Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013780 Daucus carota HOM05D000578 ORTHO05D000422 2.6e-106 388.7 189 100.0
DCAR_017589 Daucus carota HOM05D000578 ORTHO05D000422 2.3e-54 216.1 168 61.3
Nitab4.5_0003230g0030 Nicotiana tabacum HOM05D000578 ORTHO05D000422 9.2e-43 177.6 167 53.9
Nitab4.5_0000347g0020 Nicotiana tabacum HOM05D000578 ORTHO05D000422 2.1e-42 176.4 167 54.5
Solyc07g062160.3 Solanum lycopersicum HOM05D000578 ORTHO05D000422 1.7e-41 173.3 168 54.2
Dinv13364 Davidia involucrata HOM05D000578 ORTHO05D000422 5.1e-41 171.8 175 49.7
Sopen07g030440 Solanum pennellii HOM05D000578 ORTHO05D000422 6.6e-41 171.4 168 54.8
Cc05_g10720 Coffea canephora HOM05D000578 ORTHO05D000422 1.5e-40 170.2 168 54.2
PGSC0003DMG400007061 Solanum tuberosum HOM05D000578 ORTHO05D000422 7.3e-40 167.9 184 50.5
CSS0036169 Camellia sinensis var. sinensis HOM05D000578 ORTHO05D000422 6.2e-39 164.9 175 50.3
Peaxi162Scf00111g01322 Petunia axillaris HOM05D000578 ORTHO05D000422 9.0e-38 161.0 175 49.1
Rhsim06G0211700 Rhododendron simsii HOM05D000578 ORTHO05D000422 3.4e-37 159.1 154 50.6
Cfa019515 Carpinus fangiana HOM05D000578 ORTHO05D000422 9.9e-37 157.5 168 47.6
COL.COLO4_17474 Corchorus olitorius HOM05D000578 ORTHO05D000422 1.7e-36 156.8 175 46.9
Lj8A146G67 Lonicera japonica HOM05D000578 ORTHO05D000422 1.7e-36 156.8 176 48.9
Actinidia39421 Actinidia chinensis HOM05D000578 ORTHO05D000422 1.1e-35 154.1 171 47.4
Atru.chr2.1936 Acer truncatum HOM05D000578 ORTHO05D000422 1.4e-35 153.7 182 46.2
Atru.chr2.1973 Acer truncatum HOM05D000578 ORTHO05D000422 5.4e-35 151.8 182 45.1
GSVIVG01014097001 Vitis vinifera HOM05D000578 ORTHO05D000422 9.3e-35 151.0 155 51.0
TWI39G0909 Tripterygium wilfordii HOM05D000578 ORTHO05D000422 4.6e-34 148.7 168 45.2
MSTRG.12861 Avicennia marina HOM05D000578 ORTHO05D000422 2.3e-33 146.4 168 47.0
CiPaw.11G155800 Carya illinoinensis HOM05D000578 ORTHO05D000422 3.0e-33 146.0 168 49.4
Thecc.07G132800 Theobroma cacao HOM05D000578 ORTHO05D000422 3.9e-33 145.6 166 44.6
Gohir.D01G038400 Gossypium hirsutum HOM05D000578 ORTHO05D000422 5.1e-33 145.2 175 44.6
Gorai.002G047200 Gossypium raimondii HOM05D000578 ORTHO05D000422 5.1e-33 145.2 175 44.6
Hma1.2p1_0050F.1_g028790 Hydrangea macrophylla HOM05D000578 ORTHO05D000422 6.6e-33 144.8 166 46.4
Potri.011G105400 Populus trichocarpa HOM05D000578 ORTHO05D000422 6.6e-33 144.8 168 44.0
SalBow7G1681 Salvia bowleyana HOM05D000578 ORTHO05D000422 6.6e-33 144.8 185 44.9
CSS0037476 Camellia sinensis var. sinensis HOM05D000578 ORTHO05D000422 1.5e-32 143.7 154 48.7
CSS0046793 Camellia sinensis var. sinensis HOM05D000578 ORTHO05D000422 1.5e-32 143.7 154 48.7
