Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_014013 Daucus carota HOM05D005717 ORTHO05D007221 0.0e+00 1712.6 1008 100.0
Lj5A138T57 Lonicera japonica HOM05D005717 ORTHO05D007221 0.0e+00 1150.6 1010 65.0
CSS0018836 Camellia sinensis var. sinensis HOM05D005717 ORTHO05D007221 0.0e+00 1116.3 1018 62.9
Dinv36820 Davidia involucrata HOM05D005717 ORTHO05D007221 0.0e+00 1106.7 971 65.4
Rhsim12G0147200 Rhododendron simsii HOM05D005717 ORTHO05D007221 0.0e+00 1100.1 966 64.0
Actinidia24269 Actinidia chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1096.6 966 63.1
Nitab4.5_0002805g0040 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1089.3 998 61.6
GSVIVG01008170001 Vitis vinifera HOM05D005717 ORTHO05D007221 0.0e+00 1087.4 969 61.7
Cc04_g08130 Coffea canephora HOM05D005717 ORTHO05D007221 0.0e+00 1085.5 1007 61.3
Nitab4.5_0000646g0340 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1082.8 990 61.9
Ciclev10018495m.g Citrus clementina HOM05D005717 ORTHO05D007221 0.0e+00 1079.3 966 63.3
Peaxi162Scf00017g03258 Petunia axillaris HOM05D005717 ORTHO05D007221 0.0e+00 1077.8 1002 61.3
Migut.D01493 Erythranthe guttata HOM05D005717 ORTHO05D007221 0.0e+00 1077.4 1013 61.2
Cfa019855 Carpinus fangiana HOM05D005717 ORTHO05D007221 6.9e-312 1073.5 983 62.6
QL10p021360 Quercus lobata HOM05D005717 ORTHO05D007221 3.4e-311 1071.6 969 62.4
Sopen03g033760 Solanum pennellii HOM05D005717 ORTHO05D007221 8.9e-310 1067.0 984 63.8
TAR629G3288 Trochodendron aralioides HOM05D005717 ORTHO05D007221 8.9e-310 1067.0 964 67.2
Oeu031929.1 Olea europaea HOM05D005717 ORTHO05D007221 4.9e-308 1061.2 967 63.4
Atru.chr9.636 Acer truncatum HOM05D005717 ORTHO05D007221 2.4e-307 1058.9 964 62.3
MSTRG.9576 Avicennia marina HOM05D005717 ORTHO05D007221 1.2e-306 1056.6 1008 60.5
Manes.06G080000 Manihot esculenta HOM05D005717 ORTHO05D007221 1.6e-306 1056.2 968 65.9
HanXRQChr16g0501941 Helianthus annuus HOM05D005717 ORTHO05D007221 1.0e-305 1053.5 1021 61.4
CANSAT80G2305 Cannabis sativa HOM05D005717 ORTHO05D007221 3.3e-304 1048.5 973 66.2
MELO3C017258.2 Cucumis melo HOM05D005717 ORTHO05D007221 4.3e-304 1048.1 992 60.1
Potri.012G065200 Populus trichocarpa HOM05D005717 ORTHO05D007221 9.5e-304 1047.0 966 66.1
arahy.Tifrunner.gnm1.ann1.V6HMAT Arachis hypogaea HOM05D005717 ORTHO05D007221 6.2e-303 1044.3 967 60.9
vmacro16471 Vaccinium macrocarpon HOM05D005717 ORTHO05D007221 1.4e-302 1043.1 997 60.3
PGSC0003DMG400024615 Solanum tuberosum HOM05D005717 ORTHO05D007221 3.1e-302 1042.0 981 64.0
Haze_18548 Corylus avellana HOM05D005717 ORTHO05D007221 4.0e-302 1041.6 1061 58.1
Sc04g0003990 Simmondsia chinensis HOM05D005717 ORTHO05D007221 5.2e-302 1041.2 981 61.6
Thecc.03G110500 Theobroma cacao HOM05D005717 ORTHO05D007221 1.5e-301 1039.6 965 65.3
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 5.8e-301 1037.7 983 59.4
