Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 0.0e+00 3421.7 1701 100.0
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 0.0e+00 2498.4 1750 73.1
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 0.0e+00 2417.5 1828 68.6
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 0.0e+00 2398.6 1769 70.0
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 0.0e+00 2378.6 1726 70.4
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 0.0e+00 2378.6 1756 69.6
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 0.0e+00 2371.7 1725 69.5
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2370.9 1725 69.4
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 0.0e+00 2363.6 1727 69.0
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 0.0e+00 2363.2 1726 69.6
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 0.0e+00 2352.8 1730 69.1
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 0.0e+00 2340.1 1729 68.9
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 0.0e+00 2337.4 1837 65.8
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 0.0e+00 2336.2 1724 69.0
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 0.0e+00 2334.7 1732 69.3
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 0.0e+00 2334.7 1728 68.0
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 0.0e+00 2327.7 1737 68.0
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2309.6 1731 67.6
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 0.0e+00 2308.9 1693 69.9
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 0.0e+00 2308.1 1725 68.3
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 0.0e+00 2301.6 1728 68.3
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 0.0e+00 2293.1 1714 68.4
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 0.0e+00 2281.5 1732 66.7
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2273.4 1738 66.6
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 0.0e+00 2270.4 1726 67.5
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2265.0 1750 65.9
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 0.0e+00 2261.1 1598 71.8
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 0.0e+00 2253.0 1866 63.6
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2252.2 1595 70.7
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2251.1 1785 64.6
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 0.0e+00 2250.7 1727 67.2
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 0.0e+00 2249.9 1726 67.0
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 2249.2 1727 66.8
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2243.8 1734 66.2
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 2243.4 1744 66.3
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 0.0e+00 2241.8 1728 65.6
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2238.4 1727 66.4
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 0.0e+00 2236.8 1729 65.2
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 0.0e+00 2235.3 1721 66.2
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 0.0e+00 2233.4 1726 66.4
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 0.0e+00 2232.6 1725 65.7
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 0.0e+00 2229.1 1729 65.5
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 0.0e+00 2223.0 1722 66.1
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 0.0e+00 2222.6 1722 65.4
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 2221.0 1722 65.6
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 0.0e+00 2221.0 1727 65.5
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 0.0e+00 2216.8 1725 64.9
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 0.0e+00 2216.8 1726 65.8
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 0.0e+00 2214.5 1735 65.5
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 2206.8 1733 65.4
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 0.0e+00 2202.2 1721 65.3
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 0.0e+00 2182.5 1800 64.2
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 0.0e+00 2181.0 1586 70.4
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2158.3 1726 64.5
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 0.0e+00 2157.1 1722 65.0
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2152.5 1730 63.4
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 2149.4 1727 64.0
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 0.0e+00 2120.1 1723 63.3
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 0.0e+00 2113.2 1728 63.2
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 0.0e+00 2105.1 1747 63.2
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2090.8 1730 62.0
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 0.0e+00 2080.4 1727 62.2
