Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_011887 Daucus carota HOM05D005442 ORTHO05D006450 5.8e-210 734.6 557 100.0
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 4.0e-70 270.0 307 49.2
Actinidia39159 Actinidia chinensis HOM05D005442 ORTHO05D006450 3.9e-65 253.4 380 42.1
vmacro17319 Vaccinium macrocarpon HOM05D005442 ORTHO05D006450 3.9e-65 253.4 333 45.0
Actinidia21468 Actinidia chinensis HOM05D005442 ORTHO05D006450 3.3e-64 250.4 380 41.6
CSS0044298 Camellia sinensis var. sinensis HOM05D005442 ORTHO05D006450 1.8e-62 244.6 324 44.4
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 1.2e-61 241.9 331 44.7
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 1.2e-61 241.9 331 44.7
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 1.5e-61 241.5 308 46.4
TAR376G0424 Trochodendron aralioides HOM05D005442 ORTHO05D006450 3.5e-58 230.3 371 40.7
CANSAT56G0103 Cannabis sativa HOM05D005442 ORTHO05D006450 4.6e-58 229.9 369 40.7
TAR369G0572 Trochodendron aralioides HOM05D005442 ORTHO05D006450 4.6e-58 229.9 356 41.9
Atru.chr5.3384 Acer truncatum HOM05D005442 ORTHO05D006450 1.6e-55 221.5 351 39.6
Ciclev10028168m.g Citrus clementina HOM05D005442 ORTHO05D006450 2.8e-55 220.7 349 41.3
ClCG02G012030 Citrullus lanatus HOM05D005442 ORTHO05D006450 1.4e-54 218.4 387 39.8
Eucgr.I01451 Eucalyptus grandis HOM05D005442 ORTHO05D006450 1.4e-54 218.4 306 42.2
Lj5g0013939 Lotus japonicus HOM05D005442 ORTHO05D006450 1.8e-54 218.0 329 41.9
Peaxi162Scf00362g00530 Petunia axillaris HOM05D005442 ORTHO05D006450 2.0e-53 214.5 327 41.9
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 7.6e-53 212.6 352 40.3
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 1.0e-52 212.2 356 39.9
GSVIVG01023996001 Vitis vinifera HOM05D005442 ORTHO05D006450 1.7e-52 211.5 332 41.6
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 8.5e-52 209.1 381 36.5
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 8.5e-52 209.1 348 41.4
Sabra09G0106500 Salix brachista HOM05D005442 ORTHO05D006450 1.4e-51 208.4 315 41.6
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 2.5e-51 207.6 323 41.2
SGA_v2.0_scaffold58G20356 Striga asiatica HOM05D002097 ORTHO05D002248 4.2e-51 206.8 346 39.6
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 9.3e-51 205.7 314 41.4
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 2.7e-50 204.1 342 40.4
MELO3C020828.2 Cucumis melo HOM05D005442 ORTHO05D006450 3.6e-50 203.8 326 40.2
Glyma.20G106900 Glycine max HOM05D005442 ORTHO05D006450 3.6e-50 203.8 324 41.0
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 1.3e-49 201.8 322 40.4
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 3.9e-49 200.3 397 36.8
CiPaw.05G084400 Carya illinoinensis HOM05D005442 ORTHO05D006450 5.1e-49 199.9 373 37.3
Psat6g232320 Pisum sativum HOM05D005442 ORTHO05D006450 6.7e-49 199.5 371 37.5
PSO541G1416 Papaver somniferum HOM05D005442 ORTHO05D006450 1.1e-48 198.7 353 37.4
Manes.01G140900 Manihot esculenta HOM05D005442 ORTHO05D006450 1.5e-48 198.4 391 39.9
Nn1g06499 Nelumbo nucifera HOM05D005442 ORTHO05D006450 1.5e-48 198.4 281 42.7
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 4.3e-48 196.8 312 41.7
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 9.7e-48 195.7 335 37.0
CsaV3_2G016200 Cucumis sativus L. HOM05D005442 ORTHO05D006450 1.3e-47 195.3 327 39.4
QL11p051413 Quercus lobata HOM05D005442 ORTHO05D006450 1.6e-47 194.9 358 36.3
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 1.1e-46 192.2 348 38.2
Medtr1g112820 Medicago truncatula HOM05D005442 ORTHO05D002291 2.4e-46 191.0 302 41.7
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 6.9e-46 189.5 311 42.4
Aqoxy6G02079 Aquilegia oxysepala HOM05D005442 ORTHO05D006450 2.0e-45 188.0 359 37.9
