Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013188 Daucus carota HOM05D001174 ORTHO05D001003 2.5e-59 231.9 114 100.0
DCAR_013187 Daucus carota HOM05D001174 ORTHO05D001003 1.2e-56 223.0 109 100.0
ECA240G2300 Erigeron canadensis HOM05D001174 ORTHO05D001003 2.1e-37 159.1 116 68.1
Dinv26829 Davidia involucrata HOM05D001174 ORTHO05D001003 2.7e-37 158.7 111 72.1
Lsat_1_v5_gn_3_120241 Lactuca sativa HOM05D001174 ORTHO05D001003 2.7e-37 158.7 113 69.9
FAN19G1419 Fragaria x ananassa HOM05D001174 ORTHO05D001003 1.7e-36 156.0 115 65.2
CSS0035790 Camellia sinensis var. sinensis HOM05D001174 ORTHO05D001003 2.3e-36 155.6 112 71.4
FAN26G0168 Fragaria x ananassa HOM05D001174 ORTHO05D001003 2.3e-36 155.6 115 65.2
FAN28G1665 Fragaria x ananassa HOM05D001174 ORTHO05D001003 2.3e-36 155.6 115 65.2
FAN23G0797 Fragaria x ananassa HOM05D001174 ORTHO05D001003 5.1e-36 154.5 115 65.2
Solyc04g007270.3 Solanum lycopersicum HOM05D001174 ORTHO05D001003 5.1e-36 154.5 111 66.7
Manes.13G153700 Manihot esculenta HOM05D001174 ORTHO05D001003 1.1e-35 153.3 109 69.7
Actinidia12241 Actinidia chinensis HOM05D001174 ORTHO05D001003 1.9e-35 152.5 110 70.0
Peaxi162Scf00577g00006 Petunia axillaris HOM05D001174 ORTHO05D001003 2.5e-35 152.1 109 69.7
Ciclev10025026m.g Citrus clementina HOM05D001174 ORTHO05D001003 3.3e-35 151.8 113 69.0
MD15G1141000 Malus domestica HOM05D001174 ORTHO05D001003 3.3e-35 151.8 110 70.9
Prupe.4G288800 Prunus persica HOM05D001174 ORTHO05D001003 4.3e-35 151.4 114 66.7
Sopen04g002330 Solanum pennellii HOM05D001174 ORTHO05D001003 5.6e-35 151.0 110 67.3
Cpa.g.sc138.43 Carica papaya HOM05D001174 ORTHO05D001003 1.6e-34 149.4 114 69.3
Peaxi162Scf00003g02037 Petunia axillaris HOM05D001174 ORTHO05D001003 1.6e-34 149.4 109 69.7
CAN.G7.10 Capsicum annuum HOM05D001174 ORTHO05D001003 3.6e-34 148.3 109 66.1
RcHm_v2.0_Chr3g0485271 Rosa chinensis HOM05D001174 ORTHO05D001003 3.6e-34 148.3 118 64.4
PGSC0003DMG400006006 Solanum tuberosum HOM05D001174 ORTHO05D001003 3.6e-34 148.3 113 66.4
Cc00_g27260 Coffea canephora HOM05D001174 ORTHO05D001003 6.2e-34 147.5 119 64.7
Nitab4.5_0002209g0010 Nicotiana tabacum HOM05D001174 ORTHO05D001003 6.2e-34 147.5 113 68.1
Nitab4.5_0003104g0040 Nicotiana tabacum HOM05D001174 ORTHO05D001003 1.1e-33 146.7 111 66.7
HanXRQChr13g0422081 Helianthus annuus HOM05D001174 ORTHO05D001003 1.8e-33 146.0 109 67.0
TWI79G0263 Tripterygium wilfordii HOM05D001174 ORTHO05D001003 1.8e-33 146.0 109 65.1
GSVIVG01000247001 Vitis vinifera HOM05D001174 ORTHO05D001003 2.3e-33 145.6 109 65.1
HanXRQChr03g0091961 Helianthus annuus HOM05D001174 ORTHO05D001003 1.2e-32 143.3 109 65.1
Oeu054206.1 Olea europaea HOM05D001174 ORTHO05D001003 1.2e-32 143.3 110 66.4
vmacro18689 Vaccinium macrocarpon HOM05D001174 ORTHO05D001003 1.2e-32 143.3 113 68.1
Atru.chr3.1455 Acer truncatum HOM05D001174 ORTHO05D001003 2.6e-32 142.1 110 66.4
EL10Ac4g09733 Beta vulgaris HOM05D001174 ORTHO05D001003 4.4e-32 141.4 112 64.3
QL10p037912 Quercus lobata HOM05D001174 ORTHO05D001003 7.6e-32 140.6 115 64.3
