Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_014988 Daucus carota HOM05D006740 ORTHO05D008571 2.8e-58 228.4 115 100.0
MBI14_g24889_MAGBIO Magnolia biondii HOM05D006740 ORTHO05D008571 1.6e-29 132.9 114 58.8
ATR0048G002 Amborella trichopoda HOM05D006740 ORTHO05D008571 2.3e-28 129.0 111 59.5
CSS0044827 Camellia sinensis var. sinensis HOM05D006740 ORTHO05D008571 1.1e-25 120.2 105 60.0
BraA03t11298Z Brassica rapa HOM05D006740 ORTHO05D008571 2.0e-24 115.9 116 56.9
A03p20550 Brassica napus HOM05D006740 ORTHO05D008571 4.5e-24 114.8 116 56.0
VMungo0251G0948 Vigna mungo HOM05D006740 ORTHO05D008571 4.2e-22 108.2 80 66.2
Phvul.002G180100 Phaseolus vulgaris HOM05D006740 ORTHO05D008571 1.6e-21 106.3 80 63.8
Thhalv10017966m.g Eutrema salsugineum HOM05D006740 ORTHO05D008571 3.9e-20 101.7 116 50.9
Lalb_Chr07g0187591 Lupinus albus HOM05D006740 ORTHO05D008571 6.7e-20 100.9 80 61.2
ClCG06G012850 Citrullus lanatus HOM05D006740 ORTHO05D008571 8.7e-20 100.5 80 63.8
CAN.G1251.7 Capsicum annuum HOM05D006740 ORTHO05D008571 1.9e-19 99.4 86 60.5
CDE05G3024 Ceratophyllum demersum HOM05D006740 ORTHO05D008571 2.5e-19 99.0 84 60.7
Aqoxy1G01281 Aquilegia oxysepala HOM05D006740 ORTHO05D008571 5.7e-19 97.8 84 60.7
Nn1g00512 Nelumbo nucifera HOM05D006740 ORTHO05D008571 7.4e-19 97.4 85 57.6
Sed0019079 Sechium edule HOM05D006740 ORTHO05D008571 7.4e-19 97.4 84 58.3
Nn5g27420 Nelumbo nucifera HOM05D006740 ORTHO05D008571 1.6e-18 96.3 85 56.5
Sed0004940 Sechium edule HOM05D006740 ORTHO05D008571 4.8e-18 94.7 84 57.1
PSO675G3058 Papaver somniferum HOM05D006740 ORTHO05D008571 6.3e-18 94.4 87 57.5
arahy.Tifrunner.gnm1.ann1.WXAM3F Arachis hypogaea HOM05D006740 ORTHO05D008571 8.2e-18 94.0 84 59.5
arahy.Tifrunner.gnm1.ann1.PKM4A5 Arachis hypogaea HOM05D006740 ORTHO05D008571 1.4e-17 93.2 84 59.5
Carub.0004s1913 Capsella rubella HOM05D006740 ORTHO05D008571 1.8e-17 92.8 93 57.0
PSO541G6013 Papaver somniferum HOM05D006740 ORTHO05D008571 2.4e-17 92.4 85 57.6
TPR.G37863 Trifolium pratense HOM05D006740 ORTHO05D008571 3.1e-17 92.0 77 58.4
Sp4g19550 Schrenkiella parvula HOM05D006740 ORTHO05D008571 2.0e-16 89.4 91 54.9
PGR004G1979 Punica granatum HOM05D006740 ORTHO05D008571 2.6e-16 89.0 70 62.9
Sed0027887 Sechium edule HOM05D006740 ORTHO05D008571 7.7e-16 87.4 66 68.2
THA.LOC104806598 Tarenaya hassleriana HOM05D006740 ORTHO05D008571 1.3e-15 86.7 93 54.8
C03p24150 Brassica napus HOM05D006740 ORTHO05D008571 6.5e-15 84.3 87 55.2
MELO3C010175.2 Cucumis melo HOM05D006740 ORTHO05D008571 8.5e-15 84.0 85 51.8
MSTRG.19161 Avicennia marina HOM05D006740 ORTHO05D008571 3.2e-14 82.0 69 62.3
