Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_014666 Daucus carota HOM05D003999 ORTHO05D005219 9.4e-276 953.0 506 100.0
DCAR_018034 Daucus carota HOM05D003999 ORTHO05D005219 3.2e-122 443.0 467 53.5
Dinv41175 Davidia involucrata HOM05D003999 ORTHO05D005219 3.4e-108 396.4 394 54.6
Actinidia38494 Actinidia chinensis HOM05D003999 ORTHO05D005219 2.4e-98 363.6 424 48.1
Actinidia29951 Actinidia chinensis HOM05D003999 ORTHO05D005219 3.5e-97 359.8 384 50.5
Cfa013453 Carpinus fangiana HOM05D003999 ORTHO05D005219 5.6e-95 352.4 472 44.1
Rhsim03G0266100 Rhododendron simsii HOM05D003999 ORTHO05D005219 4.8e-94 349.4 345 52.5
Hma1.2p1_1326F.1_g275830 Hydrangea macrophylla HOM05D003999 ORTHO05D005219 8.1e-94 348.6 390 50.8
vmacro05997 Vaccinium macrocarpon HOM05D003999 ORTHO05D005219 1.2e-92 344.7 347 52.2
Cc06_g20850 Coffea canephora HOM05D003999 ORTHO05D005219 1.2e-89 334.7 395 47.6
DCAR_020148 Daucus carota HOM05D003999 ORTHO05D005219 4.6e-89 332.8 392 46.7
CiPaw.07G197100 Carya illinoinensis HOM05D003999 ORTHO05D005219 6.0e-89 332.4 400 47.0
Sc08g0004740 Simmondsia chinensis HOM05D003999 ORTHO05D005219 2.3e-88 330.5 334 51.2
Atru.chr7.755 Acer truncatum HOM05D003999 ORTHO05D005219 8.7e-88 328.6 396 46.2
Atru.chr7.776 Acer truncatum HOM05D003999 ORTHO05D005219 8.7e-88 328.6 396 46.2
Duzib106G1697 Durio zibethinus HOM05D003999 ORTHO05D005219 2.5e-87 327.0 326 53.1
Peaxi162Scf00670g00347 Petunia axillaris HOM05D003999 ORTHO05D005219 2.5e-87 327.0 328 51.2
Thecc.10G174600 Theobroma cacao HOM05D003999 ORTHO05D005219 3.3e-87 326.6 328 51.5
Potri.018G142300 Populus trichocarpa HOM05D003999 ORTHO05D005219 5.6e-87 325.9 527 38.7
Duzib114G0910 Durio zibethinus HOM05D003999 ORTHO05D005219 9.6e-87 325.1 328 52.7
Migut.L01882 Erythranthe guttata HOM05D003999 ORTHO05D005219 2.8e-86 323.6 325 49.8
Prupe.1G075400 Prunus persica HOM05D003999 ORTHO05D005219 1.4e-85 321.2 390 44.9
Manes.06G019800 Manihot esculenta HOM05D003999 ORTHO05D005219 4.0e-85 319.7 322 52.2
MSTRG.26544 Avicennia marina HOM05D003999 ORTHO05D005219 1.2e-84 318.2 417 44.1
Ciclev10010423m.g Citrus clementina HOM05D003999 ORTHO05D005219 1.5e-84 317.8 325 49.8
Potri.006G075400 Populus trichocarpa HOM05D003999 ORTHO05D005219 9.9e-84 315.1 401 44.9
Gohir.A06G176100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 1.3e-83 314.7 327 50.8
Gohir.D06G185700 Gossypium hirsutum HOM05D003999 ORTHO05D005219 2.9e-83 313.5 324 50.6
Gorai.010G217300 Gossypium raimondii HOM05D003999 ORTHO05D005219 2.9e-83 313.5 324 51.2
Gohir.D10G188000 Gossypium hirsutum HOM05D003999 ORTHO05D005219 1.9e-82 310.8 327 50.2
MD13G1241700 Malus domestica HOM05D003999 ORTHO05D005219 2.4e-82 310.5 341 49.0