Lsat_1_v5_gn_4_112460 Lactuca sativa HOM05D005717 ORTHO05D007221 5.8e-301 1037.7 965 60.2
ClCG06G015370 Citrullus lanatus HOM05D005717 ORTHO05D007221 1.3e-300 1036.6 965 60.7
CsaV3_1G003250 Cucumis sativus L. HOM05D005717 ORTHO05D007221 2.2e-300 1035.8 968 60.7
Duzib205G0984 Durio zibethinus HOM05D005717 ORTHO05D007221 3.7e-300 1035.0 963 65.0
Gohir.A03G072200 Gossypium hirsutum HOM05D005717 ORTHO05D007221 4.9e-300 1034.6 962 65.6
Sabra12G0046300 Salix brachista HOM05D005717 ORTHO05D007221 6.4e-300 1034.2 968 61.6
arahy.Tifrunner.gnm1.ann1.06HQ5Q Arachis hypogaea HOM05D005717 ORTHO05D007221 1.1e-299 1033.5 965 60.7
MD14G1217300 Malus domestica HOM05D005717 ORTHO05D007221 3.2e-299 1031.9 968 63.7
Lj1g0015597 Lotus japonicus HOM05D005717 ORTHO05D007221 6.0e-298 1027.7 976 58.8
RcHm_v2.0_Chr7g0183891 Rosa chinensis HOM05D005717 ORTHO05D007221 3.9e-297 1025.0 966 63.9
Nn4g23582 Nelumbo nucifera HOM05D005717 ORTHO05D007221 1.2e-295 1020.0 1025 62.6
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 1.6e-295 1019.6 993 57.1
MD06G1206600 Malus domestica HOM05D005717 ORTHO05D007221 1.1e-294 1016.9 970 64.8
SalBow1G6140 Salvia bowleyana HOM05D005717 ORTHO05D007221 1.1e-294 1016.9 1060 57.1
Duzib068G1379 Durio zibethinus HOM05D005717 ORTHO05D007221 1.4e-294 1016.5 958 65.2
Gorai.003G103900 Gossypium raimondii HOM05D005717 ORTHO05D007221 4.0e-294 1015.0 963 65.5
Gohir.D03G099000 Gossypium hirsutum HOM05D005717 ORTHO05D007221 1.2e-293 1013.4 961 65.3
CiPaw.16G080600 Carya illinoinensis HOM05D005717 ORTHO05D007221 2.4e-291 1005.7 970 63.6
FvH4_5g13280 Fragaria vesca HOM05D005717 ORTHO05D007221 7.1e-291 1004.2 983 62.4
Hund09972 Selenicereus undatus HOM05D005717 ORTHO05D007221 2.7e-290 1002.3 1041 57.8
VMungo1309G2787 Vigna mungo HOM05D005717 ORTHO05D007221 4.6e-290 1001.5 970 63.9
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 7.8e-290 1000.7 966 58.6
MBI15_g42003_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 1.0e-289 1000.3 967 63.0
Ah.11g047340 Amaranthus hybridus HOM05D005717 ORTHO05D007221 3.0e-289 998.8 1019 58.0
FAN18G3426 Fragaria x ananassa HOM05D005717 ORTHO05D007221 5.1e-289 998.0 984 62.1
AUR62039684 Chenopodium quinoa HOM05D005717 ORTHO05D007221 1.1e-288 996.9 1006 58.9
PGR044G0409 Punica granatum HOM05D005717 ORTHO05D007221 1.5e-288 996.5 970 62.6
EL10Ac5g11198 Beta vulgaris HOM05D005717 ORTHO05D007221 3.3e-288 995.3 1052 56.8
FAN08G0926 Fragaria x ananassa HOM05D005717 ORTHO05D007221 4.3e-288 995.0 984 61.9
SGA_v2.0_scaffold42G16051 Striga asiatica HOM05D005717 ORTHO05D007221 5.6e-288 994.6 966 60.5
FAN13G2659 Fragaria x ananassa HOM05D005717 ORTHO05D007221 2.8e-287 992.3 961 62.1
Prupe.5G211000 Prunus persica HOM05D005717 ORTHO05D007221 5.3e-286 988.0 972 61.9
AUR62032150 Chenopodium quinoa HOM05D005717 ORTHO05D007221 6.9e-286 987.6 1038 57.1