QL08p024210 Quercus lobata HOM05D000578 ORTHO05D000422 1.9e-32 143.3 168 46.4
TWI38G0071 Tripterygium wilfordii HOM05D000578 ORTHO05D000422 1.9e-32 143.3 169 44.4
Actinidia12603 Actinidia chinensis HOM05D000578 ORTHO05D000422 2.5e-32 142.9 143 50.3
TAR624G1389 Trochodendron aralioides HOM05D000578 ORTHO05D000422 2.5e-32 142.9 174 44.3
ECA240G2705 Erigeron canadensis HOM05D000578 ORTHO05D000422 4.3e-32 142.1 136 52.9
CsaV3_4G008210 Cucumis sativus L. HOM05D000578 ORTHO05D000422 1.3e-31 140.6 128 53.1
Gohir.A01G047800 Gossypium hirsutum HOM05D000578 ORTHO05D000422 1.6e-31 140.2 175 43.4
Manes.15G098000 Manihot esculenta HOM05D000578 ORTHO05D000422 2.1e-31 139.8 149 47.7
Duzib213G1040 Durio zibethinus HOM05D000578 ORTHO05D000422 2.8e-31 139.4 146 49.3
Ciclev10021488m.g Citrus clementina HOM05D000578 ORTHO05D000422 4.8e-31 138.7 119 55.5
MELO3C016115.2 Cucumis melo HOM05D000578 ORTHO05D000422 4.8e-31 138.7 128 52.3
Lj3g0021140 Lotus japonicus HOM05D000578 ORTHO05D000422 4.8e-31 138.7 152 46.1
Sc16g0007740 Simmondsia chinensis HOM05D000578 ORTHO05D000422 6.2e-31 138.3 175 45.1
ClCG07G010120 Citrullus lanatus HOM05D000578 ORTHO05D000422 8.1e-31 137.9 184 41.8
Duzib268G1026 Durio zibethinus HOM05D000578 ORTHO05D000422 8.1e-31 137.9 160 43.8
HanXRQChr14g0439351 Helianthus annuus HOM05D000578 ORTHO05D000422 2.4e-30 136.3 147 49.0
Lj1A824G61 Lonicera japonica HOM05D000578 ORTHO05D000422 2.4e-30 136.3 148 48.6
RcHm_v2.0_Chr5g0029541 Rosa chinensis HOM05D000578 ORTHO05D000422 2.4e-30 136.3 153 47.1
Lj3g0020526 Lotus japonicus HOM05D000578 ORTHO05D000422 3.1e-30 136.0 152 45.4
TAR626G1594 Trochodendron aralioides HOM05D000578 ORTHO05D000422 4.0e-30 135.6 127 55.1
AUR62019649 Chenopodium quinoa HOM05D000578 ORTHO05D000422 5.3e-30 135.2 121 52.9
Sc03g0010700 Simmondsia chinensis HOM05D000578 ORTHO05D000422 6.9e-30 134.8 170 44.7
MSTRG.14984 Avicennia marina HOM05D000578 ORTHO05D000422 9.0e-30 134.4 168 45.2
Cpa.g.sc77.61 Carica papaya HOM05D000578 ORTHO05D000422 2.0e-29 133.3 142 47.2
Haze_09247 Corylus avellana HOM05D000578 ORTHO05D000422 2.6e-29 132.9 178 42.7
ECA236G3912 Erigeron canadensis HOM05D000578 ORTHO05D000422 5.8e-29 131.7 145 50.3
Nitab4.5_0000092g0380 Nicotiana tabacum HOM05D000578 ORTHO05D000422 5.8e-29 131.7 167 45.5
PSO675G0984 Papaver somniferum HOM05D000578 ORTHO05D000422 5.8e-29 131.7 169 42.6
Sed0013847 Sechium edule HOM05D000578 ORTHO05D000422 5.8e-29 131.7 181 39.8
EL10Ac4g08416 Beta vulgaris HOM05D000578 ORTHO05D000422 7.6e-29 131.3 127 50.4
AUR62039579 Chenopodium quinoa HOM05D000578 ORTHO05D000422 9.9e-29 131.0 123 50.4
vmacro11970 Vaccinium macrocarpon HOM05D000578 ORTHO05D000422 9.9e-29 131.0 214 38.3