Ca_09902_v3 Cicer arietinum L. HOM05D001174 ORTHO05D001003 9.9e-32 140.2 115 62.6
TWI31G0341 Tripterygium wilfordii HOM05D001174 ORTHO05D001003 9.9e-32 140.2 109 67.0
Cfa020921 Carpinus fangiana HOM05D001174 ORTHO05D001003 1.3e-31 139.8 116 65.5
AUR62006960 Chenopodium quinoa HOM05D001174 ORTHO05D001003 1.3e-31 139.8 112 63.4
Migut.H02544 Erythranthe guttata HOM05D001174 ORTHO05D001003 1.3e-31 139.8 114 66.7
Medtr1g076990 Medicago truncatula HOM05D001174 ORTHO05D001003 1.3e-31 139.8 114 62.3
PGR119G0702 Punica granatum HOM05D001174 ORTHO05D001003 2.2e-31 139.0 113 61.9
Thecc.01G146300 Theobroma cacao HOM05D001174 ORTHO05D001003 2.9e-31 138.7 111 61.3
SGA_v2.0_scaffold12G06273 Striga asiatica HOM05D001174 ORTHO05D001003 3.8e-31 138.3 115 65.2
Psat4g172080 Pisum sativum HOM05D001174 ORTHO05D001003 6.4e-31 137.5 114 60.5
Potri.004G134700 Populus trichocarpa HOM05D001174 ORTHO05D001003 6.4e-31 137.5 123 57.7
AUR62000609 Chenopodium quinoa HOM05D001174 ORTHO05D001003 8.4e-31 137.1 112 61.6
arahy.Tifrunner.gnm1.ann1.LCQF6T Arachis hypogaea HOM05D001174 ORTHO05D001003 1.4e-30 136.3 115 60.0
arahy.Tifrunner.gnm1.ann1.TP2IXW Arachis hypogaea HOM05D001174 ORTHO05D001003 1.4e-30 136.3 115 60.0
Duzib147G0032 Durio zibethinus HOM05D001174 ORTHO05D001003 1.4e-30 136.3 111 62.2
Sabra19G0000300 Salix brachista HOM05D001174 ORTHO05D001003 1.4e-30 136.3 118 58.5
Sabra19G0012500 Salix brachista HOM05D001174 ORTHO05D001003 1.4e-30 136.3 118 58.5
CiPaw.16G119600 Carya illinoinensis HOM05D001174 ORTHO05D001003 1.9e-30 136.0 122 61.5
Lj5g0023059 Lotus japonicus HOM05D001174 ORTHO05D001003 1.9e-30 136.0 114 60.5
TPR.G16615 Trifolium pratense HOM05D001174 ORTHO05D001003 1.9e-30 136.0 112 60.7
TAR381G0430 Trochodendron aralioides HOM05D001174 ORTHO05D001003 2.4e-30 135.6 115 61.7
Ah.02g118200 Amaranthus hybridus HOM05D001174 ORTHO05D001003 4.1e-30 134.8 112 64.3
Haze_19356 Corylus avellana HOM05D001174 ORTHO05D001003 4.1e-30 134.8 116 64.7
MSTRG.23235 Avicennia marina HOM05D001174 ORTHO05D001003 5.4e-30 134.4 115 66.1
Lalb_Chr06g0168761 Lupinus albus HOM05D001174 ORTHO05D001003 7.1e-30 134.0 114 59.6
MBI03_g39996_MAGBIO Magnolia biondii HOM05D001174 ORTHO05D001003 9.2e-30 133.7 113 59.3
Potri.T045600 Populus trichocarpa HOM05D001174 ORTHO05D001003 1.6e-29 132.9 117 58.1
SGA_v2.0_scaffold51G18843 Striga asiatica HOM05D001174 ORTHO05D001003 1.6e-29 132.9 115 62.6
Eucgr.I00019 Eucalyptus grandis HOM05D001174 ORTHO05D001003 2.7e-29 132.1 111 61.3
Oeu046361.1 Olea europaea HOM05D001174 ORTHO05D001003 3.5e-29 131.7 116 62.1
Sabra04G0083300 Salix brachista HOM05D001174 ORTHO05D001003 4.6e-29 131.3 112 60.7
Sc06g0005280 Simmondsia chinensis HOM05D001174 ORTHO05D001003 6.0e-29 131.0 113 60.2
COL.COLO4_35284 Corchorus olitorius HOM05D001174 ORTHO05D001003 1.3e-28 129.8 105 63.8
Aqoxy6G00024 Aquilegia oxysepala HOM05D001174 ORTHO05D001003 2.3e-28 129.0 118 55.1
Glyma.10G176200 Glycine max HOM05D001174 ORTHO05D001003 2.3e-28 129.0 115 60.0
