Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_014370 Daucus carota HOM05D000042 ORTHO05D000980 6.3e-58 227.3 117 100.0
Nitab4.5_0000418g0050 Nicotiana tabacum HOM05D000042 ORTHO05D000980 8.0e-21 104.0 114 51.8
Nitab4.5_0005166g0020 Nicotiana tabacum HOM05D000042 ORTHO05D000980 1.4e-20 103.2 114 50.9
Ca_12647_v3 Cicer arietinum L. HOM05D000042 ORTHO05D000980 5.2e-20 101.3 113 47.8
Sed0027083 Sechium edule HOM05D000042 ORTHO05D000980 8.9e-20 100.5 114 49.1
ClCG11G016000 Citrullus lanatus HOM05D000042 ORTHO05D000980 1.2e-19 100.1 113 49.6
Manes.02G168500 Manihot esculenta HOM05D000042 ORTHO05D000980 2.0e-19 99.4 113 48.7
CAN.G531.15 Capsicum annuum HOM05D000042 ORTHO05D000980 2.6e-19 99.0 115 50.4
GSVIVG01008806001 Vitis vinifera HOM05D000042 ORTHO05D000980 3.4e-19 98.6 114 51.8
Hma1.2p1_1121F.1_g259270 Hydrangea macrophylla HOM05D000042 ORTHO05D000980 4.4e-19 98.2 115 47.0
Manes.18G082400 Manihot esculenta HOM05D000042 ORTHO05D000980 7.5e-19 97.4 113 47.8
CsaV3_4G028010 Cucumis sativus L. HOM05D000042 ORTHO05D000980 1.3e-18 96.7 113 48.7
Lj1g0009507 Lotus japonicus HOM05D000042 ORTHO05D000980 1.7e-18 96.3 113 48.7
Actinidia21276 Actinidia chinensis HOM05D000042 ORTHO05D000980 2.9e-18 95.5 113 50.4
MELO3C010515.2 Cucumis melo HOM05D000042 ORTHO05D000980 3.7e-18 95.1 109 49.5
Ciclev10002422m.g Citrus clementina HOM05D000042 ORTHO05D000980 4.9e-18 94.7 122 46.7
Phvul.001G068200 Phaseolus vulgaris HOM05D000042 ORTHO05D000980 6.4e-18 94.4 113 46.0
TAR625G0222 Trochodendron aralioides HOM05D000042 ORTHO05D000980 1.4e-17 93.2 113 47.8
VMungo0647G2314 Vigna mungo HOM05D000042 ORTHO05D000980 1.4e-17 93.2 113 45.1
Glyma.14G155100 Glycine max HOM05D000042 ORTHO05D000980 1.9e-17 92.8 113 45.1
MBI18_g09769_MAGBIO Magnolia biondii HOM05D000042 ORTHO05D000980 2.4e-17 92.4 110 47.3
MSTRG.25848 Avicennia marina HOM05D000042 ORTHO05D000980 3.2e-17 92.0 113 46.9
CSS0013221 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000980 4.1e-17 91.7 113 49.6
Glyma.13G034100 Glycine max HOM05D000042 ORTHO05D000980 4.1e-17 91.7 113 44.2
Solyc06g059970.4 Solanum lycopersicum HOM05D000042 ORTHO05D000980 5.4e-17 91.3 116 47.4
Sopen06g020070 Solanum pennellii HOM05D000042 ORTHO05D000980 5.4e-17 91.3 116 47.4
Cpa.g.sc26.316 Carica papaya HOM05D000042 ORTHO05D000980 7.0e-17 90.9 113 45.1
CSS0022940 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000980 9.2e-17 90.5 117 47.0