BolC3t14808H Brassica oleracea HOM05D006740 ORTHO05D008571 3.2e-14 82.0 86 54.7
AL4G33600 Arabidopsis lyrata HOM05D006740 ORTHO05D008571 4.2e-14 81.6 87 52.9
SalBow1G5626 Salvia bowleyana HOM05D007352 ORTHO05D009389 5.5e-14 81.3 90 48.9
CARHR132360 Cardamine hirsuta HOM05D006740 ORTHO05D008571 7.2e-14 80.9 87 52.9
COL.COLO4_05681 Corchorus olitorius HOM05D006740 ORTHO05D008571 7.2e-14 80.9 64 65.6
Gohir.A02G001400 Gossypium hirsutum HOM05D006740 ORTHO05D008571 7.2e-14 80.9 61 68.9
Gohir.D02G001700 Gossypium hirsutum HOM05D006740 ORTHO05D008571 7.2e-14 80.9 61 68.9
Gorai.005G002200 Gossypium raimondii HOM05D006740 ORTHO05D008571 7.2e-14 80.9 61 68.9
AT2G37230 Arabidopsis thaliana HOM05D006740 ORTHO05D008571 1.2e-13 80.1 87 51.7
EL10Ac2g03436 Beta vulgaris HOM05D006740 ORTHO05D008571 1.6e-13 79.7 66 60.6
AUR62029073 Chenopodium quinoa HOM05D006740 ORTHO05D008571 2.7e-13 79.0 71 54.9
Migut.J00539 Erythranthe guttata HOM05D006740 ORTHO05D008571 2.7e-13 79.0 69 58.0
CsaV3_1G029410 Cucumis sativus L. HOM05D006740 ORTHO05D008571 3.6e-13 78.6 85 48.2
Aa31LG5G22560 Aethionema arabicum HOM05D006740 ORTHO05D008571 4.6e-13 78.2 86 48.8
HPP92_008974 Vanilla planifolia HOM05D006740 ORTHO05D008571 5.1e-12 74.7 80 47.5
Sc14g0006060 Simmondsia chinensis HOM05D006740 ORTHO05D008571 6.7e-12 74.3 64 59.4
DCAR_017698 Daucus carota HOM05D006740 ORTHO05D008571 1.1e-11 73.6 47 72.3
SalBow3G2352 Salvia bowleyana HOM05D006740 ORTHO05D008571 1.5e-11 73.2 69 59.4
SEGI_00408 Sequoiadendron giganteum HOM05D006740 ORTHO05D009920 4.3e-11 71.6 109 33.0
SEGI_40563 Sequoiadendron giganteum HOM05D006740 ORTHO05D009920 1.3e-10 70.1 105 33.3
Os02g0110400 Oryza sativa ssp. japonica HOM05D006740 ORTHO05D008571 1.7e-10 69.7 69 50.7
Glyma.08G098100 Glycine max HOM05D006740 ORTHO05D008571 2.8e-10 68.9 51 64.7
FvH4_5g34800 Fragaria vesca HOM05D006740 ORTHO05D008571 3.1e-09 65.5 49 57.1
FAN08G1176 Fragaria x ananassa HOM05D006740 ORTHO05D008571 3.1e-09 65.5 49 57.1
FAN18G1734 Fragaria x ananassa HOM05D006740 ORTHO05D008571 3.1e-09 65.5 49 57.1
AUR62031649 Chenopodium quinoa HOM05D006740 ORTHO05D008571 4.1e-09 65.1 48 60.4
FAN04G2606 Fragaria x ananassa HOM05D006740 ORTHO05D008571 4.1e-09 65.1 49 57.1
FAN13G2385 Fragaria x ananassa HOM05D006740 ORTHO05D008571 4.1e-09 65.1 49 57.1
Medtr2g437460 Medicago truncatula HOM05D006740 ORTHO05D008571 4.1e-09 65.1 51 56.9
Zm00001eb229640 Zea mays HOM05D006740 ORTHO05D008571 4.1e-09 65.1 68 47.1
GSVIVG01025698001 Vitis vinifera HOM05D006740 ORTHO05D008571 5.3e-09 64.7 71 49.3