Sed0025476 Sechium edule HOM05D000578 ORTHO05D000422 1.3e-28 130.6 170 41.2
Lsat_1_v5_gn_5_126341 Lactuca sativa HOM05D000578 ORTHO05D000422 1.7e-28 130.2 131 51.1
PSO541G0141 Papaver somniferum HOM05D000578 ORTHO05D000422 2.2e-28 129.8 169 42.6
Gohir.D11G303000 Gossypium hirsutum HOM05D000578 ORTHO05D000422 2.9e-28 129.4 167 40.7
Gorai.007G331700 Gossypium raimondii HOM05D000578 ORTHO05D000422 2.9e-28 129.4 167 40.7
MD11G1269800 Malus domestica HOM05D000578 ORTHO05D000422 2.9e-28 129.4 130 48.5
Prupe.4G156600 Prunus persica HOM05D000578 ORTHO05D000422 4.9e-28 128.6 129 47.3
TPR.G13101 Trifolium pratense HOM05D000578 ORTHO05D000422 4.9e-28 128.6 170 42.9
MD03G1247700 Malus domestica HOM05D000578 ORTHO05D000422 6.4e-28 128.3 130 46.9
Nitab4.5_0002943g0010 Nicotiana tabacum HOM05D000578 ORTHO05D000422 6.4e-28 128.3 168 44.0
HanXRQChr10g0305591 Helianthus annuus HOM05D000578 ORTHO05D000422 8.4e-28 127.9 178 44.4
Lalb_Chr01g0016361 Lupinus albus HOM05D000578 ORTHO05D000422 1.4e-27 127.1 166 40.4
Gohir.A11G289400 Gossypium hirsutum HOM05D000578 ORTHO05D000422 1.9e-27 126.7 167 40.1
Lalb_Chr20g0109141 Lupinus albus HOM05D000578 ORTHO05D000422 1.9e-27 126.7 170 40.6
PGR083G2431 Punica granatum HOM05D000578 ORTHO05D000422 2.4e-27 126.3 163 44.2
Aqoxy1G01904 Aquilegia oxysepala HOM05D000578 ORTHO05D000422 4.2e-27 125.6 183 39.9
Eucgr.F01367 Eucalyptus grandis HOM05D000578 ORTHO05D000422 4.2e-27 125.6 168 39.9
Glyma.09G099000 Glycine max HOM05D000578 ORTHO05D000422 4.2e-27 125.6 174 42.5
Ca_03930_v3 Cicer arietinum L. HOM05D000578 ORTHO05D000422 7.1e-27 124.8 169 40.2
FAN21G3080 Fragaria x ananassa HOM05D000578 ORTHO05D000422 7.1e-27 124.8 146 45.9
Medtr2g073370 Medicago truncatula HOM05D000578 ORTHO05D000422 7.1e-27 124.8 170 40.6
Manes.03G085600 Manihot esculenta HOM05D000578 ORTHO05D000422 9.3e-27 124.4 161 41.0
Sabra11G0080700 Salix brachista HOM05D000578 ORTHO05D000422 1.2e-26 124.0 223 33.6
Glyma.13G265000 Glycine max HOM05D000578 ORTHO05D000422 2.1e-26 123.2 169 42.6
Lsat_1_v5_gn_9_100420 Lactuca sativa HOM05D000578 ORTHO05D000422 2.7e-26 122.9 147 46.3
Phvul.005G076700 Phaseolus vulgaris HOM05D000578 ORTHO05D000422 2.7e-26 122.9 181 39.8
VMungo1127G0774 Vigna mungo HOM05D000578 ORTHO05D000422 2.7e-26 122.9 141 44.7
FvH4_3g17750 Fragaria vesca HOM05D000578 ORTHO05D000422 3.5e-26 122.5 148 44.6
FAN11G1029 Fragaria x ananassa HOM05D000578 ORTHO05D000422 4.6e-26 122.1 183 38.3
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 6.0e-26 121.7 99 55.6
FAN16G1193 Fragaria x ananassa HOM05D000578 ORTHO05D000422 6.0e-26 121.7 148 43.9
SGA_v2.0_scaffold73G24385 Striga asiatica HOM05D000578 ORTHO05D000422 7.9e-26 121.3 137 44.5