CiPaw.15G031300 Carya illinoinensis HOM05D000042 ORTHO05D000980 9.2e-17 90.5 114 47.4
Peaxi162Scf00591g00074 Petunia axillaris HOM05D000042 ORTHO05D000980 9.2e-17 90.5 108 50.9
Actinidia15212 Actinidia chinensis HOM05D000042 ORTHO05D000980 2.1e-16 89.4 113 46.9
Nn1g08955 Nelumbo nucifera HOM05D000042 ORTHO05D000980 2.7e-16 89.0 109 47.7
Cfa018130 Carpinus fangiana HOM05D000042 ORTHO05D000980 7.8e-16 87.4 113 46.9
Haze_17996 Corylus avellana HOM05D000042 ORTHO05D000980 7.8e-16 87.4 113 46.0
Potri.005G182200 Populus trichocarpa HOM05D000042 ORTHO05D000980 7.8e-16 87.4 113 44.2
Potri.002G079000 Populus trichocarpa HOM05D000042 ORTHO05D000980 1.3e-15 86.7 113 44.2
Aqoxy6G00308 Aquilegia oxysepala HOM05D000042 ORTHO05D000980 2.3e-15 85.9 109 49.5
Solyc08g067230.4 Solanum lycopersicum HOM05D000042 ORTHO05D000980 3.0e-15 85.5 113 46.9
DCAR_014369 Daucus carota HOM05D000042 ORTHO05D000980 3.9e-15 85.1 113 46.0
ECA236G4655 Erigeron canadensis HOM05D000042 ORTHO05D000980 3.9e-15 85.1 113 46.0
HanXRQChr02g0045511 Helianthus annuus HOM05D000042 ORTHO05D000980 3.9e-15 85.1 113 47.8
HanXRQChr12g0358781 Helianthus annuus HOM05D000042 ORTHO05D000980 5.1e-15 84.7 113 46.9
Zm00001eb349070 Zea mays HOM05D000042 ORTHO05D000980 5.1e-15 84.7 110 43.6
Migut.A00326 Erythranthe guttata HOM05D000042 ORTHO05D000980 6.6e-15 84.3 114 45.6
Sopen08g021160 Solanum pennellii HOM05D000042 ORTHO05D000980 6.6e-15 84.3 113 46.0
Hma1.2p1_0880F.1_g231800 Hydrangea macrophylla HOM05D000042 ORTHO05D000980 8.6e-15 84.0 116 47.4
Os01g0883100 Oryza sativa ssp. japonica HOM05D000042 ORTHO05D000980 8.6e-15 84.0 109 42.2
SalBow4G1774 Salvia bowleyana HOM05D000042 ORTHO05D000980 8.6e-15 84.0 114 44.7
Prupe.1G489400 Prunus persica HOM05D000042 ORTHO05D000980 1.5e-14 83.2 113 43.4
Zm00001eb349060 Zea mays HOM05D000042 ORTHO05D000980 1.9e-14 82.8 109 40.4
Nitab4.5_0004346g0030 Nicotiana tabacum HOM05D000042 ORTHO05D000980 2.5e-14 82.4 113 43.4
Sc26g0002920 Simmondsia chinensis HOM05D000042 ORTHO05D000980 2.5e-14 82.4 113 42.5
CSS0008613 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000980 3.3e-14 82.0 113 47.8
Thecc.08G133200 Theobroma cacao HOM05D000042 ORTHO05D000980 3.3e-14 82.0 113 42.5
Nitab4.5_0000508g0030 Nicotiana tabacum HOM05D000042 ORTHO05D000980 5.6e-14 81.3 116 42.2
Cc10_g13750 Coffea canephora HOM05D000042 ORTHO05D000980 7.3e-14 80.9 114 43.0
Gohir.D02G078000 Gossypium hirsutum HOM05D000042 ORTHO05D000980 7.3e-14 80.9 113 42.5