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 2078.5 1726 62.3
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 2070.0 1598 67.4
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 2066.6 1837 58.5
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 0.0e+00 2060.8 1732 62.0
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 0.0e+00 2054.6 1731 61.3
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 0.0e+00 2052.3 1731 61.5
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 0.0e+00 2037.7 1724 61.6
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 2037.3 1733 61.1
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2023.8 1738 61.0
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 2015.0 1755 60.1
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 2015.0 1742 60.8
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2010.0 1733 60.6
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 2009.6 1725 60.5
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 0.0e+00 2009.2 1453 70.1
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2005.7 1745 60.2
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 0.0e+00 1989.2 1738 58.8
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 1980.7 1733 60.2
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 0.0e+00 1952.6 1731 59.3
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 0.0e+00 1951.8 1605 63.2
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 0.0e+00 1937.2 1470 67.7
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 0.0e+00 1932.1 1728 58.8
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 0.0e+00 1882.1 1727 58.5
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1678.3 1413 62.6
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1678.3 1199 70.1
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 0.0e+00 1650.6 1746 52.5
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 0.0e+00 1649.4 1217 67.3
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 0.0e+00 1645.2 1225 69.0
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 0.0e+00 1561.2 1310 63.1
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 0.0e+00 1467.6 970 74.8
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 0.0e+00 1404.4 1823 45.6
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 0.0e+00 1371.3 1811 44.0
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1347.8 1335 56.6
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 0.0e+00 1328.5 1667 45.3
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 1274.2 948 69.6
Peaxi162Scf00284g00913 Petunia axillaris HOM05D003492 ORTHO05D005115 0.0e+00 1218.0 775 77.7
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 0.0e+00 1210.7 934 64.0
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 0.0e+00 1203.3 1152 57.0
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 0.0e+00 1196.8 1217 54.1
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 0.0e+00 1172.1 1708 41.7
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 0.0e+00 1166.4 918 69.3
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 0.0e+00 1128.6 906 62.3
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 4.6e-282 975.7 2119 33.5
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 4.9e-268 929.1 773 64.2
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 2.2e-228 797.3 716 56.0
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 6.7e-225 785.8 708 59.6
CAN.G1193.3 Capsicum annuum HOM05D003492 ORTHO05D005115 1.9e-224 784.3 521 74.5
SMO105G0008 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 1.1e-216 758.4 836 50.7
Actinidia13944 Actinidia chinensis HOM05D003492 ORTHO05D005115 3.0e-209 733.8 519 69.7
SHI03328 Sapria himalayana HOM05D003492 ORTHO05D005115 1.7e-207 728.0 513 68.6
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.1e-194 684.5 873 49.4
SEGI_27844 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 6.5e-188 662.9 522 61.7
Rhsim10G0095300 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.5e-187 661.0 565 64.8
MCO04G065 Micromonas commoda HOM05D003492 ORTHO05D005115 1.2e-173 615.5 829 43.5
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 3.3e-171 607.4 876 41.7
CiPaw.01G300100 Carya illinoinensis HOM05D003492 ORTHO05D005115 9.2e-166 589.3 536 60.8
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 8.6e-164 582.8 735 46.3
FAN03G1608 Fragaria x ananassa HOM05D003492 ORTHO05D005115 3.7e-151 540.8 524 54.8
CAN.G1782.1 Capsicum annuum HOM05D003492 ORTHO05D005115 5.2e-145 520.4 439 63.3
SHI03332 Sapria himalayana HOM05D003492 ORTHO05D005115 3.4e-144 517.7 434 62.2
CAN.G78.71 Capsicum annuum HOM05D003492 ORTHO05D005115 1.6e-141 508.8 332 76.2
Cc02_g06300 Coffea canephora HOM05D003492 ORTHO05D005115 4.0e-137 494.2 394 63.7
Lj8A65G43 Lonicera japonica HOM05D003492 ORTHO05D005115 1.4e-129 469.2 317 75.7