Glyma.20G214100 Glycine max HOM05D001174 ORTHO05D001003 2.3e-28 129.0 115 60.0
CANSAT78G2060 Cannabis sativa HOM05D001174 ORTHO05D001003 3.0e-28 128.6 111 63.1
Gohir.A10G158722 Gossypium hirsutum HOM05D001174 ORTHO05D001003 6.6e-28 127.5 113 61.1
TPR.G5813 Trifolium pratense HOM05D001174 ORTHO05D001003 1.1e-27 126.7 111 59.5
Gohir.D10G109800 Gossypium hirsutum HOM05D001174 ORTHO05D001003 2.5e-27 125.6 113 59.3
Gorai.011G120900 Gossypium raimondii HOM05D001174 ORTHO05D001003 2.5e-27 125.6 113 59.3
Lj4C822T3 Lonicera japonica HOM05D001174 ORTHO05D001003 2.5e-27 125.6 100 64.0
Lalb_Chr02g0149801 Lupinus albus HOM05D001174 ORTHO05D001003 2.5e-27 125.6 112 57.1
Dinv22066 Davidia involucrata HOM05D001174 ORTHO05D001003 3.3e-27 125.2 110 59.1
PSO210G1502 Papaver somniferum HOM05D001174 ORTHO05D001003 5.6e-27 124.4 114 56.1
Phvul.007G114100 Phaseolus vulgaris HOM05D001174 ORTHO05D001003 7.3e-27 124.0 115 57.4
PSO761G0025 Papaver somniferum HOM05D001174 ORTHO05D001003 1.2e-26 123.2 114 56.1
arahy.Tifrunner.gnm1.ann1.F4SVGY Arachis hypogaea HOM05D001174 ORTHO05D001003 2.1e-26 122.5 113 61.1
arahy.Tifrunner.gnm1.ann1.NM7VB5 Arachis hypogaea HOM05D001174 ORTHO05D001003 3.6e-26 121.7 113 61.1
Phvul.011G004000 Phaseolus vulgaris HOM05D001174 ORTHO05D001003 3.6e-26 121.7 113 61.9
HPP92_001195 Vanilla planifolia HOM05D001174 ORTHO05D001003 6.2e-26 120.9 126 53.2
MELO3C003278.2 Cucumis melo HOM05D001174 ORTHO05D001003 1.1e-25 120.2 123 54.5
Ca_00234_v3 Cicer arietinum L. HOM05D001174 ORTHO05D001003 1.4e-25 119.8 114 60.5
CsaV3_4G029980 Cucumis sativus L. HOM05D001174 ORTHO05D001003 1.4e-25 119.8 125 53.6
Lj3g0008343 Lotus japonicus HOM05D001174 ORTHO05D001003 2.4e-25 119.0 114 60.5
Glyma.09G233500 Glycine max HOM05D001174 ORTHO05D001003 5.2e-25 117.9 113 61.9
VMungo1127G0395 Vigna mungo HOM05D001174 ORTHO05D001003 6.9e-25 117.5 113 60.2
TPR.G15121 Trifolium pratense HOM05D001174 ORTHO05D001003 1.2e-24 116.7 113 60.2
Glyma.12G003300 Glycine max HOM05D001174 ORTHO05D001003 1.5e-24 116.3 113 60.2
SHI16846 Sapria himalayana HOM05D001174 ORTHO05D001003 1.1e-22 110.2 115 56.5
CDE05G0825 Ceratophyllum demersum HOM05D001174 ORTHO05D001003 1.4e-22 109.8 119 52.1
Medtr4g035550 Medicago truncatula HOM05D001174 ORTHO05D001003 2.4e-22 109.0 113 53.1
Prupe.8G002100 Prunus persica HOM05D001174 ORTHO05D001003 1.2e-21 106.7 113 55.8
Haze_14016 Corylus avellana HOM05D001174 ORTHO05D001003 2.1e-21 105.9 120 52.5
PGR102G2196 Punica granatum HOM05D001174 ORTHO05D001003 4.6e-21 104.8 112 52.7
GSVIVG01037120001 Vitis vinifera HOM05D001174 ORTHO05D001003 4.6e-21 104.8 116 52.6
Ca_25248_v3 Cicer arietinum L. HOM05D001174 ORTHO05D001003 1.7e-20 102.8 112 55.4
SHI38347 Sapria himalayana HOM05D001174 ORTHO05D001003 1.7e-20 102.8 111 51.4
MD05G1001000 Malus domestica HOM05D001174 ORTHO05D001003 2.3e-20 102.4 115 53.9
Lalb_Chr15g0079801 Lupinus albus HOM05D001174 ORTHO05D001003 3.9e-20 101.7 115 51.3
Psat1g113200 Pisum sativum HOM05D001174 ORTHO05D001003 3.9e-20 101.7 105 53.3