CANSAT56G3981 Cannabis sativa HOM05D000578 ORTHO05D000422 1.0e-25 120.9 165 43.6
Oeu025327.2 Olea europaea HOM05D000578 ORTHO05D000422 1.0e-25 120.9 199 37.7
Ah.06g187680 Amaranthus hybridus HOM05D000578 ORTHO05D000422 1.8e-25 120.2 124 47.6
FAN25G0238 Fragaria x ananassa HOM05D000578 ORTHO05D000422 3.9e-25 119.0 150 44.0
arahy.Tifrunner.gnm1.ann1.Q6JUAH Arachis hypogaea HOM05D000578 ORTHO05D000422 6.7e-25 118.2 155 41.9
Phvul.011G168500 Phaseolus vulgaris HOM05D000578 ORTHO05D000422 4.3e-24 115.5 144 42.4
Migut.M00693 Erythranthe guttata HOM05D000578 ORTHO05D000422 5.6e-24 115.2 129 46.5
CDE02G2836 Ceratophyllum demersum HOM05D000578 ORTHO05D000422 2.8e-23 112.8 121 45.5
unitig_85.g27428 Utricularia gibba HOM05D000578 ORTHO05D000422 1.1e-22 110.9 128 46.1
CAN.G594.25 Capsicum annuum HOM05D000578 ORTHO05D000422 1.4e-22 110.5 171 41.5
Oeu010030.1 Olea europaea HOM05D000578 ORTHO05D000422 9.0e-22 107.8 168 41.1
PGSC0003DMG400019025 Solanum tuberosum HOM05D000578 ORTHO05D000422 2.6e-21 106.3 100 51.0
Thhalv10018946m.g Eutrema salsugineum HOM05D000578 ORTHO05D000422 3.4e-21 105.9 128 46.9
unitig_37.g12555 Utricularia gibba HOM05D000578 ORTHO05D000422 3.4e-21 105.9 149 43.6
MBI07_g00481_MAGBIO Magnolia biondii HOM05D000578 ORTHO05D000422 7.6e-21 104.8 183 39.9
CARHR072090 Cardamine hirsuta HOM05D000578 ORTHO05D000422 9.9e-21 104.4 110 49.1
BcaB02g07172 Brassica carinata HOM05D000578 ORTHO05D000422 1.3e-20 104.0 129 43.4
BraA07t31894Z Brassica rapa HOM05D000578 ORTHO05D000422 1.3e-20 104.0 127 44.9
Oeu058457.1 Olea europaea HOM05D000578 ORTHO05D000422 1.7e-20 103.6 174 40.8
AL2G39000 Arabidopsis lyrata HOM05D000578 ORTHO05D000422 2.9e-20 102.8 127 44.9
Carub.0002s2545 Capsella rubella HOM05D000578 ORTHO05D000422 2.9e-20 102.8 159 40.9
BcaC08g47429 Brassica carinata HOM05D000578 ORTHO05D000422 3.8e-20 102.4 109 47.7
CDE10G0802 Ceratophyllum demersum HOM05D000578 ORTHO05D000422 4.9e-20 102.1 102 48.0
Sp5g33690 Schrenkiella parvula HOM05D000578 ORTHO05D000422 8.4e-20 101.3 151 40.4
HanXRQChr13g0389721 Helianthus annuus HOM05D000578 ORTHO05D000422 1.1e-19 100.9 172 37.8
A07p27510 Brassica napus HOM05D000578 ORTHO05D000422 1.4e-19 100.5 164 40.9
Lalb_Chr03g0031311 Lupinus albus HOM05D000578 ORTHO05D000422 1.9e-19 100.1 133 42.1
Aa31LG4G2360 Aethionema arabicum HOM05D000578 ORTHO05D000422 2.5e-19 99.8 129 43.4
BcaB05g25147 Brassica carinata HOM05D000578 ORTHO05D000422 2.5e-19 99.8 187 39.0
BcaC08g45415 Brassica carinata HOM05D000578 ORTHO05D000422 7.1e-19 98.2 160 41.2
A07p43870 Brassica napus HOM05D000578 ORTHO05D000422 1.6e-18 97.1 128 42.2
C06p30450 Brassica napus HOM05D000578 ORTHO05D000422 2.1e-18 96.7 160 41.2
