Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_012957 Daucus carota HOM05D001891 ORTHO05D005832 6.4e-148 527.3 254 100.0
Actinidia12502 Actinidia chinensis HOM05D001891 ORTHO05D005832 6.1e-82 308.1 256 61.7
Dinv39687 Davidia involucrata HOM05D001891 ORTHO05D005832 3.3e-80 302.4 256 60.9
Cfa014439 Carpinus fangiana HOM05D001891 ORTHO05D005832 1.7e-79 300.1 254 58.7
CSS0020073 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D005832 2.8e-79 299.3 256 59.8
Solyc07g052570.4 Solanum lycopersicum HOM05D001891 ORTHO05D005832 1.7e-76 290.0 256 59.8
ClCG02G008450 Citrullus lanatus HOM05D001891 ORTHO05D005832 2.2e-76 289.7 254 56.3
Haze_12897 Corylus avellana HOM05D001891 ORTHO05D005832 2.2e-76 289.7 261 57.1
QL08p033823 Quercus lobata HOM05D001891 ORTHO05D005832 2.9e-76 289.3 255 57.3
CsaV3_2G035180 Cucumis sativus L. HOM05D001891 ORTHO05D005832 5.5e-75 285.0 254 55.1
EL10Ac7g17313 Beta vulgaris HOM05D001891 ORTHO05D005832 7.2e-75 284.6 256 57.8
Ciclev10015025m.g Citrus clementina HOM05D001891 ORTHO05D005832 9.4e-75 284.3 256 58.2
Eucgr.K00860 Eucalyptus grandis HOM05D001891 ORTHO05D005832 9.4e-75 284.3 255 54.5
MELO3C019236.2 Cucumis melo HOM05D001891 ORTHO05D005832 2.1e-74 283.1 254 54.7
Sopen07g026180 Solanum pennellii HOM05D001891 ORTHO05D005832 3.6e-74 282.3 273 56.0
Rhsim06G0158100 Rhododendron simsii HOM05D001891 ORTHO05D005832 4.7e-74 282.0 228 62.7
Aqoxy4G02100 Aquilegia oxysepala HOM05D001891 ORTHO05D005832 6.1e-74 281.6 253 53.8
GSVIVG01030624001 Vitis vinifera HOM05D001891 ORTHO05D005832 1.0e-73 280.8 256 57.0
TAR624G1196 Trochodendron aralioides HOM05D001891 ORTHO05D005832 5.2e-73 278.5 238 61.8
CiPaw.03G162900 Carya illinoinensis HOM05D001891 ORTHO05D005832 6.8e-73 278.1 256 55.5
PSO541G2722 Papaver somniferum HOM05D001891 ORTHO05D005832 8.8e-73 277.7 255 53.7
Nn1g03668 Nelumbo nucifera HOM05D001891 ORTHO05D005832 1.5e-72 276.9 254 55.9
Manes.13G073100 Manihot esculenta HOM05D001891 ORTHO05D005832 4.4e-72 275.4 256 54.3
PGR142G2396 Punica granatum HOM05D001891 ORTHO05D005832 4.4e-72 275.4 256 53.5
Eucgr.K00822 Eucalyptus grandis HOM05D001891 ORTHO05D005832 5.7e-72 275.0 255 53.7
Atru.chr6.3148 Acer truncatum HOM05D001891 ORTHO05D005832 6.3e-71 271.6 253 56.1
Thecc.02G162300 Theobroma cacao HOM05D001891 ORTHO05D005832 4.1e-70 268.9 256 53.9
TWI18G0733 Tripterygium wilfordii HOM05D001891 ORTHO05D005832 5.4e-70 268.5 256 54.7
MBI18_g19140_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 1.6e-69 266.9 264 52.3
TPR.G4158 Trifolium pratense HOM05D001891 ORTHO05D005832 1.6e-69 266.9 256 52.7
MBI18_g07895_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 5.9e-69 265.0 264 52.3