RcHm_v2.0_Chr7g0219501 Rosa chinensis HOM05D003999 ORTHO05D005219 4.2e-82 309.7 384 45.1
Sed0015737 Sechium edule HOM05D003999 ORTHO05D005219 7.1e-82 308.9 383 44.9
Sed0001699 Sechium edule HOM05D003999 ORTHO05D005219 1.6e-81 307.8 319 50.8
Nn8g40781 Nelumbo nucifera HOM05D003999 ORTHO05D005219 3.5e-81 306.6 320 49.7
SGA_v2.0_scaffold231G43410 Striga asiatica HOM05D003999 ORTHO05D005219 1.8e-80 304.3 318 49.1
ECA240G0372 Erigeron canadensis HOM05D003999 ORTHO05D005219 5.1e-80 302.8 331 48.0
MELO3C017428.2 Cucumis melo HOM05D003999 ORTHO05D005219 2.5e-79 300.4 359 46.0
Gorai.011G210800 Gossypium raimondii HOM05D003999 ORTHO05D005219 2.5e-79 300.4 320 49.4
Lj1g0014223 Lotus japonicus HOM05D003999 ORTHO05D005219 4.3e-79 299.7 314 48.1
Sabra06G0056300 Salix brachista HOM05D003999 ORTHO05D005219 7.4e-79 298.9 421 43.2
COL.COLO4_08503 Corchorus olitorius HOM05D003999 ORTHO05D005219 1.6e-78 297.7 346 48.0
CsaV3_1G031880 Cucumis sativus L. HOM05D003999 ORTHO05D005219 1.6e-78 297.7 360 45.0
Sabra18G0116200 Salix brachista HOM05D003999 ORTHO05D005219 1.6e-78 297.7 408 42.6
TAR625G1146 Trochodendron aralioides HOM05D003999 ORTHO05D005219 4.8e-78 296.2 356 46.1
AUR62027455 Chenopodium quinoa HOM05D003999 ORTHO05D005219 1.1e-77 295.0 332 48.2
Hund06701 Selenicereus undatus HOM05D003999 ORTHO05D005219 1.8e-77 294.3 331 48.0
TAR626G1281 Trochodendron aralioides HOM05D003999 ORTHO05D005219 1.8e-77 294.3 309 49.8
Ca_15280_v3 Cicer arietinum L. HOM05D003999 ORTHO05D005219 5.3e-77 292.7 328 46.0
CAN.G79.26 Capsicum annuum HOM05D003999 ORTHO05D005219 6.9e-77 292.4 337 48.1
EL10Ac8g19270 Beta vulgaris HOM05D003999 ORTHO05D005219 9.0e-77 292.0 325 48.0
Sopen02g019140 Solanum pennellii HOM05D003999 ORTHO05D005219 1.2e-76 291.6 330 48.2
Glyma.04G001900 Glycine max HOM05D003999 ORTHO05D005219 2.6e-76 290.4 335 46.6
AUR62031249 Chenopodium quinoa HOM05D003999 ORTHO05D005219 5.8e-76 289.3 331 46.2
Gohir.A10G181100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 7.6e-76 288.9 329 48.0
FAN04G0885 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.3e-75 288.1 512 35.9
Lalb_Chr11g0061221 Lupinus albus HOM05D003999 ORTHO05D005219 2.9e-75 287.0 405 41.7
Glyma.06G001400 Glycine max HOM05D003999 ORTHO05D005219 6.5e-75 285.8 325 46.5
TWI34G1954 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 8.4e-75 285.4 387 42.4
FAN18G4269 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.1e-74 285.0 376 43.1
arahy.Tifrunner.gnm1.ann1.K74ZDU Arachis hypogaea HOM05D003999 ORTHO05D005219 1.4e-74 284.6 337 45.1
FAN13G0316 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.4e-74 284.6 384 42.4
Eucgr.C02221 Eucalyptus grandis HOM05D003999 ORTHO05D005219 1.2e-73 281.6 364 43.1
TWI63G1413 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 1.2e-73 281.6 394 41.9