HPP92_009874 Vanilla planifolia HOM05D000578 ORTHO05D000422 3.5e-18 95.9 143 39.2
AT1G78600 Arabidopsis thaliana HOM05D000578 ORTHO05D000422 3.0e-17 92.8 127 41.7
Zm00001eb283990 Zea mays HOM05D000578 ORTHO05D000422 3.0e-17 92.8 117 43.6
BraA02t07231Z Brassica rapa HOM05D000578 ORTHO05D000422 3.9e-17 92.4 189 34.9
BolC6t40269H Brassica oleracea HOM05D000578 ORTHO05D000422 5.1e-17 92.0 141 39.7
CDE04G3632 Ceratophyllum demersum HOM05D000050 ORTHO05D002548 6.7e-17 91.7 104 43.3
ATR0602G117 Amborella trichopoda HOM05D000578 ORTHO05D000422 3.3e-16 89.4 171 32.7
Sopen12g001390 Solanum pennellii HOM05D000578 ORTHO05D000422 3.3e-16 89.4 84 50.0
BcaC03g15826 Brassica carinata HOM05D000578 ORTHO05D000422 4.3e-16 89.0 153 39.9
C02p35680 Brassica napus HOM05D000578 ORTHO05D000422 4.3e-16 89.0 153 39.9
C06p52500 Brassica napus HOM05D000578 ORTHO05D000422 4.3e-16 89.0 128 40.6
A02p22250 Brassica napus HOM05D000578 ORTHO05D000422 7.4e-16 88.2 180 36.1
Solyc12g005420.2 Solanum lycopersicum HOM05D000578 ORTHO05D000422 7.4e-16 88.2 84 50.0
BraA07t30393Z Brassica rapa HOM05D000578 ORTHO05D000422 9.6e-16 87.8 184 37.0
BolC2t09588H Brassica oleracea HOM05D000578 ORTHO05D000422 1.6e-15 87.0 172 35.5
Zm00001eb120740 Zea mays HOM05D000578 ORTHO05D000422 3.7e-15 85.9 124 42.7
Nn6g34424 Nelumbo nucifera HOM05D000578 ORTHO05D000422 1.1e-14 84.3 107 43.9
Hund10434 Selenicereus undatus HOM05D000578 ORTHO05D000422 2.4e-14 83.2 90 45.6
Zm00001eb376730 Zea mays HOM05D000578 ORTHO05D000422 2.4e-14 83.2 141 35.5
Os01g0202500 Oryza sativa ssp. japonica HOM05D000578 ORTHO05D000422 6.9e-14 81.6 119 38.7
Zm00001eb347950 Zea mays HOM05D000578 ORTHO05D000422 9.0e-14 81.3 143 35.0
Os05g0204600 Oryza sativa ssp. japonica HOM05D000578 ORTHO05D000422 2.0e-13 80.1 128 41.4
CAN.G375.50 Capsicum annuum HOM05D000578 ORTHO05D000422 3.4e-13 79.3 75 54.7
SalBow8G5149 Salvia bowleyana HOM05D000578 ORTHO05D000422 5.8e-13 78.6 88 48.9
Zm00001eb270930 Zea mays HOM05D000578 ORTHO05D000422 1.0e-12 77.8 142 36.6
SalBow8G1065 Salvia bowleyana HOM05D000578 ORTHO05D000422 2.2e-12 76.6 103 41.7
Os06g0152200 Oryza sativa ssp. japonica HOM05D000578 ORTHO05D000422 1.9e-11 73.6 132 35.6
Dinv26708 Davidia involucrata HOM05D000578 ORTHO05D000422 1.8e-09 67.0 83 45.8
Sabra11G0075200 Salix brachista HOM05D000578 ORTHO05D000422 5.7e-08 62.0 76 42.1
Potri.001G384000 Populus trichocarpa HOM05D000578 ORTHO05D000422 2.2e-07 60.1 76 42.1
Glyma.12G233900 Glycine max HOM05D000578 ORTHO05D000422 1.1e-06 57.8 56 48.2
CiPaw.12G110700 Carya illinoinensis HOM05D000578 ORTHO05D000422 9.0e-06 54.7 94 38.3


User provided reference genes

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