Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 8.3e-304 1046.2 514 100.0
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 3.4e-180 635.6 516 63.6
PGSC0003DMG400010688 Solanum tuberosum HOM05D006573 ORTHO05D008073 1.4e-173 613.6 512 61.3
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 8.9e-173 610.9 515 61.6
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 3.4e-172 609.0 475 65.3
Sopen04g022050 Solanum pennellii HOM05D006573 ORTHO05D008073 3.7e-171 605.5 516 60.3
Nitab4.5_0012098g0010 Nicotiana tabacum HOM05D006573 ORTHO05D008073 1.1e-170 604.0 516 60.9
Nitab4.5_0000344g0030 Nicotiana tabacum HOM05D006573 ORTHO05D008073 3.2e-170 602.4 516 60.5
Solyc04g050930.3 Solanum lycopersicum HOM05D006573 ORTHO05D008073 3.2e-170 602.4 516 59.9
CAN.G29.20 Capsicum annuum HOM05D006573 ORTHO05D008073 4.1e-170 602.1 516 60.1
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 4.1e-170 602.1 515 60.2
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 5.4e-170 601.7 515 60.8
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 7.8e-169 597.8 475 64.2
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 7.8e-169 597.8 475 63.8
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 8.6e-168 594.3 480 63.5
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 1.1e-167 594.0 487 63.2
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 1.1e-167 594.0 503 60.8
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 1.5e-167 593.6 517 60.2
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 7.3e-167 591.3 519 60.5
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 2.8e-166 589.3 508 59.6
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 4.7e-166 588.6 502 60.4
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 6.2e-166 588.2 406 71.9
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 6.2e-166 588.2 479 62.0
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 1.8e-165 586.6 513 59.8
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 5.2e-165 585.1 459 64.9
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 1.2e-164 583.9 502 60.6
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 1.2e-164 583.9 502 60.6
Lj2A407T38 Lonicera japonica HOM05D006573 ORTHO05D008073 2.0e-164 583.2 420 69.8
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 4.4e-164 582.0 500 59.8
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 7.6e-164 581.3 406 70.2
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 9.9e-164 580.9 468 61.3
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.7e-163 580.1 517 59.6
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 3.7e-163 578.9 517 60.0
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 4.9e-163 578.6 475 63.2
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 6.4e-163 578.2 517 59.4
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 6.4e-163 578.2 523 59.1
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 6.4e-163 578.2 476 62.0
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 1.9e-162 576.6 476 62.6
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 3.2e-162 575.9 523 58.7
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 4.1e-162 575.5 396 71.2
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 4.1e-162 575.5 502 60.0
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 5.4e-162 575.1 529 58.4
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 7.1e-162 574.7 494 61.9
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 9.2e-162 574.3 570 54.0
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.2e-161 573.9 523 58.5
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 4.6e-161 572.0 498 59.6
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 7.8e-161 571.2 414 67.9
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 1.0e-160 570.9 414 68.1
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 6.6e-160 568.2 393 69.5
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 1.5e-159 567.0 416 65.9
Peaxi162Scf01011g00215 Petunia axillaris HOM05D006573 ORTHO05D008073 1.9e-159 566.6 519 57.6
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 1.2e-158 563.9 427 65.8
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 2.8e-158 562.8 494 59.7
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 2.8e-158 562.8 445 62.7
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 2.8e-158 562.8 519 57.8
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 3.6e-158 562.4 396 69.9
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 1.1e-157 560.8 396 69.7
Lj2A405T39 Lonicera japonica HOM05D006573 ORTHO05D008073 1.1e-157 560.8 414 68.4
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 3.1e-157 559.3 559 56.0
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 6.8e-157 558.1 426 66.0
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 8.9e-157 557.8 552 54.9
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 8.9e-157 557.8 412 67.2
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 8.9e-157 557.8 426 66.0
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 1.2e-156 557.4 485 59.2
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 1.5e-156 557.0 424 67.0
MSTRG.8177 Avicennia marina HOM05D006573 ORTHO05D008073 2.0e-156 556.6 519 57.2
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 2.6e-156 556.2 426 65.7
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 4.4e-156 555.4 426 65.7
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 7.6e-156 554.7 397 68.5
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 9.9e-156 554.3 508 58.7
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 1.3e-155 553.9 424 67.0
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 1.3e-155 553.9 519 56.3
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 2.2e-155 553.1 426 65.3
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 1.9e-154 550.1 398 67.8
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 7.1e-154 548.1 405 67.2
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 9.3e-154 547.7 397 67.0
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 2.7e-153 546.2 502 57.6
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 2.7e-153 546.2 405 67.2