Gorai.005G087600 Gossypium raimondii HOM05D000042 ORTHO05D000980 7.3e-14 80.9 113 42.5
Os05g0423400 Oryza sativa ssp. japonica HOM05D000042 ORTHO05D000980 7.3e-14 80.9 112 37.5
QL09p032472 Quercus lobata HOM05D000042 ORTHO05D000980 7.3e-14 80.9 113 46.0
SHI09220 Sapria himalayana HOM05D000042 ORTHO05D000980 7.3e-14 80.9 113 43.4
CAN.G348.10 Capsicum annuum HOM05D000042 ORTHO05D000980 9.5e-14 80.5 116 45.7
Gohir.A02G070800 Gossypium hirsutum HOM05D000042 ORTHO05D000980 9.5e-14 80.5 113 42.5
Zm00001eb145660 Zea mays HOM05D000042 ORTHO05D000980 9.5e-14 80.5 109 42.2
Ciclev10002471m.g Citrus clementina HOM05D000042 ORTHO05D000980 1.6e-13 79.7 113 43.4
Cfa018426 Carpinus fangiana HOM05D000042 ORTHO05D000980 2.1e-13 79.3 114 42.1
THA.LOC104808253 Tarenaya hassleriana HOM05D000042 ORTHO05D000980 2.1e-13 79.3 112 42.0
QL09p032453 Quercus lobata HOM05D000042 ORTHO05D000980 2.8e-13 79.0 113 45.1
PGSC0003DMG401007392 Solanum tuberosum HOM05D000042 ORTHO05D000980 2.8e-13 79.0 113 43.4
SGA_v2.0_scaffold147G36311 Striga asiatica HOM05D000042 ORTHO05D000980 2.8e-13 79.0 118 41.5
FvH4_2g27870 Fragaria vesca HOM05D000042 ORTHO05D000980 6.2e-13 77.8 113 41.6
FAN20G0851 Fragaria x ananassa HOM05D000042 ORTHO05D000980 6.2e-13 77.8 113 42.5
PGR044G1215 Punica granatum HOM05D000042 ORTHO05D000980 6.2e-13 77.8 114 41.2
Atru.chr13.1570 Acer truncatum HOM05D000042 ORTHO05D000980 8.1e-13 77.4 119 42.0
ECA236G2126 Erigeron canadensis HOM05D000042 ORTHO05D000980 8.1e-13 77.4 113 44.2
TWI34G0794 Tripterygium wilfordii HOM05D000042 ORTHO05D000980 8.1e-13 77.4 110 47.3
Duzib093G1499 Durio zibethinus HOM05D000042 ORTHO05D000980 3.1e-12 75.5 113 42.5
HanXRQChr02g0040221 Helianthus annuus HOM05D000042 ORTHO05D000980 5.2e-12 74.7 113 46.0
RcHm_v2.0_Chr6g0296731 Rosa chinensis HOM05D000042 ORTHO05D000980 6.8e-12 74.3 113 38.9
FAN15G0410 Fragaria x ananassa HOM05D000042 ORTHO05D000980 1.2e-11 73.6 125 38.4
Peaxi162Scf00922g00026 Petunia axillaris HOM05D000042 ORTHO05D000980 2.0e-11 72.8 131 39.7
HPP92_005663 Vanilla planifolia HOM05D000042 ORTHO05D000980 2.0e-11 72.8 101 39.6
Oeu020103.1 Olea europaea HOM05D000042 ORTHO05D000980 4.4e-11 71.6 112 39.3
arahy.Tifrunner.gnm1.ann1.NKL1UU Arachis hypogaea HOM05D000042 ORTHO05D000980 5.8e-11 71.2 68 54.4
arahy.Tifrunner.gnm1.ann1.78PTZY Arachis hypogaea HOM05D000042 ORTHO05D000980 9.9e-11 70.5 68 54.4
FAN27G1355 Fragaria x ananassa HOM05D000042 ORTHO05D000980 1.7e-10 69.7 125 36.8
