Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 3380.9 1751 100.0
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 1803.5 1846 55.7
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 1803.1 1751 57.1
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1801.2 1462 63.6
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 1793.5 1791 55.2
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 1783.1 1862 54.3
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 1781.5 1532 60.5
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 1760.3 1764 55.3
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 1760.0 1769 55.2
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 1753.4 1869 53.2
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 1751.5 1777 55.3
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1748.8 1457 61.6
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 1739.2 1754 54.8
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 1736.9 1852 52.4
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1734.2 1754 54.6
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1733.4 1754 54.6
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1729.5 1763 55.1
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 1728.0 1764 53.9
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 1723.0 1754 54.5
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 1713.0 1764 54.1
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 1709.5 1862 53.0
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 1698.7 1731 54.8
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 1696.0 1929 51.4
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1687.5 1634 55.1
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1682.5 1729 53.9
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 1674.1 1768 52.6
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1668.3 1726 53.5
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 1666.7 1726 53.4
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1654.8 1733 53.1
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1649.8 1736 52.8
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1648.3 1738 52.6
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1646.3 1776 51.8
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 1646.3 1747 52.8
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1645.9 1881 50.5
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 1640.6 1776 52.5
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 1637.9 1750 52.0
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1636.3 1783 51.7
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 1635.5 1788 50.3
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 1635.2 1770 51.8
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1633.2 1812 50.9
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1630.9 1861 50.1
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 1630.5 1748 52.4
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1629.8 1790 51.5
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 1629.4 1739 52.5
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 1626.3 1769 52.0
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1622.1 1857 49.7
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1620.1 1749 53.1
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1614.0 1723 52.8
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1612.4 1725 52.5
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 1612.0 1755 52.0
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 1611.7 1739 52.4
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 1611.3 1742 52.7
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 1606.7 1556 57.5
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 1605.1 1755 51.8
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1602.8 1758 51.1
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 1598.2 1776 51.2
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1595.9 1746 50.5
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 1595.9 1817 49.6
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 1595.5 1776 51.0
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 1590.1 1755 50.2
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1588.2 1736 52.0
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 1588.2 1801 50.0
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 1584.3 1765 49.6
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 1583.5 1747 51.3
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1580.5 1717 52.9
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1580.5 1717 52.9
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 1578.9 1797 50.1
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 1575.8 1768 50.5
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 1575.1 1825 50.5
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1567.7 1771 50.3
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1565.1 1249 64.2
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1564.7 1768 50.1
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 1564.7 1780 49.2
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 1564.7 1734 51.7
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1564.3 1766 50.3
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 1562.7 1811 49.6
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 1562.0 1771 49.9
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1560.4 1762 50.2
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1555.4 1803 49.1
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 1553.9 1772 49.9
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1552.3 1754 50.1
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 1549.3 1760 49.9
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 1548.5 1391 58.3
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1545.4 1775 49.9
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 1532.7 1777 49.2
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1531.2 1785 49.2
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1523.8 1756 49.9
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 1522.7 1481 53.9
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1510.7 1758 49.1
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 1506.5 1754 50.7
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1503.0 1757 48.5
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1489.9 1807 48.7
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1484.2 1762 47.4
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1480.7 1847 48.5
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 1479.2 1896 46.5
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 1475.7 1762 48.2
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1379.0 1149 62.1
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1376.7 1381 52.6
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1316.6 1743 44.7
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1206.0 1167 57.2
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 1.6e-285 987.3 1760 38.5
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 3.1e-278 963.0 995 55.7
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 6.8e-265 918.7 1704 37.0
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 2.2e-263 913.7 1655 36.2
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 3.4e-256 889.8 880 53.5
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 4.6e-253 879.4 1637 35.7
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 3.9e-252 876.3 1917 33.2
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.1e-241 841.6 1632 34.3
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 2.8e-234 817.0 782 54.9
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 3.4e-216 756.9 885 50.6
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 6.0e-213 746.1 1040 44.3
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 1.6e-210 738.0 946 48.2
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.0e-204 718.8 976 45.3
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 5.0e-199 699.9 749 49.0
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 2.2e-191 674.5 1382 31.9
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 3.3e-179 634.0 1799 28.1
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 1.5e-166 592.0 1076 36.5
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 9.2e-153 546.2 479 57.6
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 5.9e-152 543.5 548 54.0
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 2.3e-140 505.0 820 41.1
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 4.6e-128 464.2 657 42.0
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.3e-122 446.0 548 45.3
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 3.8e-114 417.9 379 58.3
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 7.1e-105 387.1 476 44.1
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.2e-104 386.3 469 44.3
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 4.1e-92 344.7 281 64.1
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 1.0e-74 287.0 585 38.8
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 2.8e-69 268.9 420 40.0
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 2.2e-53 216.1 388 38.7
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 2.8e-53 215.7 211 50.2
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 4.8e-53 214.9 357 37.8
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 4.5e-43 181.8 345 37.4
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 4.0e-39 168.7 172 51.2
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 9.8e-38 164.1 634 29.3
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 2.4e-36 159.5 135 55.6
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 2.7e-35 156.0 1196 20.7
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 2.8e-32 146.0 163 44.2
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 3.4e-30 139.0 162 43.2
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 5.4e-28 131.7 509 28.5
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 2.0e-27 129.8 163 39.3
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 1.7e-26 126.7 86 73.3
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 3.0e-26 125.9 427 30.0
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 3.0e-26 125.9 170 44.7
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 3.9e-26 125.6 117 57.3
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 5.0e-26 125.2 112 57.1
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 3.1e-23 115.9 429 26.1
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 4.9e-21 108.6 129 40.3
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 1.1e-20 107.5 102 53.9
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 1.4e-20 107.1 221 34.8
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 4.1e-20 105.5 80 60.0
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 1.7e-18 100.1 142 45.8
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 4.3e-17 95.5 377 27.6
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 1.0e-10 74.3 56 62.5
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 1.3e-10 73.9 71 52.1
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 1.7e-10 73.6 235 27.7
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 4.3e-09 68.9 55 58.2
RcHm_v2.0_Chr1g0361181 Rosa chinensis HOM05D004392 ORTHO05D004846 1.2e-08 67.4 83 36.1
Psat0s2154g0040 Pisum sativum HOM05D003471 ORTHO05D004079 1.4e-07 63.9 57 63.2
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 3.1e-07 62.8 71 46.5


User provided reference genes

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