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 5.1e-152 542.0 411 65.2
HPP92_020222 Vanilla planifolia HOM05D001545 ORTHO05D001600 4.3e-151 538.9 510 55.9
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 1.6e-150 537.0 398 67.1
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 2.1e-150 536.6 447 60.4
Sc09g0001730 Simmondsia chinensis HOM05D006573 ORTHO05D008073 1.8e-149 533.5 411 65.5
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 9.0e-149 531.2 396 66.9
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 1.2e-148 530.8 410 63.4
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 1.5e-148 530.4 398 66.3
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 1.6e-145 520.4 426 62.9
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 6.6e-144 515.0 429 59.4
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 7.6e-140 501.5 440 59.1
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 2.9e-139 499.6 511 53.2
Hund07152 Selenicereus undatus HOM05D006573 ORTHO05D008073 2.9e-139 499.6 408 62.0
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 6.4e-139 498.4 337 70.3
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 1.1e-138 497.7 408 62.0
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 1.1e-138 497.7 337 70.0
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 4.3e-135 485.7 421 59.1
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 7.6e-132 474.9 400 59.5
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 1.7e-131 473.8 517 50.5
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 2.2e-131 473.4 517 50.5
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 6.0e-129 465.3 406 57.9
COL.COLO4_20557 Corchorus olitorius HOM05D006573 ORTHO05D008073 7.6e-124 448.4 318 68.9
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 1.5e-119 434.1 403 55.1
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 1.4e-112 411.0 423 51.5
SMO270G0104 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.3e-112 410.2 365 56.2
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 1.7e-110 404.1 387 52.7
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 1.8e-109 400.6 312 64.4
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 3.8e-99 366.3 308 55.5
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 1.5e-98 364.4 280 62.5
Lj2C408T2 Lonicera japonica HOM05D006573 ORTHO05D008073 3.0e-96 356.7 409 51.3
unitig_46.g17980 Utricularia gibba HOM05D006573 ORTHO05D008073 6.1e-89 332.4 198 77.3
Os04g0379700 Oryza sativa ssp. japonica HOM05D006573 ORTHO05D008073 8.8e-88 328.6 278 58.6
PGSC0003DMG400010690 Solanum tuberosum HOM05D006573 ORTHO05D008073 9.4e-82 308.5 273 56.8
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 8.0e-65 252.3 371 38.8
PRCOL_00001224 Prasinoderma coloniale HOM05D006573 ORTHO05D008073 5.2e-64 249.6 341 40.2
SMO334G0031 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.2e-62 244.2 238 49.2
SMO297G0027 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.4e-61 241.5 238 48.7
SMO297G0014 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 9.2e-61 238.8 238 48.7
SMO270G0143 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.6e-60 238.0 238 47.9
PGSC0003DMG400020993 Solanum tuberosum HOM05D006573 ORTHO05D008073 7.1e-45 186.0 244 41.4
unitig_46.g17981 Utricularia gibba HOM05D006573 ORTHO05D008073 2.7e-36 157.5 141 63.1
SMO266G0012 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.4e-24 117.9 132 43.9
Haze_04503 Corylus avellana HOM05D006573 ORTHO05D008073 1.5e-15 88.6 93 61.3
QL93p0249_0008 Quercus lobata HOM05D006573 ORTHO05D008073 4.2e-13 80.5 146 36.3
Haze_04505 Corylus avellana HOM05D006573 ORTHO05D008073 1.3e-11 75.5 84 57.1
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 1.3e-09 68.9 134 26.9
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 4.8e-09 67.0 134 24.6
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 6.3e-09 66.6 160 26.2
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 6.3e-09 66.6 134 26.1
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 8.2e-09 66.2 160 26.2
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 8.2e-09 66.2 134 25.4
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 1.1e-08 65.9 158 27.2
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 1.1e-08 65.9 136 26.5
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 1.1e-08 65.9 136 26.5
Os01g0716400 Oryza sativa ssp. japonica HOM05D006367 ORTHO05D007942 2.4e-08 64.7 134 24.6
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 3.1e-08 64.3 136 26.5
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 3.1e-08 64.3 136 26.5
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 3.1e-08 64.3 136 26.5
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 6.9e-08 63.2 134 26.9
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 9.0e-08 62.8 136 26.5
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 9.0e-08 62.8 132 26.5
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 1.2e-07 62.4 136 25.0
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 1.5e-07 62.0 136 25.7
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 2.0e-07 61.6 134 26.1
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 2.0e-07 61.6 134 26.1
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 2.6e-07 61.2 134 23.9
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 2.6e-07 61.2 134 25.4
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 2.6e-07 61.2 134 24.6
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 2.6e-07 61.2 134 25.4
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 3.4e-07 60.8 136 24.3
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 3.4e-07 60.8 136 25.0
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 3.4e-07 60.8 136 25.0
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 7.6e-07 59.7 194 23.2
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 1.3e-06 58.9 189 23.3
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 2.2e-06 58.2 176 21.6
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 3.8e-06 57.4 197 23.9


User provided reference genes

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