Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 2.1e-280 968.4 487 100.0
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 1.8e-239 832.4 463 87.7
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.2e-238 829.7 484 84.5
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 2.6e-238 828.6 475 85.9
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 4.4e-238 827.8 471 85.8
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 6.3e-237 823.9 482 85.9
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 8.3e-237 823.5 474 85.4
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 1.4e-236 822.8 461 87.0
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 5.4e-236 820.8 483 84.1
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 1.2e-235 819.7 479 84.3
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.6e-235 819.3 475 84.8
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 2.0e-235 818.9 476 85.1
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 2.7e-235 818.5 461 86.8
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 4.5e-235 817.8 474 83.3
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 4.5e-235 817.8 460 86.7
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 2.3e-234 815.5 480 82.3
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 2.3e-234 815.5 460 86.7
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.1e-233 813.1 473 84.1
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 1.1e-233 813.1 477 84.1
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.5e-233 812.8 470 84.3
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 1.9e-233 812.4 473 84.1
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 7.3e-233 810.4 467 84.4
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 7.3e-233 810.4 480 82.9
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 9.5e-233 810.1 466 84.8
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 9.5e-233 810.1 481 83.0
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 9.5e-233 810.1 473 83.9
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 1.6e-232 809.3 483 82.6
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 1.6e-232 809.3 483 82.4
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 8.0e-232 807.0 486 82.7
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 1.0e-231 806.6 466 85.0
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 1.4e-231 806.2 482 82.0
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 1.8e-231 805.8 461 85.0
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 3.0e-231 805.1 462 85.5
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 3.0e-231 805.1 469 84.2
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 1.5e-230 802.7 462 84.4
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 2.0e-230 802.4 479 83.1
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 2.6e-230 802.0 463 84.2
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 7.5e-230 800.4 486 81.7
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 9.8e-230 800.0 462 84.2
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 9.8e-230 800.0 466 84.8
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 1.3e-229 799.7 461 83.5
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 1.3e-229 799.7 480 82.5
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 1.3e-229 799.7 466 84.5
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 1.3e-229 799.7 481 83.0
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 1.7e-229 799.3 464 83.0
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 2.9e-229 798.5 465 83.9
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 3.7e-229 798.1 463 83.6
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.4e-228 796.2 490 81.2
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 3.2e-228 795.0 464 84.1
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 4.1e-228 794.7 466 83.7
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 7.0e-228 793.9 482 81.1
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 7.0e-228 793.9 465 82.8
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 2.0e-227 792.3 459 83.4
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 2.3e-226 788.9 483 80.5
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 3.9e-226 788.1 465 81.7
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 5.0e-226 787.7 515 77.7
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 8.6e-226 786.9 487 79.7
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.9e-225 785.8 487 80.1
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.5e-225 785.4 521 76.2
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 5.6e-225 784.3 455 84.2
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 7.3e-225 783.9 519 76.5
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 7.3e-225 783.9 469 82.3
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 7.3e-225 783.9 461 82.4
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 2.1e-224 782.3 475 80.0
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.1e-224 782.3 486 80.7
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 2.1e-224 782.3 461 82.6
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 2.1e-224 782.3 494 77.3
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 2.1e-224 782.3 459 82.4
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 3.6e-224 781.6 462 82.5
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 6.2e-224 780.8 464 81.7
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 1.4e-223 779.6 464 83.2
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.4e-223 779.6 462 82.3
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 1.4e-223 779.6 466 80.9
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 4.0e-223 778.1 470 80.4
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.2e-222 776.5 461 80.9
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.5e-222 776.2 464 81.0
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.5e-222 776.2 474 79.5
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 2.0e-222 775.8 459 82.1
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 1.7e-221 772.7 459 81.9
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 1.9e-220 769.2 477 77.8
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 3.2e-220 768.5 464 79.5
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 7.0e-220 767.3 474 77.8
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 9.2e-220 766.9 474 77.6
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 9.2e-220 766.9 461 79.6