COL.COLO4_12984 Corchorus olitorius HOM05D001891 ORTHO05D005832 7.7e-69 264.6 254 54.3
Eucgr.K00839 Eucalyptus grandis HOM05D001891 ORTHO05D005832 1.3e-68 263.8 228 55.7
MD09G1105100 Malus domestica HOM05D001891 ORTHO05D005832 1.1e-67 260.8 256 51.6
Medtr2g088820 Medicago truncatula HOM05D001891 ORTHO05D005832 1.1e-67 260.8 253 53.0
arahy.Tifrunner.gnm1.ann1.XAPR04 Arachis hypogaea HOM05D001891 ORTHO05D005832 4.2e-67 258.8 253 53.0
CDE01G0775 Ceratophyllum demersum HOM05D001891 ORTHO05D005832 4.2e-67 258.8 257 50.6
Psat5g265280 Pisum sativum HOM05D001891 ORTHO05D005832 4.2e-67 258.8 254 53.1
Migut.M00395 Erythranthe guttata HOM05D001891 ORTHO05D005832 7.2e-67 258.1 252 52.0
Peaxi162Scf00007g01229 Petunia axillaris HOM05D001891 ORTHO05D005832 7.2e-67 258.1 288 50.7
Phvul.005G113700 Phaseolus vulgaris HOM05D001891 ORTHO05D005832 1.6e-66 256.9 255 52.5
SGA_v2.0_scaffold70G23419 Striga asiatica HOM05D001891 ORTHO05D005832 1.6e-66 256.9 250 52.8
Glyma.12G195700 Glycine max HOM05D001891 ORTHO05D005832 2.7e-66 256.1 255 51.4
MBI18_g23508_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 6.1e-66 255.0 263 51.7
THA.LOC104821752 Tarenaya hassleriana HOM05D001891 ORTHO05D005832 1.0e-65 254.2 254 51.6
RcHm_v2.0_Chr2g0160071 Rosa chinensis HOM05D001891 ORTHO05D005832 1.4e-65 253.8 257 51.4
ECA238G0562 Erigeron canadensis HOM05D001891 ORTHO05D005832 1.8e-65 253.4 251 54.6
Duzib052G0092 Durio zibethinus HOM05D001891 ORTHO05D005832 3.0e-65 252.7 254 52.8
arahy.Tifrunner.gnm1.ann1.IG5XIH Arachis hypogaea HOM05D001891 ORTHO05D005832 4.0e-65 252.3 253 52.2
Sc12g0002380 Simmondsia chinensis HOM05D001891 ORTHO05D005832 4.0e-65 252.3 253 52.2
VMungo1080G1248 Vigna mungo HOM05D001891 ORTHO05D005832 4.0e-65 252.3 255 51.0
CANSAT64G2761 Cannabis sativa HOM05D001891 ORTHO05D005832 8.8e-65 251.1 242 54.5
Potri.017G038700 Populus trichocarpa HOM05D001891 ORTHO05D005832 1.2e-64 250.8 254 50.0
SalBow7G4184 Salvia bowleyana HOM05D001891 ORTHO05D005832 1.5e-64 250.4 249 51.0
Ah.15g093450 Amaranthus hybridus HOM05D001891 ORTHO05D005832 2.0e-64 250.0 256 52.0
Gorai.002G016300 Gossypium raimondii HOM05D001891 ORTHO05D005832 4.4e-64 248.8 254 51.6
Lalb_Chr24g0393071 Lupinus albus HOM05D001891 ORTHO05D005832 1.3e-63 247.3 251 51.8
Gohir.A01G013300 Gossypium hirsutum HOM05D001891 ORTHO05D005832 3.7e-63 245.7 254 51.2
Oeu041941.2 Olea europaea HOM05D001891 ORTHO05D005832 6.3e-63 245.0 241 51.5
Gohir.D01G014600 Gossypium hirsutum HOM05D001891 ORTHO05D005832 8.3e-63 244.6 254 51.2
Sp3g19820 Schrenkiella parvula HOM05D001891 ORTHO05D005832 8.3e-63 244.6 254 50.4
Lj3g0012140 Lotus japonicus HOM05D001891 ORTHO05D005832 1.1e-62 244.2 255 50.2