Ca_26377_v3 Cicer arietinum L. HOM05D005717 ORTHO05D007221 1.2e-285 986.9 976 61.3
Lalb_Chr08g0235411 Lupinus albus HOM05D005717 ORTHO05D007221 2.9e-284 982.2 966 60.0
Medtr2g059200 Medicago truncatula HOM05D005717 ORTHO05D007221 2.9e-284 982.2 978 62.1
Dinv38628 Davidia involucrata HOM05D005717 ORTHO05D007221 8.4e-284 980.7 961 60.7
TWI81G0191 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 4.6e-282 974.9 969 57.9
Psat1g029000 Pisum sativum HOM05D005717 ORTHO05D007221 1.3e-281 973.4 972 61.6
TPR.G15323 Trifolium pratense HOM05D005717 ORTHO05D007221 1.7e-281 973.0 975 61.6
TWI60G0681 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 2.3e-281 972.6 964 58.2
Glyma.04G158400 Glycine max HOM05D005717 ORTHO05D007221 2.6e-277 959.1 962 62.5
Eucgr.K02631 Eucalyptus grandis HOM05D005717 ORTHO05D007221 7.6e-277 957.6 975 61.2
CDE01G0371 Ceratophyllum demersum HOM05D005717 ORTHO05D007221 1.6e-274 949.9 967 56.0
Phvul.009G204400 Phaseolus vulgaris HOM05D005717 ORTHO05D007221 6.7e-273 944.5 978 60.3
Glyma.06G206800 Glycine max HOM05D005717 ORTHO05D007221 1.1e-272 943.7 970 60.1
Solyc03g114690.4 Solanum lycopersicum HOM05D005717 ORTHO05D007221 3.8e-268 928.7 834 62.9
unitig_578.g15938 Utricularia gibba HOM05D005717 ORTHO05D007221 7.4e-264 914.4 967 56.4
PSO478G4609 Papaver somniferum HOM05D005717 ORTHO05D007221 4.9e-260 901.7 1033 53.5
PSO017G2079 Papaver somniferum HOM05D005717 ORTHO05D007221 6.7e-257 891.3 1031 56.5
Carub.0005s0880 Capsella rubella HOM05D005717 ORTHO05D007221 2.1e-250 869.8 968 52.5
AL5G20890 Arabidopsis lyrata HOM05D005717 ORTHO05D007221 2.5e-248 862.8 968 56.3
AT3G42660 Arabidopsis thaliana HOM05D005717 ORTHO05D007221 2.2e-244 849.7 967 56.5
Thhalv10016196m.g Eutrema salsugineum HOM05D005717 ORTHO05D007221 9.4e-243 844.3 970 56.2
Aa31LG4G13310 Aethionema arabicum HOM05D005717 ORTHO05D007221 1.6e-242 843.6 849 61.4
CARHR153710 Cardamine hirsuta HOM05D005717 ORTHO05D007221 4.7e-242 842.0 980 56.6
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 5.1e-241 838.6 970 51.1
THA.LOC104804979 Tarenaya hassleriana HOM05D005717 ORTHO05D007221 2.2e-239 833.2 965 56.3
Sp5g17930 Schrenkiella parvula HOM05D005717 ORTHO05D007221 3.1e-238 829.3 972 54.9
SpUn0079_0020 Schrenkiella parvula HOM05D005717 ORTHO05D007221 3.1e-238 829.3 972 54.9
Os09g0241100 Oryza sativa ssp. japonica HOM05D005717 ORTHO05D007221 1.1e-235 820.8 1052 48.4
BcaB01g01238 Brassica carinata HOM05D005717 ORTHO05D007221 1.5e-235 820.5 966 55.0
C03p68460 Brassica napus HOM05D005717 ORTHO05D007221 8.0e-234 814.7 973 55.1
BolC3t19078H Brassica oleracea HOM05D005717 ORTHO05D007221 8.0e-234 814.7 972 55.0
BcaC01g02114 Brassica carinata HOM05D005717 ORTHO05D007221 3.9e-233 812.4 972 54.9
A06p22690 Brassica napus HOM05D005717 ORTHO05D007221 4.4e-232 808.9 964 54.9
