Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 0.0e+00 1528.5 780 100.0
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 1.8e-201 706.8 844 50.6
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 3.3e-187 659.4 813 49.6
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.0e-183 647.9 845 47.8
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.6e-181 640.6 786 49.4
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 1.1e-174 617.8 816 47.7
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.6e-173 614.0 853 46.1
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 3.1e-169 599.7 826 46.4
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 1.5e-168 597.4 778 46.8
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 1.9e-166 590.5 908 41.7
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 4.7e-165 585.9 775 46.5
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 5.7e-155 552.4 820 41.7
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 1.3e-154 551.2 821 41.8
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 4.1e-153 546.2 814 42.0
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 8.5e-151 538.5 837 43.0
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.5e-150 537.7 764 45.3
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 2.1e-149 533.9 813 43.1
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 6.7e-148 528.9 844 41.8
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 9.7e-147 525.0 810 41.7
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 2.2e-146 523.9 799 40.4
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 6.3e-146 522.3 815 40.9
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 5.9e-144 515.8 821 39.8
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 7.7e-144 515.4 786 43.4
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 1.0e-143 515.0 813 40.2
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 1.3e-143 514.6 801 40.0
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 1.7e-143 514.2 825 39.9
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.2e-143 513.8 858 40.2
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 8.5e-143 511.9 797 42.2
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 1.1e-142 511.5 842 41.0
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.1e-142 511.5 800 40.8
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 9.4e-142 508.4 775 41.7
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 2.1e-141 507.3 841 40.3
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 6.1e-141 505.8 788 41.1
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 8.0e-141 505.4 838 39.9
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 4.0e-140 503.1 839 41.0
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 8.8e-140 501.9 868 39.7
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 1.3e-138 498.0 857 39.8
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 5.4e-137 492.7 834 38.7
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 7.0e-137 492.3 834 38.7
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 2.0e-136 490.7 821 40.6
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 1.7e-135 487.6 853 38.9
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 3.8e-135 486.5 833 40.1
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 2.5e-134 483.8 789 40.7
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 1.2e-133 481.5 833 39.1
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 2.8e-133 480.3 785 39.5
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 4.7e-133 479.6 810 39.5
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 2.8e-130 470.3 812 38.5
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 2.4e-129 467.2 812 39.4
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 1.2e-128 464.9 841 37.0
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.6e-128 464.5 794 40.4
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 1.6e-128 464.5 816 38.5
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 3.5e-128 463.4 821 38.2
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 7.8e-128 462.2 942 36.0
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 1.0e-127 461.8 858 37.6
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 1.3e-127 461.5 804 38.8
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 2.3e-127 460.7 824 38.0
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 6.6e-127 459.1 1021 34.3
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 1.9e-126 457.6 828 39.7
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 1.6e-125 454.5 846 38.7
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 2.1e-125 454.1 860 38.0
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 8.0e-125 452.2 861 36.9
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 8.0e-125 452.2 837 38.5
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 3.1e-124 450.3 968 33.8
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 4.0e-124 449.9 809 38.8
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 1.5e-123 448.0 793 37.5
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 1.5e-123 448.0 996 33.4
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 2.0e-123 447.6 705 44.1
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 5.8e-123 446.0 777 38.9
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 2.4e-121 440.7 807 37.1
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 5.4e-121 439.5 933 35.6
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 9.2e-121 438.7 798 38.8
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 2.7e-120 437.2 854 36.7
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 4.6e-120 436.4 829 37.8
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 2.3e-119 434.1 806 37.0
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 5.6e-118 429.5 766 37.5
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 4.7e-117 426.4 867 36.2
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 8.9e-116 422.2 828 33.9
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 2.6e-115 420.6 770 35.8
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 4.9e-114 416.4 829 33.7
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 1.4e-113 414.8 721 40.2
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 2.4e-113 414.1 741 36.8
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 1.5e-110 404.8 790 34.8
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 5.6e-110 402.9 808 34.7