CiPaw.09G174800 Carya illinoinensis HOM05D006740 ORTHO05D008571 6.9e-09 64.3 49 59.2
RcHm_v2.0_Chr6g0274921 Rosa chinensis HOM05D006740 ORTHO05D008571 6.9e-09 64.3 49 55.1
Cfa009828 Carpinus fangiana HOM05D006740 ORTHO05D008571 9.1e-09 63.9 47 61.7
QL11p050841 Quercus lobata HOM05D006740 ORTHO05D008571 9.1e-09 63.9 54 55.6
QL93p2024_0074 Quercus lobata HOM05D006740 ORTHO05D008571 9.1e-09 63.9 54 55.6
Ciclev10010464m.g Citrus clementina HOM05D006740 ORTHO05D008571 1.2e-08 63.5 85 45.9
Solyc12g019290.1 Solanum lycopersicum HOM05D006740 ORTHO05D008571 1.2e-08 63.5 47 63.8
Prupe.1G532500 Prunus persica HOM05D006740 ORTHO05D008571 2.0e-08 62.8 50 56.0
CAN.G771.41 Capsicum annuum HOM05D006740 ORTHO05D008571 2.6e-08 62.4 51 58.8
Psat1g151920 Pisum sativum HOM05D006740 ORTHO05D008571 2.6e-08 62.4 51 56.9
TWI74G0655 Tripterygium wilfordii HOM05D006740 ORTHO05D008571 2.6e-08 62.4 53 54.7
Eucgr.F02345 Eucalyptus grandis HOM05D006740 ORTHO05D008571 3.4e-08 62.0 69 47.8
Sopen12g009600 Solanum pennellii HOM05D006740 ORTHO05D008571 4.5e-08 61.6 45 64.4
Lj4g0004954 Lotus japonicus HOM05D006740 ORTHO05D008571 7.7e-08 60.8 52 57.7
Peaxi162Scf00046g00155 Petunia axillaris HOM05D006740 ORTHO05D008571 1.7e-07 59.7 44 63.6
Lsat_1_v5_gn_6_30921 Lactuca sativa HOM05D006740 ORTHO05D008571 2.2e-07 59.3 55 50.9
MD08G1198800 Malus domestica HOM05D006740 ORTHO05D008571 2.9e-07 58.9 42 61.9
PGSC0003DMG400020392 Solanum tuberosum HOM05D006740 ORTHO05D008571 5.0e-07 58.2 43 65.1
MD15G1385700 Malus domestica HOM05D006740 ORTHO05D008571 6.5e-07 57.8 42 59.5
Potri.010G077400 Populus trichocarpa HOM05D006740 ORTHO05D008571 6.5e-07 57.8 55 52.7
THA.LOC104817005 Tarenaya hassleriana HOM05D000104 ORTHO05D009920 1.1e-06 57.0 110 28.2
Ca_02412_v3 Cicer arietinum L. HOM05D006740 ORTHO05D008571 1.4e-06 56.6 44 61.4
Sabra10G0031400 Salix brachista HOM05D006740 ORTHO05D008571 1.4e-06 56.6 54 53.7
CARHR000280 Cardamine hirsuta HOM05D000104 ORTHO05D009920 1.9e-06 56.2 107 28.0
ECA233G1366 Erigeron canadensis HOM05D006740 ORTHO05D008571 1.9e-06 56.2 51 51.0
SGA_v2.0_scaffold7G03966 Striga asiatica HOM05D006740 ORTHO05D008571 2.5e-06 55.8 64 45.3
Lj2C113T11 Lonicera japonica HOM05D006740 ORTHO05D008571 3.2e-06 55.5 43 65.1
Thecc.04G147700 Theobroma cacao HOM05D006740 ORTHO05D008571 4.2e-06 55.1 40 70.0
CANSAT64G0911 Cannabis sativa HOM05D006740 ORTHO05D008571 5.5e-06 54.7 40 57.5
Nitab4.5_0003215g0040 Nicotiana tabacum HOM05D006740 ORTHO05D008571 9.4e-06 53.9 42 57.1
Nitab4.5_0026741g0010 Nicotiana tabacum HOM05D006740 ORTHO05D008571 9.4e-06 53.9 41 58.5


User provided reference genes

Program Settings