Carub.0003s2190 Capsella rubella HOM05D001891 ORTHO05D005832 1.4e-62 243.8 254 50.0
Prupe.3G220400 Prunus persica HOM05D001891 ORTHO05D005832 1.4e-62 243.8 256 49.6
Cc05_g05050 Coffea canephora HOM05D001891 ORTHO05D005832 1.8e-62 243.4 256 50.4
Thhalv10020639m.g Eutrema salsugineum HOM05D001891 ORTHO05D005832 4.1e-62 242.3 241 51.9
Sabra17G0025700 Salix brachista HOM05D001891 ORTHO05D005832 7.0e-62 241.5 254 49.6
FAN09G1075 Fragaria x ananassa HOM05D001891 ORTHO05D005832 9.2e-62 241.1 254 50.0
Eucgr.K00818 Eucalyptus grandis HOM05D001891 ORTHO05D005832 1.2e-61 240.7 255 49.4
vmacro12227 Vaccinium macrocarpon HOM05D001891 ORTHO05D005832 1.2e-61 240.7 203 60.1
FAN05G1073 Fragaria x ananassa HOM05D001891 ORTHO05D005832 2.7e-61 239.6 258 49.2
AL3G35970 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 4.5e-61 238.8 254 50.4
AL3G35980 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 4.5e-61 238.8 254 50.4
Aa31LG8G8410 Aethionema arabicum HOM05D001891 ORTHO05D005832 1.7e-60 236.9 254 49.6
AT3G21820 Arabidopsis thaliana HOM05D001891 ORTHO05D005832 8.6e-60 234.6 254 48.0
CARHR097810 Cardamine hirsuta HOM05D001891 ORTHO05D005832 1.1e-59 234.2 248 48.4
HanXRQChr10g0297501 Helianthus annuus HOM05D001891 ORTHO05D005832 3.3e-59 232.6 254 49.6
ATR0804G013 Amborella trichopoda HOM05D001891 ORTHO05D005832 5.6e-59 231.9 249 50.2
C05p41560 Brassica napus HOM05D001891 ORTHO05D005832 4.7e-58 228.8 257 47.1
BolC5t32893H Brassica oleracea HOM05D001891 ORTHO05D005832 4.7e-58 228.8 257 47.1
Glyma.13G306800 Glycine max HOM05D001891 ORTHO05D005832 4.7e-58 228.8 223 51.6
AUR62040522 Chenopodium quinoa HOM05D001891 ORTHO05D005832 8.9e-57 224.6 203 56.7
BcaC05g28122 Brassica carinata HOM05D001891 ORTHO05D005832 3.4e-56 222.6 255 45.5
CAN.G921.8 Capsicum annuum HOM05D001891 ORTHO05D005832 7.5e-56 221.5 210 55.2
FAN02G0497 Fragaria x ananassa HOM05D001891 ORTHO05D005832 1.3e-55 220.7 283 44.2
Os04g0629100 Oryza sativa ssp. japonica HOM05D001891 ORTHO05D005832 1.3e-55 220.7 257 45.9
A05p26920 Brassica napus HOM05D001891 ORTHO05D005832 2.9e-55 219.5 227 50.2
BraA05t21572Z Brassica rapa HOM05D001891 ORTHO05D005832 2.9e-55 219.5 227 50.2
Zm00001eb069580 Zea mays HOM05D001891 ORTHO05D005832 6.4e-55 218.4 250 46.0
unitig_26.g9659 Utricularia gibba HOM05D001891 ORTHO05D005832 5.4e-54 215.3 248 47.2
Nitab4.5_0001176g0150 Nicotiana tabacum HOM05D001891 ORTHO05D005832 8.6e-52 208.0 202 55.4
BcaB06g26287 Brassica carinata HOM05D001891 ORTHO05D005832 2.8e-50 203.0 235 45.5
Eucgr.K00819 Eucalyptus grandis HOM05D001891 ORTHO05D005832 8.9e-49 198.0 184 53.3
Cpa.g.sc8.235 Carica papaya HOM05D001891 ORTHO05D005832 1.7e-44 183.7 252 42.1