Phvul.009G117100 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 6.0e-73 279.3 336 44.0
HanXRQChr09g0244721 Helianthus annuus HOM05D003999 ORTHO05D005219 1.8e-72 277.7 298 49.0
MD16G1248600 Malus domestica HOM05D003999 ORTHO05D005219 2.3e-72 277.3 389 43.2
Nitab4.5_0001225g0140 Nicotiana tabacum HOM05D003999 ORTHO05D005219 5.1e-72 276.2 304 48.0
VMungo1309G0585 Vigna mungo HOM05D003999 ORTHO05D005219 8.7e-72 275.4 332 44.0
CSS0024594 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 1.1e-71 275.0 348 46.0
Nitab4.5_0001583g0100 Nicotiana tabacum HOM05D003999 ORTHO05D005219 1.9e-71 274.2 308 48.7
TPR.G6349 Trifolium pratense HOM05D003999 ORTHO05D005219 4.3e-71 273.1 297 47.5
Medtr3g100350 Medicago truncatula HOM05D003999 ORTHO05D005219 1.3e-70 271.6 308 46.8
Aqoxy7G02806 Aquilegia oxysepala HOM05D003999 ORTHO05D005219 2.1e-70 270.8 322 45.0
TAR383G0399 Trochodendron aralioides HOM05D003999 ORTHO05D005219 2.1e-70 270.8 313 47.3
arahy.Tifrunner.gnm1.ann1.M9AABA Arachis hypogaea HOM05D003999 ORTHO05D005219 4.8e-70 269.6 346 44.5
PSO170G0656 Papaver somniferum HOM05D003999 ORTHO05D005219 1.8e-69 267.7 310 46.1
Haze_22020 Corylus avellana HOM05D003999 ORTHO05D005219 1.2e-68 265.0 420 40.5
Solyc02g069980.4 Solanum lycopersicum HOM05D003999 ORTHO05D005219 1.5e-68 264.6 306 47.7
Psat5g048320 Pisum sativum HOM05D003999 ORTHO05D005219 2.0e-68 264.2 317 44.8
Lsat_1_v5_gn_7_51121 Lactuca sativa HOM05D003999 ORTHO05D005219 1.0e-67 261.9 306 48.7
CiPaw.08G032500 Carya illinoinensis HOM05D003999 ORTHO05D005219 6.5e-67 259.2 311 45.7
Migut.J00798 Erythranthe guttata HOM05D003999 ORTHO05D005219 1.2e-65 255.0 311 46.3
unitig_8.g4939 Utricularia gibba HOM05D003999 ORTHO05D005219 1.2e-65 255.0 313 44.4
MBI16_g05835_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 3.6e-65 253.4 309 43.7
FvH4_5g27730 Fragaria vesca HOM05D003999 ORTHO05D005219 2.3e-64 250.8 399 38.8
FAN08G2100 Fragaria x ananassa HOM05D003999 ORTHO05D005219 6.7e-64 249.2 399 38.6
unitig_578.g16064 Utricularia gibba HOM05D003999 ORTHO05D005219 1.5e-63 248.1 317 41.0
THA.LOC104814650 Tarenaya hassleriana HOM05D003999 ORTHO05D005219 7.4e-63 245.7 315 43.2
Cc00_g03720 Coffea canephora HOM05D003999 ORTHO05D005219 2.8e-62 243.8 345 42.9
MBI13_g34042_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 1.8e-61 241.1 345 40.9
Ciclev10008331m.g Citrus clementina HOM05D003999 ORTHO05D005219 1.0e-59 235.3 319 40.8
Haze_18974 Corylus avellana HOM05D003999 ORTHO05D005219 6.5e-59 232.6 390 37.2
Thecc.09G004800 Theobroma cacao HOM05D003999 ORTHO05D005219 1.9e-58 231.1 278 44.2
Zm00001eb002000 Zea mays HOM05D003999 ORTHO05D005219 1.9e-58 231.1 301 42.2