Medtr3g088615 Medicago truncatula HOM05D000042 ORTHO05D000980 2.2e-10 69.3 68 51.5
ATR1145G055 Amborella trichopoda HOM05D000042 ORTHO05D000980 2.9e-10 68.9 113 37.2
Gohir.A01G190300 Gossypium hirsutum HOM05D000042 ORTHO05D000980 2.9e-10 68.9 113 38.9
Thhalv10014683m.g Eutrema salsugineum HOM05D000042 ORTHO05D000980 8.3e-10 67.4 114 36.8
Glyma.06G117600 Glycine max HOM05D000042 ORTHO05D000980 1.1e-09 67.0 68 50.0
MBI03_g31894_MAGBIO Magnolia biondii HOM05D000042 ORTHO05D000980 1.4e-09 66.6 112 39.3
MBI03_g39655_MAGBIO Magnolia biondii HOM05D000042 ORTHO05D000980 1.4e-09 66.6 112 39.3
Psat5g084680 Pisum sativum HOM05D000042 ORTHO05D000980 1.4e-09 66.6 68 48.5
THA.LOC104815100 Tarenaya hassleriana HOM05D000042 ORTHO05D000980 1.4e-09 66.6 116 37.9
BcaB05g22859 Brassica carinata HOM05D000042 ORTHO05D000980 1.9e-09 66.2 114 36.0
Phvul.009G130000 Phaseolus vulgaris HOM05D000042 ORTHO05D000980 1.9e-09 66.2 68 50.0
VMungo1309G1360 Vigna mungo HOM05D000042 ORTHO05D000980 1.9e-09 66.2 68 50.0
Lalb_Chr08g0241111 Lupinus albus HOM05D000042 ORTHO05D000980 2.4e-09 65.9 68 50.0
Sp6g24170 Schrenkiella parvula HOM05D000042 ORTHO05D000980 2.4e-09 65.9 114 35.1
Haze_17636 Corylus avellana HOM05D000042 ORTHO05D000980 5.4e-09 64.7 113 38.9
Glyma.04G245500 Glycine max HOM05D000042 ORTHO05D000980 5.4e-09 64.7 68 48.5
Lalb_Chr08g0241091 Lupinus albus HOM05D000042 ORTHO05D000980 5.4e-09 64.7 77 46.8
TPR.G28821 Trifolium pratense HOM05D000042 ORTHO05D000980 5.4e-09 64.7 68 48.5
Medtr1g029670 Medicago truncatula HOM05D000042 ORTHO05D000980 7.1e-09 64.3 74 44.6
Rhsim11G0071800 Rhododendron simsii HOM05D000042 ORTHO05D000980 7.1e-09 64.3 117 39.3
Ca_16609_v3 Cicer arietinum L. HOM05D000042 ORTHO05D000980 9.2e-09 63.9 68 45.6
TPR.G37973 Trifolium pratense HOM05D000042 ORTHO05D000980 9.2e-09 63.9 68 48.5
Carub.0006s1863 Capsella rubella HOM05D000042 ORTHO05D000980 1.2e-08 63.5 114 33.3
FvH4_2g27860 Fragaria vesca HOM05D000042 ORTHO05D000980 1.2e-08 63.5 112 40.2
PSO528G0018 Papaver somniferum HOM05D000042 ORTHO05D000980 1.6e-08 63.2 118 37.3
TAR628G0493 Trochodendron aralioides HOM05D000042 ORTHO05D000980 1.6e-08 63.2 126 39.7
PSO170G2512 Papaver somniferum HOM05D000042 ORTHO05D000980 2.1e-08 62.8 118 37.3
Aa31LG1G14390 Aethionema arabicum HOM05D000042 ORTHO05D000980 3.5e-08 62.0 114 34.2
Cfa018427 Carpinus fangiana HOM05D000042 ORTHO05D000980 3.5e-08 62.0 104 37.5
BcaC03g13745 Brassica carinata HOM05D000042 ORTHO05D000980 4.6e-08 61.6 117 36.8
