Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 2.9e-180 635.2 339 100.0
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 2.6e-144 515.8 314 82.8
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 3.7e-143 511.9 296 85.1
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 6.3e-143 511.1 314 80.9
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 8.3e-143 510.8 314 81.5
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 1.1e-142 510.4 320 80.9
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 2.4e-142 509.2 299 84.3
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 4.1e-142 508.4 313 81.5
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 4.1e-142 508.4 312 81.7
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 7.0e-142 507.7 313 81.5
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.6e-141 506.5 311 81.0
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 3.5e-141 505.4 319 79.9
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 5.9e-141 504.6 308 82.8
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 5.9e-141 504.6 313 80.2
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 7.7e-141 504.2 315 80.0
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 1.0e-140 503.8 313 80.2
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 1.3e-140 503.4 307 81.4
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 1.3e-140 503.4 309 81.9
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 1.3e-140 503.4 314 80.3
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 1.7e-140 503.1 309 82.2
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 1.7e-140 503.1 318 79.9
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 2.3e-140 502.7 310 80.3
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 2.9e-140 502.3 312 81.1
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 3.8e-140 501.9 311 80.1
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 6.5e-140 501.1 313 79.9
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 8.6e-140 500.7 317 79.8
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 8.6e-140 500.7 313 78.9
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 1.9e-139 499.6 315 77.5
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 2.5e-139 499.2 308 80.8
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 3.3e-139 498.8 308 80.2
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 5.5e-139 498.0 311 79.4
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 5.5e-139 498.0 323 77.4
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 1.2e-138 496.9 316 77.5
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 1.6e-138 496.5 301 82.7
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.6e-138 496.5 312 80.1
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 1.6e-138 496.5 316 78.5
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 2.8e-138 495.7 304 80.3
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 2.8e-138 495.7 312 80.4
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 2.8e-138 495.7 312 80.1
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 3.6e-138 495.4 317 79.2
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 6.1e-138 494.6 312 78.8
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 8.0e-138 494.2 305 81.3
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 1.0e-137 493.8 315 78.1
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 2.3e-137 492.7 309 79.9
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 3.0e-137 492.3 305 80.3
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 1.2e-136 490.3 311 78.8
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 2.0e-136 489.6 326 76.1
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 2.0e-136 489.6 361 70.9
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 3.4e-136 488.8 308 78.2
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 7.5e-136 487.6 314 77.4
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 1.3e-135 486.9 297 81.1
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 1.7e-135 486.5 296 82.4
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 2.2e-135 486.1 311 77.8
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.7e-135 485.3 301 81.1
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 1.4e-134 483.4 305 78.4
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 1.4e-134 483.4 346 72.8
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 2.4e-134 482.6 304 78.3
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 4.1e-134 481.9 313 76.0
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 9.2e-134 480.7 316 75.6
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 9.2e-134 480.7 316 75.6
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 9.2e-134 480.7 316 75.6
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 1.2e-133 480.3 312 77.6
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 2.0e-133 479.6 312 77.9
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 1.0e-132 477.2 311 75.9
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 1.7e-132 476.5 311 75.9
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 2.9e-132 475.7 318 75.2
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 3.8e-132 475.3 304 77.3
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 6.6e-132 474.6 310 75.2
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 6.6e-132 474.6 310 75.2
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 6.6e-132 474.6 310 75.2
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 6.6e-132 474.6 297 80.5
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 1.5e-131 473.4 305 76.1
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 1.5e-131 473.4 305 76.1
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 3.3e-131 472.2 302 76.8
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 7.3e-131 471.1 297 77.1
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 9.5e-131 470.7 313 75.1
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 3.6e-130 468.8 299 75.6
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 1.0e-129 467.2 315 75.9
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 1.0e-129 467.2 317 75.1
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 1.0e-129 467.2 320 74.4
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 4.0e-129 465.3 313 74.4
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 1.2e-128 463.8 303 75.9
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 2.0e-128 463.0 317 72.9
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 2.6e-128 462.6 323 74.6
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 3.4e-128 462.2 312 76.9
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 9.8e-128 460.7 312 74.4
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 1.3e-127 460.3 323 74.3
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 1.3e-127 460.3 322 72.7
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 1.3e-127 460.3 315 74.3
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 1.7e-127 459.9 309 74.8
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 1.7e-127 459.9 312 74.4
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 3.7e-127 458.8 311 73.3
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 6.4e-127 458.0 309 73.8
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 6.4e-127 458.0 309 73.8
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 1.9e-126 456.4 308 73.7
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 3.2e-126 455.7 308 74.7
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 4.1e-126 455.3 318 71.4
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 7.0e-126 454.5 316 71.8
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 7.0e-126 454.5 316 71.8
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 3.9e-124 448.7 298 76.5
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 8.6e-124 447.6 313 73.5
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 3.3e-123 445.7 321 70.1
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 4.3e-123 445.3 321 70.1
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 5.6e-123 444.9 320 70.3
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 1.6e-122 443.4 258 84.9
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 4.6e-117 425.2 312 71.5
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 5.0e-116 421.8 300 71.0
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 5.0e-116 421.8 269 77.7
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 9.5e-115 417.5 302 71.9
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 2.8e-106 389.4 311 61.1
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 5.2e-105 385.2 319 59.9
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 3.4e-104 382.5 227 83.3
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 9.9e-104 380.9 228 83.8
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 2.4e-102 376.3 296 61.1
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 2.4e-102 376.3 284 63.4
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.6e-101 373.6 267 75.7
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 7.8e-101 371.3 257 73.5
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.7e-100 370.2 291 69.4
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 3.6e-98 362.5 318 61.6
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 2.4e-97 359.8 275 61.1
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 3.1e-97 359.4 273 60.8
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 1.3e-95 354.0 226 77.4
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 4.9e-95 352.1 238 73.9
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 2.4e-89 333.2 246 65.9
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.7e-79 300.4 238 67.6
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 9.0e-73 278.1 281 46.3
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 1.2e-69 267.7 292 46.2
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 5.1e-68 262.3 149 83.9
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 6.3e-66 255.4 314 47.5
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 5.3e-65 252.3 165 80.0
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 3.9e-52 209.5 229 46.7
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 3.2e-46 189.9 112 80.4
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 4.2e-46 189.5 159 61.6
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 1.4e-41 174.5 289 36.7
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 4.5e-40 169.5 372 32.0
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.2e-38 163.3 194 51.5
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.7e-34 151.0 94 79.8
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 4.8e-34 149.4 94 78.7
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 4.8e-34 149.4 94 78.7
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 9.1e-33 145.2 100 72.0
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.2e-32 144.8 84 84.5
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 4.5e-32 142.9 97 77.3
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 1.3e-31 141.4 95 77.9
Gorai.007G256100 Gossypium raimondii HOM05D004753 ORTHO05D005920 8.3e-18 95.5 64 75.0
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 8.3e-18 95.5 100 56.0
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 1.7e-15 87.8 53 79.2
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.9e-15 87.0 59 74.6
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 8.6e-15 85.5 91 49.5
CANSAT21G1846 Cannabis sativa HOM05D000521 ORTHO05D000384 8.0e-13 79.0 50 74.0
Hma1.2p1_1471F.1_g285675 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 2.3e-12 77.4 47 76.6
Hma1.2p1_1471F.1_g285690 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 2.3e-12 77.4 47 76.6
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.3e-06 57.0 30 86.7
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.3e-06 57.0 30 86.7
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.3e-06 57.0 30 86.7
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.3e-06 57.0 30 86.7
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.3e-06 57.0 30 86.7


User provided reference genes

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