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 9.2e-220 766.9 468 79.3
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 2.0e-219 765.8 474 77.6
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 3.5e-219 765.0 474 77.2
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 3.5e-219 765.0 465 79.1
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 1.7e-218 762.7 461 79.2
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 3.9e-218 761.5 459 79.5
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 1.1e-217 760.0 461 79.2
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 2.5e-217 758.8 465 78.3
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.5e-217 758.8 463 78.8
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 9.5e-217 756.9 492 76.4
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 4.7e-216 754.6 546 70.1
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 2.3e-215 752.3 497 76.3
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 5.2e-215 751.1 490 74.7
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 4.4e-214 748.0 489 76.5
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 3.2e-212 741.9 477 75.5
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 9.2e-212 740.3 482 75.9
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.9e-209 732.6 467 78.4
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 2.8e-208 728.8 486 75.5
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 9.9e-206 720.3 462 77.3
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 9.9e-206 720.3 408 85.8
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 2.1e-203 712.6 464 74.4
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 7.8e-203 710.7 459 74.3
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 1.0e-202 710.3 458 73.1
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.1e-201 706.8 414 81.9
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 4.0e-199 698.4 470 73.8
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 3.4e-198 695.3 483 73.5
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 2.9e-197 692.2 458 72.1
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 4.9e-197 691.4 382 88.5
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 6.4e-197 691.0 387 87.9
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 2.4e-196 689.1 382 88.2
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 6.0e-195 684.5 461 71.4
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 2.3e-194 682.6 478 74.3
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.3e-192 676.8 463 73.4
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 7.9e-187 657.5 373 84.7
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 1.3e-186 656.8 728 51.8
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 2.3e-186 656.0 373 85.0
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 7.4e-185 651.0 455 70.5
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 3.6e-184 648.7 477 70.4
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 2.9e-181 639.0 453 66.9
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 3.2e-180 635.6 394 81.0
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 3.8e-173 612.1 458 69.7
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 1.9e-172 609.8 438 68.9
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 2.5e-172 609.4 453 67.3
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 1.2e-166 590.5 353 83.6
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 4.5e-158 562.0 405 73.3
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 2.0e-121 440.3 267 83.5
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 1.3e-120 437.6 332 68.7
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 5.0e-117 425.6 238 87.0
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 1.3e-101 374.4 292 65.1
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 1.1e-95 354.8 251 72.5
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 8.6e-93 345.1 453 40.2
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 7.6e-89 332.0 456 38.8
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 7.1e-87 325.5 452 38.7
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 2.1e-86 323.9 200 78.5
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 9.9e-81 305.1 225 68.4
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 8.4e-64 248.8 400 40.2
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 5.5e-63 246.1 131 89.3
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 1.5e-57 228.0 137 79.6
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 1.4e-55 221.5 164 68.9
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 2.1e-54 217.6 196 60.7
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 2.3e-53 214.2 165 67.9
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 5.7e-44 183.0 98 87.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 2.8e-43 180.6 373 30.6
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 6.9e-42 176.0 249 42.6
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.2e-41 175.3 122 66.4
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 4.5e-41 173.3 133 60.2
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 6.5e-40 169.5 95 88.4
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 1.0e-37 162.2 122 67.2
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 9.1e-34 149.1 93 82.8
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 1.3e-32 145.2 80 87.5
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.5e-31 141.0 124 56.5
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 1.8e-29 134.8 290 31.4
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 3.3e-28 130.6 74 85.1
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 2.4e-26 124.4 100 61.0
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 6.5e-24 116.3 100 59.0
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 1.6e-14 85.1 58 62.1
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 1.2e-12 79.0 67 55.2
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 2.6e-12 77.8 47 72.3
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 4.4e-12 77.0 41 82.9
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 4.8e-11 73.6 78 51.3
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 3.8e-08 63.9 35 77.1
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 5.5e-07 60.1 34 76.5
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 3.6e-06 57.4 38 73.7


User provided reference genes

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