr7g451610 Medicago truncatula HOM05D005673 ORTHO05D007081 5.3e-35 152.5 147 51.7
Medtr7g451710 Medicago truncatula HOM05D005673 ORTHO05D007081 5.3e-35 152.5 147 51.7
Hma1.2p1_0348F.1_g131860 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 1.2e-34 151.4 213 43.7
Mapoly0003s0199 Marchantia polymorpha HOM05D005673 ORTHO05D007081 8.4e-33 145.2 307 32.6
HPP92_012075 Vanilla planifolia HOM05D005673 ORTHO05D007081 4.2e-32 142.9 205 46.3
unitig_37.g12298 Utricularia gibba HOM05D005673 ORTHO05D007081 1.8e-30 137.5 122 53.3
Psat0s9937g0040 Pisum sativum HOM05D005673 ORTHO05D007081 2.5e-29 133.7 112 58.9
Pp3c2_31740 Physcomitrium patens HOM05D005673 ORTHO05D007081 6.2e-28 129.0 318 29.2
Psat3g152960 Pisum sativum HOM05D005673 ORTHO05D007081 9.0e-27 125.2 110 54.5
AagrBONN_evm.TU.Sc2ySwM_362.1467 Anthoceros agrestis HOM05D005673 ORTHO05D007081 4.9e-25 119.4 281 31.3
SMO347G0616 Selaginella moellendorffii HOM05D005673 ORTHO05D007081 9.3e-24 115.2 258 32.2
Psat3g152920 Pisum sativum HOM05D005673 ORTHO05D007081 1.3e-22 111.3 98 57.1
PSO713G0026 Papaver somniferum HOM05D005673 ORTHO05D007081 1.8e-22 110.9 91 61.5
HanXRQChr02g0043631 Helianthus annuus HOM05D005673 ORTHO05D007081 1.3e-20 104.8 102 53.9
Psat3g153040 Pisum sativum HOM05D005673 ORTHO05D007081 2.2e-20 104.0 96 55.2
unitig_37.g12299 Utricularia gibba HOM05D005673 ORTHO05D007081 3.7e-20 103.2 85 55.3
Hma1.2p1_0348F.1_g131840 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 5.3e-19 99.4 81 67.9
Aqoxy4G03136 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 1.6e-15 87.8 225 32.4
Cpa.g.c44350 Carica papaya HOM05D005673 ORTHO05D007081 1.6e-15 87.8 77 59.7
HanXRQChr13g0394111 Helianthus annuus HOM05D005673 ORTHO05D007081 1.4e-14 84.7 81 49.4
Medtr7g050450 Medicago truncatula HOM05D005673 ORTHO05D007081 2.3e-14 84.0 168 33.3
VMungo1383G3547 Vigna mungo HOM05D005673 ORTHO05D007081 2.3e-14 84.0 78 52.6
BcaB04g18418 Brassica carinata HOM05D005673 ORTHO05D007081 1.3e-12 78.2 103 48.5
Cpa.g.sc5360.1 Carica papaya HOM05D005673 ORTHO05D007081 8.2e-12 75.5 48 72.9
CBR_g23354 Chara braunii HOM05D005673 ORTHO05D007081 2.6e-10 70.5 164 31.1
HanXRQChr12g0360941 Helianthus annuus HOM05D005673 ORTHO05D007081 3.6e-07 60.1 44 59.1
MD01G1114600 Malus domestica HOM05D005673 ORTHO05D007081 1.0e-06 58.5 60 53.3


User provided reference genes

Program Settings