Os04g0425100 Oryza sativa ssp. japonica HOM05D003999 ORTHO05D005219 7.9e-57 225.7 283 44.2
CSS0017119 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 1.8e-56 224.6 255 46.7
Cfa020676 Carpinus fangiana HOM05D003999 ORTHO05D005219 2.3e-56 224.2 402 36.8
ATR0681G357 Amborella trichopoda HOM05D003999 ORTHO05D005219 5.1e-56 223.0 336 39.3
Haze_18980 Corylus avellana HOM05D003999 ORTHO05D005219 2.0e-55 221.1 410 35.9
Potri.006G277400 Populus trichocarpa HOM05D003999 ORTHO05D005219 5.7e-55 219.5 307 39.1
Thhalv10022602m.g Eutrema salsugineum HOM05D003999 ORTHO05D005219 8.2e-54 215.7 308 39.9
SalBow5G4070 Salvia bowleyana HOM05D003999 ORTHO05D005219 1.8e-53 214.5 378 36.0
Actinidia27131 Actinidia chinensis HOM05D003999 ORTHO05D005219 3.1e-53 213.8 276 44.9
BolC9t54356H Brassica oleracea HOM05D003999 ORTHO05D005219 3.1e-53 213.8 229 47.6
C09p14530 Brassica napus HOM05D003999 ORTHO05D005219 5.3e-53 213.0 221 48.0
BcaC04g22860 Brassica carinata HOM05D003999 ORTHO05D005219 9.1e-53 212.2 229 47.2
CDE06G2299 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 9.1e-53 212.2 221 48.0
Zm00001eb274650 Zea mays HOM05D003999 ORTHO05D005219 1.7e-51 208.0 312 40.1
CDE02G3353 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 2.9e-51 207.2 226 45.6
Sp3g32620 Schrenkiella parvula HOM05D003999 ORTHO05D005219 3.8e-51 206.8 226 48.2
BcaB07g31614 Brassica carinata HOM05D003999 ORTHO05D005219 5.0e-51 206.5 221 47.5
Carub.0003s3349 Capsella rubella HOM05D003999 ORTHO05D005219 4.2e-50 203.4 303 40.3
AT2G19260 Arabidopsis thaliana HOM05D003999 ORTHO05D005219 9.4e-50 202.2 303 39.9
A07p01530 Brassica napus HOM05D003999 ORTHO05D005219 1.6e-49 201.4 222 45.5
BraA07t27954Z Brassica rapa HOM05D003999 ORTHO05D005219 1.6e-49 201.4 222 45.5
AL3G49030 Arabidopsis lyrata HOM05D003999 ORTHO05D005219 6.7e-48 196.1 303 39.9
GSVIVG01010859001 Vitis vinifera HOM05D003999 ORTHO05D005219 1.5e-47 194.9 150 58.0
C07p03110 Brassica napus HOM05D003999 ORTHO05D005219 2.6e-47 194.1 228 43.9
BolC7t40703H Brassica oleracea HOM05D003999 ORTHO05D005219 2.6e-47 194.1 228 43.9
ATR0626G364 Amborella trichopoda HOM05D003999 ORTHO05D005219 3.3e-47 193.7 228 42.1
BcaB03g16715 Brassica carinata HOM05D003999 ORTHO05D005219 7.4e-47 192.6 228 43.9
BcaC06g36543 Brassica carinata HOM05D003999 ORTHO05D005219 7.4e-47 192.6 308 37.3
PGSC0003DMG400021118 Solanum tuberosum HOM05D003999 ORTHO05D005219 1.1e-45 188.7 310 38.4
CiPaw.15G150400 Carya illinoinensis HOM05D003999 ORTHO05D005219 3.1e-45 187.2 276 39.5
Atru.chr7.2670 Acer truncatum HOM05D003999 ORTHO05D005219 3.5e-44 183.7 293 39.9
CARHR109720 Cardamine hirsuta HOM05D003999 ORTHO05D005219 1.3e-43 181.8 201 47.3
Oeu064556.1 Olea europaea HOM05D003999 ORTHO05D005219 3.2e-42 177.2 273 38.8