Hund01107 Selenicereus undatus HOM05D001891 ORTHO05D005832 8.6e-44 181.4 184 52.2
Sed0014701 Sechium edule HOM05D001891 ORTHO05D005832 3.3e-43 179.5 173 52.6
Eucgr.K00824 Eucalyptus grandis HOM05D001891 ORTHO05D005832 7.3e-43 178.3 254 39.0
MBI18_g17390_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 1.4e-41 174.1 178 50.0
Mapoly0057s0093 Marchantia polymorpha HOM05D001891 ORTHO05D005832 7.3e-35 151.8 235 35.3
FAN14G5299 Fragaria x ananassa HOM05D001891 ORTHO05D005832 8.9e-33 144.8 168 45.8
Pp3c13_21910 Physcomitrium patens HOM05D001891 ORTHO05D005832 2.0e-32 143.7 239 34.3
Nitab4.5_0005894g0040 Nicotiana tabacum HOM05D001891 ORTHO05D005832 1.4e-30 137.5 259 36.7
MBI18_g41692_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 9.2e-30 134.8 132 50.8
SMO347G0022 Selaginella moellendorffii HOM05D001891 ORTHO05D005832 8.1e-26 121.7 228 33.8
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 1.8e-25 120.6 131 51.1
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 1.8e-25 120.6 131 51.1
SMO167G0005 Selaginella moellendorffii HOM05D001891 ORTHO05D005832 5.8e-24 115.5 205 33.7
Psat1g072160 Pisum sativum HOM05D002713 ORTHO05D008299 1.6e-21 107.5 88 60.2
MCO06G294 Micromonas commoda HOM05D001891 ORTHO05D005832 3.3e-19 99.8 251 29.9
Aqoxy4G02096 Aquilegia oxysepala HOM05D001891 ORTHO05D005832 1.4e-17 94.4 69 58.0
Cre01.g041100 Chlamydomonas reinhardtii HOM05D001891 ORTHO05D005832 4.0e-17 92.8 286 26.6
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 3.8e-15 86.3 117 43.6
ATR0008G001 Amborella trichopoda HOM05D001891 ORTHO05D005832 4.9e-15 85.9 122 42.6
Lj8A122T61 Lonicera japonica HOM05D001891 ORTHO05D005832 5.4e-14 82.4 54 70.4
HPP92_009396 Vanilla planifolia HOM05D001891 ORTHO05D005832 3.0e-12 76.6 227 25.1
SEGI_29039 Sequoiadendron giganteum HOM05D001891 ORTHO05D005832 3.3e-11 73.2 134 35.1
FvH4_6g43540 Fragaria vesca HOM05D001891 ORTHO05D005832 4.3e-11 72.8 50 62.0
HPP92_009391 Vanilla planifolia HOM05D001891 ORTHO05D005832 2.0e-08 63.9 48 56.2
arahy.Tifrunner.gnm1.ann1.6T7UPN Arachis hypogaea HOM05D003636 ORTHO05D005832 2.6e-08 63.5 81 42.0
MBI02_g40253_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D012380 2.2e-07 60.5 58 50.0
MBI09_g25176_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D012380 4.9e-07 59.3 52 53.8
Nitab4.5_0001176g0160 Nicotiana tabacum HOM05D001891 ORTHO05D005832 4.9e-07 59.3 57 52.6
MBI03_g41360_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D012380 1.1e-06 58.2 73 46.6
Glyma.13G037950 Glycine max HOM05D001891 ORTHO05D005832 1.9e-06 57.4 80 43.8
arahy.Tifrunner.gnm1.ann1.Q3H55W Arachis hypogaea HOM05D003444 ORTHO05D003963 2.4e-06 57.0 47 55.3


User provided reference genes

Program Settings