Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 5.3e-299 1030.4 578 100.0
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 1.9e-163 580.1 507 62.3
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 1.9e-147 526.9 525 55.4
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 3.6e-146 522.7 517 55.1
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 4.0e-145 519.2 522 54.8
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 2.0e-144 516.9 529 54.1
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 1.3e-143 514.2 535 54.0
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 6.3e-143 511.9 511 54.8
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 3.1e-142 509.6 515 54.6
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 5.4e-142 508.8 553 52.1
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 2.3e-140 503.4 516 54.1
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 2.9e-140 503.1 514 54.5
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 6.5e-140 501.9 520 53.5
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 2.5e-139 500.0 510 52.9
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 2.5e-139 500.0 507 54.6
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 9.8e-136 488.0 504 53.4
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 1.4e-134 484.2 508 53.5
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.2e-133 481.1 507 51.7
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 1.2e-133 481.1 483 54.9
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 1.6e-133 480.7 502 53.4
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 4.5e-133 479.2 507 51.7
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 2.9e-132 476.5 507 51.3
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 7.3e-131 471.9 492 52.4
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 4.7e-130 469.2 523 48.6
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 6.1e-130 468.8 498 52.0
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 8.0e-130 468.4 507 50.5
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 1.8e-129 467.2 508 52.0
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 1.8e-129 467.2 530 50.8
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 2.3e-129 466.8 498 51.0
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 2.0e-128 463.8 516 50.8
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 5.7e-128 462.2 477 54.5
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 4.9e-127 459.1 424 57.3
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 5.4e-126 455.7 509 50.9
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 2.7e-125 453.4 521 48.6
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 4.6e-125 452.6 503 50.1
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 2.5e-123 446.8 522 48.3
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 3.3e-123 446.4 502 50.8
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 3.3e-123 446.4 502 50.8
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 4.3e-123 446.0 508 49.8
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 9.5e-123 444.9 507 49.7
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 1.2e-122 444.5 516 48.4
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 1.6e-122 444.1 512 51.0
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.4e-121 441.0 452 52.7
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 2.3e-121 440.3 515 46.6
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 5.2e-121 439.1 540 46.9
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 5.2e-121 439.1 477 52.4
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.6e-120 436.8 448 54.7
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 2.6e-120 436.8 514 50.0
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 5.8e-120 435.6 435 54.0
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 6.4e-119 432.2 504 49.2
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 1.2e-117 427.9 505 48.5
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.6e-117 427.6 491 47.5
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 4.6e-117 426.0 537 48.8
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 4.6e-117 426.0 516 47.1
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 1.7e-116 424.1 478 50.0
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 8.6e-116 421.8 528 46.8
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 3.3e-115 419.9 520 45.8
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 3.3e-115 419.9 443 51.5
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 3.6e-114 416.4 505 47.3
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 3.1e-113 413.3 507 45.8
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 4.0e-113 412.9 507 45.6
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 4.0e-113 412.9 516 46.9
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 2.6e-112 410.2 500 46.6
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 3.4e-112 409.8 514 44.6
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 3.4e-112 409.8 476 46.4
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.7e-111 407.5 525 45.1
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 2.2e-111 407.1 522 47.1
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 5.4e-110 402.5 526 46.2
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 3.5e-109 399.8 512 44.9
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 1.7e-108 397.5 431 49.7
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 3.0e-108 396.7 453 50.8
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.3e-107 392.9 557 42.9
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 5.6e-107 392.5 519 43.5
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 2.1e-106 390.6 498 45.4
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 3.6e-106 389.8 482 47.1
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 4.4e-104 382.9 506 43.3
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 5.8e-104 382.5 506 41.5
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 1.1e-102 378.3 501 43.5
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.6e-101 372.9 521 40.7
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.3e-100 371.3 506 40.5
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 2.5e-99 367.1 524 45.4
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 3.3e-99 366.7 490 43.7
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 7.3e-99 365.5 509 43.4
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 2.1e-98 364.0 522 44.4
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 2.4e-97 360.5 500 44.4
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 2.0e-96 357.5 516 42.2
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 3.4e-96 356.7 536 41.4
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 3.8e-95 353.2 460 43.7
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 6.4e-95 352.4 285 57.9
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 8.4e-95 352.1 473 41.9
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 2.4e-94 350.5 475 44.4
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 1.3e-92 344.7 496 42.1
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 3.0e-92 343.6 419 48.2
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 1.6e-90 337.8 494 40.1
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 3.6e-90 336.7 504 40.9
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 3.6e-90 336.7 504 40.9
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 6.2e-90 335.9 508 41.1
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 8.1e-90 335.5 509 40.7
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 1.1e-89 335.1 504 40.7
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 3.1e-89 333.6 502 40.8
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 1.7e-87 327.8 385 51.4
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 2.2e-87 327.4 511 40.9
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.3e-84 317.4 233 65.7
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 3.1e-81 307.0 526 38.6
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.2e-80 305.1 516 39.3
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 2.9e-79 300.4 508 39.6
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 3.8e-79 300.1 498 38.8
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 2.3e-76 290.8 506 38.1
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.5e-70 270.8 340 52.9
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 6.9e-65 252.7 334 47.6
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.7e-63 248.1 298 53.7
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 1.9e-62 244.6 174 62.6
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.6e-61 241.5 515 35.7
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.0e-60 238.8 230 54.3
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.4e-57 228.4 371 38.0
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 3.4e-56 223.8 314 45.5
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 7.9e-53 212.6 235 45.1
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 5.1e-52 209.9 314 44.9
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 1.7e-47 194.9 284 39.1
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 5.2e-44 183.3 137 61.3
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 2.6e-43 181.0 340 35.3
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 1.7e-39 168.3 589 26.8
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 5.0e-39 166.8 336 34.8
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 8.5e-39 166.0 346 34.4
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 4.2e-38 163.7 366 38.0
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.4e-36 158.7 283 35.0
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 7.5e-35 152.9 316 32.3
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 9.1e-33 146.0 134 52.2
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 1.1e-30 139.0 214 40.7
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.0e-28 132.5 89 61.8
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.0e-28 132.5 89 61.8
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.4e-28 132.1 273 32.6
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 6.3e-26 123.2 183 39.3
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 9.1e-25 119.4 298 29.5
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.3e-23 115.5 136 52.2
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 1.1e-22 112.5 264 29.9
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 1.1e-22 112.5 264 29.9
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 1.1e-22 112.5 264 29.9
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 2.5e-22 111.3 254 29.9
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-21 107.8 295 27.5
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 1.4e-20 105.5 264 28.4
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 1.4e-20 105.5 264 28.4
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 4.4e-19 100.5 101 59.4
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 3.9e-07 60.8 54 44.4


User provided reference genes

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