Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 2.1e-143 512.3 253 100.0
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 9.7e-72 274.2 256 55.9
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 1.8e-70 270.0 273 53.1
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 7.2e-67 258.1 255 56.1
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.1e-62 244.2 270 52.2
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.9e-59 233.4 270 51.5
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.9e-59 233.4 247 53.0
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 4.8e-55 218.8 251 49.8
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 7.0e-54 214.9 256 49.6
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 6.1e-50 201.8 245 46.1
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 5.7e-48 195.3 245 44.5
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 6.1e-42 175.3 244 42.2
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 6.1e-42 175.3 251 44.2
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 1.2e-37 161.0 236 40.7
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 6.0e-37 158.7 251 41.8
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 3.0e-36 156.4 254 38.6
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 8.6e-36 154.8 246 37.4
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 8.6e-36 154.8 248 37.1
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 4.3e-35 152.5 249 39.4
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 5.6e-35 152.1 244 37.3
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 1.6e-34 150.6 244 36.1
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 1.6e-34 150.6 244 35.7
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 2.1e-34 150.2 247 37.2
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 4.7e-34 149.1 249 36.1
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 8.0e-34 148.3 244 35.2
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 1.1e-33 147.9 244 37.3
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 1.8e-33 147.1 248 34.7
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 3.1e-33 146.4 245 36.3
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 1.2e-32 144.4 246 37.4
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.2e-32 144.4 250 38.4
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.0e-32 143.7 245 37.6
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 2.6e-32 143.3 246 37.4
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 3.4e-32 142.9 247 34.8
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.4e-32 142.9 253 36.0
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 3.4e-32 142.9 246 37.4
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 3.4e-32 142.9 241 37.8
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 4.4e-32 142.5 244 34.8
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 5.8e-32 142.1 257 35.8
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 5.8e-32 142.1 257 35.0
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 5.8e-32 142.1 246 34.6
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 7.5e-32 141.7 245 35.9
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 7.5e-32 141.7 246 36.6
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 7.5e-32 141.7 244 33.2
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 9.8e-32 141.4 243 36.2
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 9.8e-32 141.4 253 36.8
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 1.3e-31 141.0 251 33.9
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 1.3e-31 141.0 247 35.6
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 2.2e-31 140.2 246 34.6
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.2e-31 140.2 248 37.1
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 2.2e-31 140.2 243 35.4
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 2.9e-31 139.8 246 36.2
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 3.7e-31 139.4 246 35.0
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 4.9e-31 139.0 246 35.8
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 8.3e-31 138.3 257 34.2
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.1e-30 137.9 253 36.4
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.1e-30 137.9 253 34.8
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 1.1e-30 137.9 245 35.1
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 1.4e-30 137.5 247 34.0
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 1.4e-30 137.5 254 32.7
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.4e-30 137.5 255 35.3
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 1.4e-30 137.5 260 34.2
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 1.4e-30 137.5 263 34.2
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 1.4e-30 137.5 245 35.9
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 1.4e-30 137.5 246 35.4
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 2.4e-30 136.7 245 35.1
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.4e-30 136.7 213 38.5
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 3.2e-30 136.3 244 34.8
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 3.2e-30 136.3 257 33.5
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 5.4e-30 135.6 255 33.7
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 5.4e-30 135.6 249 35.3
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 7.0e-30 135.2 255 34.1
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 7.0e-30 135.2 245 34.3
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 7.0e-30 135.2 356 30.9
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 9.2e-30 134.8 254 32.3
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.2e-29 134.4 217 35.9
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 1.6e-29 134.0 254 32.7
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 1.6e-29 134.0 258 34.5
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 1.6e-29 134.0 245 34.3
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 1.6e-29 134.0 244 33.2
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 2.0e-29 133.7 253 34.8
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 2.7e-29 133.3 262 33.6
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 2.7e-29 133.3 247 35.6
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 2.7e-29 133.3 257 33.9
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 3.5e-29 132.9 245 37.6
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 3.5e-29 132.9 243 34.2
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 3.5e-29 132.9 245 34.7
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.6e-29 132.5 255 33.3
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 4.6e-29 132.5 361 29.9
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 6.0e-29 132.1 307 31.6
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 6.0e-29 132.1 251 34.7
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 7.8e-29 131.7 244 33.2
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 1.0e-28 131.3 258 34.1
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 1.0e-28 131.3 246 37.0
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.3e-28 131.0 246 35.0
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 1.3e-28 131.0 249 31.7
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 3.0e-28 129.8 254 31.5
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 3.9e-28 129.4 247 32.0
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 8.6e-28 128.3 254 31.1
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 8.6e-28 128.3 219 35.2
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 1.5e-27 127.5 253 31.2
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 1.5e-27 127.5 246 35.0
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 1.5e-27 127.5 228 33.3
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 1.9e-27 127.1 245 33.5
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 2.5e-27 126.7 246 34.6
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 3.3e-27 126.3 246 35.0
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 5.6e-27 125.6 244 36.1
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 5.6e-27 125.6 255 31.4
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 7.3e-27 125.2 246 31.7
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 1.2e-26 124.4 209 34.4
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 1.2e-26 124.4 254 35.0
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 1.6e-26 124.0 253 32.8
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 1.6e-26 124.0 248 32.3
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.6e-26 124.0 321 31.2
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 2.1e-26 123.6 248 31.5
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 2.8e-26 123.2 252 32.1
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.8e-26 123.2 173 43.9
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 2.8e-26 123.2 246 33.7
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 4.7e-26 122.5 246 32.9
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 8.1e-26 121.7 342 30.1
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.1e-25 121.3 322 31.7
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 1.8e-25 120.6 249 32.9
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 1.8e-25 120.6 246 31.3
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 2.3e-25 120.2 254 29.9
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 4.0e-25 119.4 255 30.6
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.5e-24 117.5 265 34.3
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 1.5e-24 117.5 243 35.4
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 2.0e-24 117.1 164 42.1
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 9.9e-24 114.8 245 31.8
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 4.9e-23 112.5 246 32.5
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 6.4e-23 112.1 248 31.5
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 1.4e-22 110.9 257 30.0
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 1.9e-22 110.5 143 41.3
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.1e-22 109.4 105 52.4
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 3.5e-21 106.3 152 40.8
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.9e-20 102.8 188 36.2
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 8.6e-20 101.7 211 32.7
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 1.1e-19 101.3 220 32.7
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 2.5e-19 100.1 189 32.8
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.5e-19 100.1 249 28.9
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 3.3e-19 99.8 249 28.9
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 7.3e-19 98.6 147 40.8
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 7.3e-19 98.6 300 27.7
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 1.2e-18 97.8 152 39.5
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.6e-18 97.4 204 32.4
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 2.1e-18 97.1 214 31.3
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 2.8e-18 96.7 218 33.0
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 2.8e-18 96.7 147 40.1
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 1.8e-17 94.0 203 30.0
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 1.8e-17 94.0 203 30.0
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 2.4e-17 93.6 254 28.0
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 1.5e-16 90.9 202 29.7
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 1.5e-16 90.9 178 31.5
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 2.2e-15 87.0 255 29.0
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.2e-13 81.3 248 27.0
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.5e-11 74.3 211 32.2
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.3e-11 73.2 174 28.7
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 1.5e-08 64.3 117 35.0
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 2.0e-08 63.9 171 31.6
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 7.6e-08 62.0 73 39.7
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 2.2e-07 60.5 149 27.5
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 6.4e-07 58.9 76 50.0
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 8.4e-07 58.5 76 50.0


User provided reference genes

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