unitig_744.g24278 Utricularia gibba HOM05D005442 ORTHO05D006450 5.9e-45 186.4 322 38.8
ATR0763G134 Amborella trichopoda HOM05D005442 ORTHO05D006450 1.0e-44 185.7 298 40.9
EL10Ac9g21351 Beta vulgaris HOM05D005442 ORTHO05D006450 1.0e-44 185.7 316 38.9
Actinidia32035 Actinidia chinensis HOM05D005442 ORTHO05D006450 2.2e-44 184.5 186 54.3
PSO675G1865 Papaver somniferum HOM05D005442 ORTHO05D006450 2.2e-44 184.5 308 39.9
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 3.8e-44 183.7 384 34.9
Gorai.005G254900 Gossypium raimondii HOM05D005442 ORTHO05D006450 1.4e-43 181.8 384 34.9
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 9.4e-43 179.1 275 42.2
AUR62013010 Chenopodium quinoa HOM05D005442 ORTHO05D006450 9.4e-43 179.1 315 36.8
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 1.6e-42 178.3 278 41.4
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 1.6e-42 178.3 379 35.9
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 2.1e-42 177.9 326 39.0
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 4.6e-42 176.8 257 46.3
arahy.Tifrunner.gnm1.ann1.WUXL4S Arachis hypogaea HOM05D005442 ORTHO05D006450 6.1e-42 176.4 342 38.3
arahy.Tifrunner.gnm1.ann1.ZGQ44R Arachis hypogaea HOM05D005442 ORTHO05D006450 6.1e-42 176.4 342 38.3
Haze_13370 Corylus avellana HOM05D005442 ORTHO05D006450 6.1e-42 176.4 296 40.2
Gohir.D02G227000 Gossypium hirsutum HOM05D005442 ORTHO05D006450 6.1e-42 176.4 384 34.4
PGR142G2067 Punica granatum HOM05D005442 ORTHO05D006450 6.1e-42 176.4 341 35.5
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 1.8e-41 174.9 367 38.4
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 1.8e-41 174.9 367 38.4
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 2.3e-41 174.5 365 38.1
Lj5A177G53 Lonicera japonica HOM05D005442 ORTHO05D006450 3.0e-41 174.1 176 51.7
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 5.1e-41 173.3 367 38.1
Zm00001eb134390 Zea mays HOM05D005442 ORTHO05D006450 5.1e-41 173.3 280 40.0
AUR62010020 Chenopodium quinoa HOM05D005442 ORTHO05D006450 6.7e-41 172.9 357 34.5
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 1.5e-40 171.8 396 34.3
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 2.0e-40 171.4 367 37.9
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 2.0e-40 171.4 367 37.9
HPP92_022198 Vanilla planifolia HOM05D005442 ORTHO05D006450 2.0e-40 171.4 375 34.7
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 3.3e-40 170.6 366 36.9
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 3.3e-40 170.6 340 36.2
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 7.4e-40 169.5 305 37.4
SalBow1G0486 Salvia bowleyana HOM05D005442 ORTHO05D006450 7.4e-40 169.5 395 35.4
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 1.7e-39 168.3 370 35.9
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 2.2e-39 167.9 372 35.8
HPP92_022180 Vanilla planifolia HOM05D005442 ORTHO05D006450 4.8e-39 166.8 375 33.9
Duzib132G0277 Durio zibethinus HOM05D005442 ORTHO05D006450 8.2e-39 166.0 309 37.9
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 1.8e-38 164.9 355 36.6
Os02g0101100 Oryza sativa ssp. japonica HOM05D005442 ORTHO05D006450 1.8e-38 164.9 258 38.4
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 2.4e-38 164.5 377 35.3
CARHR033820 Cardamine hirsuta HOM05D005442 ORTHO05D006450 1.2e-37 162.2 369 36.0
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 2.2e-36 157.9 358 33.8
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 5.0e-36 156.8 363 35.0
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 2.7e-34 151.0 358 32.7
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 3.6e-34 150.6 382 30.9
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 3.6e-34 150.6 382 30.9
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 5.2e-33 146.7 382 30.9