Hund28567 Selenicereus undatus HOM05D003492 ORTHO05D005115 2.3e-116 425.2 505 46.9
Hund29345 Selenicereus undatus HOM05D003492 ORTHO05D005115 2.3e-116 425.2 505 46.9
Cre13.g579100 Chlamydomonas reinhardtii HOM05D003492 ORTHO05D005115 2.4e-113 415.2 819 35.9
Actinidia35642 Actinidia chinensis HOM05D003492 ORTHO05D005115 3.1e-113 414.8 428 56.5
SalBow5G5368 Salvia bowleyana HOM05D003492 ORTHO05D005115 1.7e-111 409.1 373 56.8
HPP92_012038 Vanilla planifolia HOM05D003492 ORTHO05D005115 4.3e-99 367.9 378 52.6
Gorai.011G292700 Gossypium raimondii HOM05D003492 ORTHO05D005115 7.4e-99 367.1 254 73.6
CAN.G78.70 Capsicum annuum HOM05D003492 ORTHO05D005115 3.7e-90 338.2 186 90.3
Cfa022850 Carpinus fangiana HOM05D003492 ORTHO05D005115 7.2e-86 323.9 825 29.9
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 7.2e-78 297.4 420 42.1
Nitab4.5_0011089g0020 Nicotiana tabacum HOM05D003492 ORTHO05D005115 9.7e-75 287.0 295 55.3
Lj8A65T41 Lonicera japonica HOM05D003492 ORTHO05D005115 4.7e-69 268.1 164 78.0
Hma1.2p1_0235F.1_g098570 Hydrangea macrophylla HOM05D003492 ORTHO05D005115 3.7e-66 258.5 221 66.1
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 1.1e-62 246.9 347 44.1
TAR623G0911 Trochodendron aralioides HOM05D003492 ORTHO05D005115 1.5e-59 236.5 226 58.0
Ca_30996_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 5.4e-49 201.4 209 56.0
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 1.3e-47 196.8 226 47.8
CAN.G78.73 Capsicum annuum HOM05D003492 ORTHO05D005115 1.2e-37 163.7 299 39.1
Psat1g148680 Pisum sativum HOM05D003492 ORTHO05D024801 3.6e-37 162.2 132 63.6
Lsat_1_v5_gn_4_75100 Lactuca sativa HOM05D003492 ORTHO05D016080 4.0e-36 158.7 108 68.5
Cc02_g06290 Coffea canephora HOM05D003492 ORTHO05D005115 5.2e-36 158.3 101 76.2
Psat7g005400 Pisum sativum HOM05D003492 ORTHO05D024801 6.8e-36 157.9 185 50.3
HPP92_012037 Vanilla planifolia HOM05D003492 ORTHO05D005115 3.4e-35 155.6 159 50.9
MBI08_g18764_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 4.9e-34 151.8 169 49.1
Lsat_1_v5_gn_1_82880 Lactuca sativa HOM05D003492 ORTHO05D005115 1.1e-33 150.6 109 68.8
CAN.G78.72 Capsicum annuum HOM05D003492 ORTHO05D019467 4.6e-32 145.2 165 43.6
Lj8C65T9 Lonicera japonica HOM05D003492 ORTHO05D019467 3.9e-31 142.1 131 55.7
SHI03333 Sapria himalayana HOM05D003492 ORTHO05D005115 5.6e-30 138.3 166 46.4
Rhsim10G0095400 Rhododendron simsii HOM05D003492 ORTHO05D005115 3.6e-29 135.6 103 64.1
MBI12_g24829_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D011152 6.4e-26 124.8 156 43.6
Lsat_1_v5_gn_9_80501 Lactuca sativa HOM05D003662 ORTHO05D001824 1.1e-25 124.0 144 52.8
SEGI_03313 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 1.9e-25 123.2 207 36.7
Actinidia00955 Actinidia chinensis HOM05D003492 ORTHO05D019467 9.2e-25 120.9 111 56.8
Thhalv10015394m.g Eutrema salsugineum HOM05D003492 ORTHO05D035223 1.7e-23 116.7 147 46.9
SHI03327 Sapria himalayana HOM05D003492 ORTHO05D000001 3.9e-23 115.5 134 46.3
BcaB01g05927 Brassica carinata HOM05D003492 ORTHO05D016080 4.3e-22 112.1 124 50.8
CAN.G1193.2 Capsicum annuum HOM05D003492 ORTHO05D019467 7.3e-22 111.3 131 41.2
Psat4g081200 Pisum sativum HOM05D003492 ORTHO05D000696 3.1e-20 105.9 195 35.9
Actinidia03517 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.2e-19 104.0 54 81.5
Lsat_1_v5_gn_7_99341 Lactuca sativa HOM05D003492 ORTHO05D016080 5.8e-19 101.7 87 55.2
SEGI_23081 Sequoiadendron giganteum HOM05D003492 ORTHO05D019467 1.3e-18 100.5 177 35.6
Psat7g097320 Pisum sativum HOM05D003492 ORTHO05D024801 4.9e-18 98.6 97 57.7
SHI03336 Sapria himalayana HOM05D003492 ORTHO05D005115 8.4e-18 97.8 131 45.0
SHI03335 Sapria himalayana HOM05D003492 ORTHO05D005115 7.1e-17 94.7 86 52.3
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 1.6e-16 93.6 81 51.9
CAN.G78.69 Capsicum annuum HOM05D003492 ORTHO05D024801 6.0e-16 91.7 71 70.4
Actinidia02211 Actinidia chinensis HOM05D003492 ORTHO05D005115 5.3e-12 78.6 86 50.0
HPP92_012036 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.7e-10 73.6 120 37.5
MBI18_g01105_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 3.8e-10 72.4 61 60.7
HanXRQChr15g0464841 Helianthus annuus HOM05D003492 ORTHO05D005115 2.4e-09 69.7 77 51.9
Lsat_1_v5_gn_8_83220 Lactuca sativa HOM05D003492 ORTHO05D016080 7.1e-09 68.2 56 58.9
Lsat_1_v5_gn_6_70980 Lactuca sativa HOM05D000917 ORTHO05D016080 1.6e-08 67.0 48 66.7
Lsat_1_v5_gn_1_119241 Lactuca sativa HOM05D003492 ORTHO05D016080 1.3e-07 63.9 92 44.6
Potri.010G187201 Populus trichocarpa HOM05D003492 ORTHO05D019467 1.8e-07 63.5 64 45.3
MBI08_g18763_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D010488 2.5e-06 59.7 42 71.4
Actinidia02220 Actinidia chinensis HOM05D003492 ORTHO05D005115 3.3e-06 59.3 38 68.4


User provided reference genes

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