Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 3506.5 1795 100.0
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2721.8 1806 79.1
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 2412.1 1821 71.3
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 2350.9 1820 69.6
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 2317.3 1828 69.0
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 2311.2 1825 67.5
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 2305.4 1815 68.1
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 2300.8 1828 68.3
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 2295.8 1835 67.8
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 2284.6 1869 66.5
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 2275.4 1838 67.1
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 2274.6 1811 67.1
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 2273.8 1823 68.1
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 2268.4 1846 67.0
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 2268.4 1808 67.8
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 2267.3 1828 66.4
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2266.1 1822 67.6
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2252.2 1826 67.3
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2251.1 1826 67.0
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2249.9 1834 66.7
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 2249.6 1817 67.4
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 2247.6 1821 66.9
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 2247.6 1796 66.7
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 2237.2 1816 66.5
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 2234.1 1826 66.5
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 2230.7 1833 66.8
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 2230.3 1825 66.6
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2228.8 1859 65.8
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2227.6 1830 67.0
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2219.5 1824 66.5
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2215.7 1827 66.1
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2211.8 1836 65.6
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2208.7 1823 66.5
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 2207.9 1887 64.7
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2205.6 1825 65.0
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2202.2 1785 67.5
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 2199.5 1816 65.6
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 2197.9 1816 65.6
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2196.0 1813 66.0
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 2192.5 1892 63.7
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2190.2 1822 64.4
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2189.5 1823 64.8
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2187.5 1823 64.9
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2187.1 1830 64.5
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2171.4 1823 64.1
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 2166.0 1816 64.6
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 2165.2 1832 65.4
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2161.0 1823 64.2
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 2157.9 1814 64.1
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 2156.3 1824 64.3
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 2153.3 1819 64.3
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2149.8 1828 63.8
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2146.7 1835 65.0
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2142.1 1831 63.7
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2135.9 1811 64.1
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 2133.6 1809 63.9
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2132.8 1837 64.6
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 2128.6 1808 63.9
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2126.3 1836 65.0
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 2124.4 1832 63.8
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 2123.2 1833 64.5
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 2120.9 1711 66.2
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 2111.6 1816 62.9
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2105.1 1819 63.3
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2105.1 1819 63.3
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2095.9 1804 63.6
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2093.9 1816 63.1
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 2090.5 1818 62.8
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2088.2 1801 63.2
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2082.4 1809 62.9
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2068.1 1815 62.3
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2067.0 1814 62.7
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 2062.7 1828 62.0
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 2036.2 1817 61.3
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2028.4 1823 61.6
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 1999.6 1812 61.2
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 1981.8 1832 60.1
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 1978.8 1818 60.9
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 1974.1 1819 61.0
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1967.6 1744 62.3
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 1966.8 1818 60.7
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 1964.9 1834 60.1
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 1960.7 1821 60.3
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 1959.9 1820 59.8
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 1938.3 1815 60.1
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 1936.4 1818 59.6
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 1912.1 1798 58.6
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 1864.7 1817 58.0
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 1859.0 1873 55.9
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1849.7 1809 57.8
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1843.9 1811 57.9
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 1842.4 1811 57.9
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 1835.8 1830 57.0
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1787.7 1826 54.9
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 0.0e+00 1719.9 1816 53.6
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 0.0e+00 1679.5 1824 52.6
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1638.6 1778 53.4
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1614.7 1465 61.0
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 0.0e+00 1583.9 1685 54.1
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1558.5 1368 62.3
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1478.4 1209 66.5
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1439.5 1340 59.5
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1437.6 1331 60.0
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 0.0e+00 1431.4 1348 59.1
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 0.0e+00 1424.8 1284 60.7
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1414.8 1563 54.8
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 0.0e+00 1366.7 1783 48.2
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 0.0e+00 1330.9 1978 42.9
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1251.5 1186 58.4
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 0.0e+00 1186.8 994 64.4
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 0.0e+00 1185.2 1832 41.6
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 0.0e+00 1161.0 1163 58.2
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 0.0e+00 1160.6 1369 51.0
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1156.0 1926 39.1
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 0.0e+00 1141.3 1924 39.6
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1130.2 1992 38.2
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 3.1e-305 1052.7 1140 53.4
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 1.4e-265 921.0 871 60.0
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 4.4e-251 872.8 1360 41.7
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 7.5e-235 818.9 1468 38.1
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 4.0e-212 743.4 623 62.0
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 6.9e-204 716.1 471 78.1
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 2.1e-184 651.4 524 66.2
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 6.5e-178 629.8 463 71.3
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 1.8e-172 611.7 612 57.4
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 6.9e-164 583.2 613 54.3
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 4.5e-163 580.5 492 66.9
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 5.7e-158 563.5 381 76.9
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 2.5e-153 548.1 354 78.8
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 2.1e-152 545.0 422 65.4
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 1.5e-150 538.9 333 83.5
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 1.3e-149 535.8 359 74.9
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 2.8e-133 481.5 380 67.1
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 2.0e-131 475.3 553 49.5
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 3.6e-120 438.0 466 55.4
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 2.8e-112 411.8 324 62.7
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 8.6e-106 390.2 258 78.3
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 6.8e-103 380.6 265 77.7
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 4.7e-96 357.8 404 53.2
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 5.8e-86 324.3 422 50.5
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 4.6e-83 314.7 299 61.9
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 7.9e-83 313.9 300 61.7
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 4.8e-80 304.7 304 60.5
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 5.9e-46 191.4 123 81.3
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 2.1e-43 183.0 131 67.2
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 1.7e-24 120.2 114 54.4
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 1.2e-19 104.0 71 76.1
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 2.7e-19 102.8 70 77.1
DCAR_027576 Daucus carota HOM05D004252 ORTHO05D005101 2.3e-18 99.8 95 63.2
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 6.8e-18 98.2 70 71.4
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 9.8e-17 94.4 66 68.2
PRCOL_00001722 Prasinoderma coloniale HOM05D000936 ORTHO05D005107 3.5e-14 85.9 568 21.8
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 4.5e-14 85.5 70 64.3
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 9.5e-12 77.8 204 27.0
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 3.6e-11 75.9 39 76.9
Psat3g129120 Pisum sativum HOM05D004252 ORTHO05D005101 3.6e-11 75.9 78 51.3
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 6.1e-11 75.1 34 88.2
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 6.1e-11 75.1 34 88.2
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 6.1e-11 75.1 34 88.2
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 6.1e-11 75.1 34 88.2
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 6.1e-11 75.1 34 88.2
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 5.2e-10 72.0 78 48.7
Pp3c15_3250 Physcomitrium patens HOM05D004252 ORTHO05D005101 8.3e-08 64.7 184 31.5
PGR031G0210 Punica granatum HOM05D004252 ORTHO05D005101 1.1e-07 64.3 37 83.8


User provided reference genes

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