BraA06t25353Z Brassica rapa HOM05D005717 ORTHO05D007221 4.8e-231 805.4 963 54.3
ATR0691G143 Amborella trichopoda HOM05D005717 ORTHO05D007221 3.2e-219 766.1 903 51.2
SEGI_19386 Sequoiadendron giganteum HOM05D005717 ORTHO05D007221 4.4e-216 755.7 967 49.1
Zm00001eb308160 Zea mays HOM05D005717 ORTHO05D007221 2.7e-213 746.5 778 54.9
AagrBONN_evm.TU.Sc2ySwM_344.3979 Anthoceros agrestis HOM05D005717 ORTHO05D007221 3.7e-183 646.4 856 46.5
Mapoly0112s0022 Marchantia polymorpha HOM05D005717 ORTHO05D007221 1.7e-172 610.9 979 45.3
SHI19002 Sapria himalayana HOM05D005717 ORTHO05D007221 1.0e-156 558.5 627 57.9
SMO201G0059 Selaginella moellendorffii HOM05D005717 ORTHO05D007221 2.2e-151 540.8 837 44.7
HPP92_020490 Vanilla planifolia HOM05D005717 ORTHO05D007221 2.5e-134 484.2 512 55.1
Pp3c26_14490 Physcomitrium patens HOM05D005717 ORTHO05D007221 2.0e-128 464.5 558 46.2
CBR_g19153 Chara braunii HOM05D005717 ORTHO05D007221 2.9e-127 460.7 805 37.1
HPP92_020489 Vanilla planifolia HOM05D005717 ORTHO05D007221 2.7e-117 427.6 505 50.5
MCO04G151 Micromonas commoda HOM05D005717 ORTHO05D007221 4.3e-94 350.5 873 30.8
PRCOL_00001230 Prasinoderma coloniale HOM05D005717 ORTHO05D007221 4.3e-86 323.9 871 30.4
SHI19003 Sapria himalayana HOM05D005717 ORTHO05D007221 5.2e-76 290.4 372 49.7
Cre16.g652950 Chlamydomonas reinhardtii HOM05D005717 ORTHO05D007221 1.2e-64 252.7 872 28.3
Peaxi162Scf00417g01311 Petunia axillaris HOM05D005717 ORTHO05D007221 2.9e-58 231.5 362 44.2
Peaxi162Scf00417g01333 Petunia axillaris HOM05D005717 ORTHO05D007221 1.2e-51 209.5 172 63.4
Lsat_1_v5_gn_5_133280 Lactuca sativa HOM05D005717 ORTHO05D007221 2.2e-50 205.3 231 52.4
Lsat_1_v5_gn_4_132261 Lactuca sativa HOM05D005717 ORTHO05D007221 7.4e-46 190.3 232 48.7
Actinidia04785 Actinidia chinensis HOM05D005717 ORTHO05D007221 8.7e-23 113.6 67 77.6
C03p68400 Brassica napus HOM05D005717 ORTHO05D007221 3.8e-18 98.2 90 57.8
Medtr8g432590 Medicago truncatula HOM05D005717 ORTHO05D007221 6.5e-18 97.4 80 61.2
BolC3t19074H Brassica oleracea HOM05D005717 ORTHO05D007221 1.1e-17 96.7 90 56.7
A06p22750 Brassica napus HOM05D005717 ORTHO05D007221 3.9e-15 88.2 105 50.5
Lsat_1_v5_gn_4_12100 Lactuca sativa HOM05D005717 ORTHO05D007221 3.9e-15 88.2 115 47.8
Medtr2g090685 Medicago truncatula HOM05D005717 ORTHO05D007221 6.7e-15 87.4 66 63.6
BraA06t25356Z Brassica rapa HOM05D005717 ORTHO05D007221 8.8e-15 87.0 90 55.6
MBI16_g18971_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 7.4e-14 84.0 154 37.7
Actinidia04786 Actinidia chinensis HOM05D005717 ORTHO05D007221 2.6e-11 75.5 218 33.0
Hma1.2p1_0733F.1_g210250 Hydrangea macrophylla HOM05D005717 ORTHO05D007221 2.5e-09 68.9 110 47.3
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 4.2e-09 68.2 37 83.8


User provided reference genes

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