Manes.17G016200 Manihot esculenta HOM05D001174 ORTHO05D001003 1.9e-19 99.4 116 53.4
HanXRQChr10g0295191 Helianthus annuus HOM05D000712 ORTHO05D013991 3.3e-19 98.6 86 59.3
THA.LOC104813080 Tarenaya hassleriana HOM05D001174 ORTHO05D001003 3.3e-19 98.6 120 52.5
Cfa021493 Carpinus fangiana HOM05D001174 ORTHO05D001003 4.3e-19 98.2 120 50.0
Potri.013G092000 Populus trichocarpa HOM05D001174 ORTHO05D001003 1.6e-18 96.3 109 50.5
CDE05G3524 Ceratophyllum demersum HOM05D001174 ORTHO05D001003 2.1e-18 95.9 107 49.5
Eucgr.F04095 Eucalyptus grandis HOM05D001174 ORTHO05D001003 2.1e-18 95.9 110 50.0
FAN20G2593 Fragaria x ananassa HOM05D001174 ORTHO05D001003 2.1e-18 95.9 113 51.3
FAN24G1382 Fragaria x ananassa HOM05D001174 ORTHO05D001003 4.8e-18 94.7 113 51.3
AL1G47810 Arabidopsis lyrata HOM05D001174 ORTHO05D001003 8.1e-18 94.0 115 51.3
Lj7C415T12 Lonicera japonica HOM05D001174 ORTHO05D001003 8.1e-18 94.0 116 52.6
Zm00001eb366330 Zea mays HOM05D001174 ORTHO05D001003 8.1e-18 94.0 118 50.0
Os01g0877500 Oryza sativa ssp. japonica HOM05D001174 ORTHO05D001003 1.8e-17 92.8 118 48.3
Thecc.08G166500 Theobroma cacao HOM05D001174 ORTHO05D001003 1.8e-17 92.8 114 51.8
FAN19G2507 Fragaria x ananassa HOM05D001174 ORTHO05D001003 2.4e-17 92.4 115 49.6
FvH4_2g00220 Fragaria vesca HOM05D001174 ORTHO05D001003 3.1e-17 92.0 113 50.4
AT1G33420 Arabidopsis thaliana HOM05D001174 ORTHO05D001003 5.3e-17 91.3 115 50.4
Cpa.g.sc249.16 Carica papaya HOM05D001174 ORTHO05D001003 6.9e-17 90.9 117 49.6
CARHR032870 Cardamine hirsuta HOM05D001174 ORTHO05D001003 9.0e-17 90.5 116 49.1
Aa31LG9G11790 Aethionema arabicum HOM05D001174 ORTHO05D001003 1.2e-16 90.1 114 48.2
Thhalv10006958m.g Eutrema salsugineum HOM05D001174 ORTHO05D001003 1.2e-16 90.1 114 50.9
RcHm_v2.0_Chr6g0249511 Rosa chinensis HOM05D001174 ORTHO05D001003 1.2e-16 90.1 113 48.7
Carub.0001s3162 Capsella rubella HOM05D001174 ORTHO05D001003 2.0e-16 89.4 120 46.7
Sp1g28880 Schrenkiella parvula HOM05D001174 ORTHO05D001003 9.9e-16 87.0 115 51.3
Duzib177G1126 Durio zibethinus HOM05D001174 ORTHO05D001003 2.9e-15 85.5 114 51.8
Sabra13G0072500 Salix brachista HOM05D001174 ORTHO05D001003 8.4e-15 84.0 105 46.7
ATR1089G105 Amborella trichopoda HOM05D001174 ORTHO05D001003 1.9e-14 82.8 113 43.4
Gohir.A08G231000 Gossypium hirsutum HOM05D001174 ORTHO05D001003 2.4e-14 82.4 116 50.0
Gorai.004G268100 Gossypium raimondii HOM05D001174 ORTHO05D001003 1.6e-13 79.7 116 49.1
Gohir.D08G251400 Gossypium hirsutum HOM05D001174 ORTHO05D001003 2.1e-13 79.3 116 48.3
MD10G1001300 Malus domestica HOM05D001174 ORTHO05D001003 2.1e-13 79.3 116 46.6
unitig_736.g22366 Utricularia gibba HOM05D001174 ORTHO05D001003 8.7e-12 73.9 110 45.5
QL09p001115 Quercus lobata HOM05D001174 ORTHO05D001003 3.6e-10 68.6 125 39.2
FAN20G0517 Fragaria x ananassa HOM05D001174 ORTHO05D001003 8.1e-10 67.4 110 40.9
ECA246G4811 Erigeron canadensis HOM05D000330 ORTHO05D000209 1.9e-06 56.2 35 82.9


User provided reference genes

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