Sabra06G0215100 Salix brachista HOM05D003999 ORTHO05D005219 5.5e-42 176.4 342 33.3
ECA234G1030 Erigeron canadensis HOM05D003999 ORTHO05D005219 6.1e-41 172.9 173 50.9
Aa31LG8G16300 Aethionema arabicum HOM05D003999 ORTHO05D005219 8.0e-41 172.6 263 37.3
MSTRG.10442 Avicennia marina HOM05D003999 ORTHO05D005219 1.4e-37 161.8 106 66.0
ClCG06G013610 Citrullus lanatus HOM05D003999 ORTHO05D005219 9.4e-34 149.1 104 61.5
SMO117G0282 Selaginella moellendorffii HOM05D003999 ORTHO05D005219 5.7e-31 139.8 249 34.9
SEGI_05476 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 6.3e-30 136.3 264 31.8
SEGI_29375 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 1.2e-28 132.1 277 32.1
HPP92_010790 Vanilla planifolia HOM05D003999 ORTHO05D005219 3.8e-27 127.1 209 37.8
Mapoly0046s0104 Marchantia polymorpha HOM05D003999 ORTHO05D005219 2.5e-26 124.4 257 32.3
MSTRG.10441 Avicennia marina HOM05D003999 ORTHO05D005219 6.8e-24 116.3 215 37.2
MBI16_g10833_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 3.4e-23 114.0 203 37.9
GSVIVG01035550001 Vitis vinifera HOM05D003999 ORTHO05D005219 1.2e-20 105.5 79 53.2
Phvul.007G142700 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 2.0e-20 104.8 181 34.3
RcHm_v2.0_Chr7g0177591 Rosa chinensis HOM05D003999 ORTHO05D005219 3.5e-20 104.0 121 42.1
FvH4_5g18011 Fragaria vesca HOM05D003999 ORTHO05D005219 3.8e-19 100.5 117 41.9
FAN18G0538 Fragaria x ananassa HOM05D003999 ORTHO05D005219 5.0e-19 100.1 117 41.9
Prupe.5G240400 Prunus persica HOM05D003999 ORTHO05D005219 4.3e-18 97.1 129 44.2
FAN13G0118 Fragaria x ananassa HOM05D003999 ORTHO05D005219 5.6e-18 96.7 115 43.5
PGR044G2313 Punica granatum HOM05D003999 ORTHO05D005219 7.3e-18 96.3 157 40.1
MD06G1235600 Malus domestica HOM05D003999 ORTHO05D005219 2.8e-17 94.4 110 45.5
Manes.03G002401 Manihot esculenta HOM05D003999 ORTHO05D005219 2.3e-16 91.3 127 39.4
SEGI_17596 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 2.0e-15 88.2 139 34.5
Cfa020674 Carpinus fangiana HOM05D003999 ORTHO05D005219 3.4e-15 87.4 61 60.7
BraA09t36876Z Brassica rapa HOM05D003999 ORTHO05D005219 3.6e-09 67.4 59 47.5
A09p12320 Brassica napus HOM05D003999 ORTHO05D005219 1.8e-08 65.1 52 51.9
Carub.0003s3352 Capsella rubella HOM05D003999 ORTHO05D005219 2.6e-07 61.2 89 38.2
Oeu047167.1 Olea europaea HOM05D004258 ORTHO05D005163 2.9e-06 57.8 51 39.2
Sed0013494 Sechium edule HOM05D004258 ORTHO05D005163 3.7e-06 57.4 56 41.1
QL09p007788 Quercus lobata HOM05D002415 ORTHO05D002522 6.4e-06 56.6 52 36.5
HanXRQChr04g0100461 Helianthus annuus HOM05D002415 ORTHO05D002522 8.3e-06 56.2 53 37.7
Lj3A899T68 Lonicera japonica HOM05D002415 ORTHO05D002522 8.3e-06 56.2 54 40.7


User provided reference genes

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