CARHR192590 Cardamine hirsuta HOM05D000042 ORTHO05D000980 4.6e-08 61.6 114 34.2
FAN15G2212 Fragaria x ananassa HOM05D000042 ORTHO05D000980 4.6e-08 61.6 113 38.9
FAN24G0105 Fragaria x ananassa HOM05D000042 ORTHO05D000980 4.6e-08 61.6 113 38.9
Gorai.002G223100 Gossypium raimondii HOM05D000042 ORTHO05D000980 4.6e-08 61.6 128 35.9
Lj1g0021593 Lotus japonicus HOM05D000042 ORTHO05D000980 7.8e-08 60.8 66 45.5
AT5G20240 Arabidopsis thaliana HOM05D000042 ORTHO05D000980 1.0e-07 60.5 114 33.3
RcHm_v2.0_Chr6g0296721 Rosa chinensis HOM05D000042 ORTHO05D000980 1.0e-07 60.5 111 36.9
FAN20G2638 Fragaria x ananassa HOM05D000042 ORTHO05D000980 1.3e-07 60.1 113 38.9
BraA02t05562Z Brassica rapa HOM05D000042 ORTHO05D000980 1.7e-07 59.7 114 36.0
Lsat_1_v5_gn_1_7541 Lactuca sativa HOM05D000042 ORTHO05D000980 1.7e-07 59.7 66 54.5
CANSAT64G0749 Cannabis sativa HOM05D000042 ORTHO05D000980 2.3e-07 59.3 114 36.8
A03p09950 Brassica napus HOM05D000042 ORTHO05D000980 3.0e-07 58.9 114 35.1
C03p11520 Brassica napus HOM05D000042 ORTHO05D000980 3.0e-07 58.9 114 35.1
BolC3t13624H Brassica oleracea HOM05D000042 ORTHO05D000980 3.0e-07 58.9 114 35.1
Oeu030210.2 Olea europaea HOM05D000042 ORTHO05D000980 3.9e-07 58.5 121 35.5
A02p06120 Brassica napus HOM05D000042 ORTHO05D000980 6.6e-07 57.8 124 33.9
TPR.G30557 Trifolium pratense HOM05D000042 ORTHO05D000980 6.6e-07 57.8 97 39.2
ATR0584G184 Amborella trichopoda HOM05D000042 ORTHO05D000980 8.6e-07 57.4 113 38.9
BcaC04g19414 Brassica carinata HOM05D000042 ORTHO05D000980 1.1e-06 57.0 114 34.2
A10p19700 Brassica napus HOM05D000042 ORTHO05D000980 1.1e-06 57.0 114 34.2
C09p55960 Brassica napus HOM05D000042 ORTHO05D000980 1.1e-06 57.0 114 34.2
BolC9t58465H Brassica oleracea HOM05D000042 ORTHO05D000980 1.1e-06 57.0 114 34.2
Eucgr.E01006 Eucalyptus grandis HOM05D000042 ORTHO05D000980 1.1e-06 57.0 113 35.4
TWI60G1129 Tripterygium wilfordii HOM05D000042 ORTHO05D000980 1.5e-06 56.6 73 43.8
BolC2t07028H Brassica oleracea HOM05D000042 ORTHO05D000980 1.9e-06 56.2 133 32.3
PSO170G3931 Papaver somniferum HOM05D000042 ORTHO05D000980 1.9e-06 56.2 69 43.5
arahy.Tifrunner.gnm1.ann1.QQ4618 Arachis hypogaea HOM05D000042 ORTHO05D000980 2.5e-06 55.8 63 49.2
CANSAT64G2469 Cannabis sativa HOM05D000042 ORTHO05D000980 5.6e-06 54.7 114 36.8
PSO528G0247 Papaver somniferum HOM05D000042 ORTHO05D000980 9.5e-06 53.9 67 43.3


User provided reference genes

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