Oeu015514.1 Olea europaea HOM05D005442 ORTHO05D006450 2.2e-31 141.4 150 50.7
Prupe.8G167900 Prunus persica HOM05D005442 ORTHO05D006450 2.2e-31 141.4 382 32.5
TPR.G2470 Trifolium pratense HOM05D005442 ORTHO05D006450 2.2e-31 141.4 314 37.3
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 4.8e-31 140.2 358 32.1
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 8.2e-31 139.4 143 56.6
CAN.G588.93 Capsicum annuum HOM05D005442 ORTHO05D006450 1.4e-30 138.7 174 47.7
Atru.chr3.3284 Acer truncatum HOM05D005442 ORTHO05D006450 1.2e-29 135.6 203 39.9
Ah.01g023170 Amaranthus hybridus HOM05D005442 ORTHO05D006450 7.7e-29 132.9 315 32.7
Rhsim05G0053500 Rhododendron simsii HOM05D005442 ORTHO05D006450 5.0e-28 130.2 210 39.5
HanXRQChr08g0227271 Helianthus annuus HOM05D005442 ORTHO05D006450 2.5e-27 127.9 244 37.3
TWI79G1761 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 1.2e-26 125.6 207 40.6
VMungo0720G2182 Vigna mungo HOM05D005442 ORTHO05D006450 1.7e-20 105.1 209 32.5
C03p57670 Brassica napus HOM05D005442 ORTHO05D006450 3.8e-20 104.0 125 48.8
HPP92_028071 Vanilla planifolia HOM05D005442 ORTHO05D006450 5.0e-20 103.6 270 31.5
BolC3t18042H Brassica oleracea HOM05D005442 ORTHO05D013811 2.7e-18 97.8 124 46.8
Rhsim05G0053300 Rhododendron simsii HOM05D005442 ORTHO05D006450 2.7e-18 97.8 121 46.3
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 4.7e-18 97.1 259 29.0
BcaC01g02969 Brassica carinata HOM05D005442 ORTHO05D006450 4.0e-17 94.0 110 50.0
Cc02_g27640 Coffea canephora HOM05D005442 ORTHO05D006450 8.8e-17 92.8 189 36.0
SHI05769 Sapria himalayana HOM05D005442 ORTHO05D006450 1.5e-16 92.0 234 31.2
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 4.4e-16 90.5 125 45.6
C03p57690 Brassica napus HOM05D005442 ORTHO05D013811 2.8e-15 87.8 110 49.1
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 4.8e-15 87.0 125 44.0
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 4.8e-15 87.0 134 39.6
Lj5A177G54 Lonicera japonica HOM05D005442 ORTHO05D006450 5.9e-13 80.1 231 28.6
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 7.7e-13 79.7 148 37.2
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 3.2e-11 74.3 142 36.6
Rhsim09G0155200 Rhododendron simsii HOM05D005442 ORTHO05D006450 3.6e-10 70.9 58 53.4
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 3.0e-09 67.8 130 33.8
CAN.G588.92 Capsicum annuum HOM05D005442 ORTHO05D006450 6.8e-09 66.6 91 44.0
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 3.4e-08 64.3 137 31.4
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 3.4e-08 64.3 128 33.6
MCO13G079 Micromonas commoda HOM05D005442 ORTHO05D006450 9.8e-08 62.8 131 32.8
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 1.7e-07 62.0 134 30.6
Cfa023336 Carpinus fangiana HOM05D005442 ORTHO05D006450 2.2e-07 61.6 106 34.0
Nitab4.5_0003698g0060 Nicotiana tabacum HOM05D005442 ORTHO05D006450 2.2e-07 61.6 124 35.5
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 2.8e-07 61.2 122 32.0
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 2.8e-07 61.2 130 31.5
BolC3t18043H Brassica oleracea HOM05D008551 ORTHO05D006450 3.7e-07 60.8 76 50.0
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 3.7e-07 60.8 134 32.8
Oeu032532.1 Olea europaea HOM05D005442 ORTHO05D006450 3.7e-07 60.8 147 32.0
BcaC01g02968 Brassica carinata HOM05D005442 ORTHO05D006450 6.3e-07 60.1 124 37.1
SEGI_12526 Sequoiadendron giganteum HOM05D005442 ORTHO05D006450 6.3e-07 60.1 42 64.3
Potri.009G137000 Populus trichocarpa HOM05D005442 ORTHO05D006450 8.3e-07 59.7 55 52.7
C03p57650 Brassica napus HOM05D005442 ORTHO05D006450 3.1e-06 57.8 51 52.9
BolC3t18039H Brassica oleracea HOM05D005442 ORTHO05D006450 3.1e-06 57.8 51 52.9


User provided reference genes

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