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 4.7e-109 399.8 916 33.4
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 3.1e-108 397.1 800 35.0
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 4.0e-108 396.7 982 33.0
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 5.8e-107 392.9 788 34.9
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 3.2e-105 387.1 807 35.6
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 7.1e-105 386.0 807 34.2
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 3.3e-102 377.1 786 34.0
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.4e-100 370.9 492 42.3
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 7.8e-96 355.9 849 33.6
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 1.7e-95 354.8 788 32.7
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 2.3e-95 354.4 666 35.7
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 2.8e-93 347.4 736 35.2
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.8e-84 318.2 493 44.2
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 3.4e-83 313.9 480 37.9
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.0e-79 302.4 450 43.6
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 8.1e-77 292.7 569 37.1
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 2.7e-72 277.7 714 32.6
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 3.5e-72 277.3 615 35.9
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 4.3e-70 270.4 852 28.8
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 1.4e-68 265.4 704 30.8
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 8.4e-66 256.1 558 34.6
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 7.1e-65 253.1 760 29.2
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 2.1e-64 251.5 455 36.9
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 7.9e-64 249.6 476 35.7
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 2.3e-63 248.1 499 35.5
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 5.1e-63 246.9 545 35.0
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 1.5e-62 245.4 483 37.3
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 5.7e-62 243.4 434 37.1
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.6e-61 241.9 465 34.8
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 1.6e-61 241.9 464 35.1
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 2.8e-61 241.1 468 35.5
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 4.1e-60 237.3 438 36.1
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 9.0e-60 236.1 483 34.0
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 2.0e-59 235.0 451 37.0
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 4.5e-59 233.8 811 28.7
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 3.8e-58 230.7 645 32.2
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 5.0e-58 230.3 351 38.2
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 3.2e-57 227.6 447 37.1
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 3.2e-57 227.6 486 34.8
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 9.4e-57 226.1 434 36.2
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 9.4e-57 226.1 434 36.2
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.1e-56 224.9 790 29.9
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 6.1e-56 223.4 820 26.7
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 6.7e-55 219.9 476 31.7
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 6.7e-55 219.9 470 33.0
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.5e-54 218.8 840 26.3
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 3.3e-54 217.6 472 32.4
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 1.7e-53 215.3 551 32.3
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 3.7e-53 214.2 618 31.6
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 4.8e-53 213.8 535 32.5
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 8.2e-53 213.0 460 34.3
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.1e-52 212.6 446 36.5
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 1.4e-52 212.2 618 31.4
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 1.9e-49 201.8 536 33.0
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 2.7e-48 198.0 476 30.5
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 4.7e-48 197.2 438 37.9
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.3e-42 179.1 442 30.8
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 5.0e-42 177.2 611 28.8
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 1.4e-39 169.1 286 43.7
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 2.3e-39 168.3 600 28.2
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 5.2e-39 167.2 814 22.7
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 1.8e-36 158.7 445 27.4
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 2.4e-36 158.3 105 63.8
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 3.1e-36 157.9 285 38.6
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 2.3e-31 141.7 103 57.3
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.3e-29 136.0 135 55.6
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.9e-25 122.1 193 42.0
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 3.2e-25 121.3 199 34.2
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 2.7e-24 118.2 201 40.3
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 5.2e-23 114.0 352 25.6
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 1.8e-20 105.5 377 31.0
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 7.0e-12 77.0 72 41.7
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 7.8e-11 73.6 83 44.6
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 5.6e-09 67.4 69 42.0
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.2e-08 66.2 217 24.9
Oeu005515.1 Olea europaea HOM05D004295 ORTHO05D004901 1.6e-08 65.9 59 52.5
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.6e-08 65.9 52 55.8
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 6.2e-08 63.9 50 64.0
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 4.4e-06 57.8 159 25.2
MCO08G197 Micromonas commoda HOM05D004447 ORTHO05D005973 4.4e-06 57.8 62 41.9
Os01g0883400 Oryza sativa ssp. japonica HOM05D004258 ORTHO05D005163 4.4e-06 57.8 51 43.1
BcaB05g24188 Brassica carinata HOM05D004295 ORTHO05D004901 7.5e-06 57.0 48 54.2


User provided reference genes

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