Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_011309 Daucus carota HOM05D005629 ORTHO05D008000 1.9e-181 639.0 327 100.0
Cfa007230 Carpinus fangiana HOM05D005629 ORTHO05D008000 9.7e-141 503.8 322 80.1
Lju41A52T99 Lonicera japonica HOM05D005629 ORTHO05D008000 8.3e-140 500.7 313 82.4
GSVIVG01033097001 Vitis vinifera HOM05D005629 ORTHO05D008000 7.0e-139 497.7 329 77.8
Dinv33339 Davidia involucrata HOM05D005629 ORTHO05D008000 1.2e-138 496.9 332 76.8
Ciclev10015840m.g Citrus clementina HOM05D005629 ORTHO05D008000 4.5e-138 495.0 317 79.8
Haze_14872 Corylus avellana HOM05D005629 ORTHO05D008000 5.9e-138 494.6 312 81.1
CAN.G1751.5 Capsicum annuum HOM05D005629 ORTHO05D008000 7.7e-138 494.2 285 86.3
Eucgr.I01649 Eucalyptus grandis HOM05D005629 ORTHO05D008000 1.0e-137 493.8 305 82.3
Hma1.2p1_1278F.1_g272330 Hydrangea macrophylla HOM05D005629 ORTHO05D008000 1.0e-137 493.8 333 77.2
CiPaw.03G055300 Carya illinoinensis HOM05D005629 ORTHO05D008000 2.9e-137 492.3 322 79.8
Actinidia36200 Actinidia chinensis HOM05D005629 ORTHO05D008000 5.0e-137 491.5 336 75.9
QL02p071469 Quercus lobata HOM05D005629 ORTHO05D008000 6.5e-137 491.1 298 82.9
HanXRQChr17g0550111 Helianthus annuus HOM05D005629 ORTHO05D008000 8.5e-137 490.7 337 75.1
Prupe.3G305800 Prunus persica HOM05D005629 ORTHO05D008000 1.1e-136 490.3 321 78.2
Aqoxy3G01541 Aquilegia oxysepala HOM05D005629 ORTHO05D008000 1.5e-136 490.0 318 77.7
PGSC0003DMG400013378 Solanum tuberosum HOM05D005629 ORTHO05D008000 1.5e-136 490.0 321 78.2
FAN09G2642 Fragaria x ananassa HOM05D005629 ORTHO05D008000 2.5e-136 489.2 293 81.9
FvH4_6g53470 Fragaria vesca HOM05D005629 ORTHO05D008000 3.2e-136 488.8 317 77.9
PSO017G3506 Papaver somniferum HOM05D005629 ORTHO05D008000 3.2e-136 488.8 318 78.3
MD09G1011200 Malus domestica HOM05D005629 ORTHO05D008000 4.2e-136 488.4 323 77.7
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 2.7e-135 485.7 316 78.5
Lj1g0025061 Lotus japonicus HOM05D005629 ORTHO05D008000 4.7e-135 485.0 334 73.7
Nitab4.5_0005161g0130 Nicotiana tabacum HOM05D005629 ORTHO05D008000 8.0e-135 484.2 312 80.1
Solyc03g005000.4 Solanum lycopersicum HOM05D005629 ORTHO05D008000 1.0e-134 483.8 321 77.3
Cc07_g00800 Coffea canephora HOM05D005629 ORTHO05D008000 1.4e-134 483.4 283 83.0
Sopen03g001010 Solanum pennellii HOM05D005629 ORTHO05D008000 1.4e-134 483.4 321 77.3
Nitab4.5_0000559g0400 Nicotiana tabacum HOM05D005629 ORTHO05D008000 3.0e-134 482.3 278 87.1
ECA246G2396 Erigeron canadensis HOM05D005629 ORTHO05D008000 4.0e-134 481.9 290 82.4
RcHm_v2.0_Chr2g0175511 Rosa chinensis HOM05D005629 ORTHO05D008000 5.2e-134 481.5 293 80.9
COL.COLO4_17207 Corchorus olitorius HOM05D005629 ORTHO05D008000 6.8e-134 481.1 319 75.5
ClCG05G013480 Citrullus lanatus HOM05D005629 ORTHO05D008000 1.5e-133 479.9 333 73.0
Actinidia05920 Actinidia chinensis HOM05D005629 ORTHO05D008000 2.6e-133 479.2 313 79.2
Migut.F00066 Erythranthe guttata HOM05D005629 ORTHO05D008000 2.6e-133 479.2 287 82.9
TWI56G1125 Tripterygium wilfordii HOM05D005629 ORTHO05D008000 2.6e-133 479.2 322 76.4
SalBow4G2288 Salvia bowleyana HOM05D005629 ORTHO05D008000 3.4e-133 478.8 322 75.8
Thecc.04G035600 Theobroma cacao HOM05D005629 ORTHO05D008000 3.4e-133 478.8 327 74.6
Sc03g0006560 Simmondsia chinensis HOM05D005629 ORTHO05D008000 9.8e-133 477.2 305 77.7
Peaxi162Scf00700g00023 Petunia axillaris HOM05D005629 ORTHO05D008000 1.3e-132 476.9 317 77.9
Ca_26782_v3 Cicer arietinum L. HOM05D005629 ORTHO05D008000 2.8e-132 475.7 332 73.8
Glyma.16G056900 Glycine max HOM05D005629 ORTHO05D008000 2.8e-132 475.7 299 79.3
EL10Ac6g15359 Beta vulgaris HOM05D005629 ORTHO05D008000 4.8e-132 474.9 306 77.8
Gohir.D07G235300 Gossypium hirsutum HOM05D005629 ORTHO05D008000 4.8e-132 474.9 322 72.7
Atru.chr6.2566 Acer truncatum HOM05D005629 ORTHO05D008000 8.3e-132 474.2 298 78.2
CANSAT64G1539 Cannabis sativa HOM05D005629 ORTHO05D008000 1.1e-131 473.8 279 83.9
Gohir.A11G064500 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.4e-131 473.4 322 73.0
Lalb_Chr14g0363391 Lupinus albus HOM05D005629 ORTHO05D008000 1.4e-131 473.4 328 73.2
arahy.Tifrunner.gnm1.ann1.26H0NE Arachis hypogaea HOM05D005629 ORTHO05D008000 1.8e-131 473.0 327 73.7
Gohir.D11G068800 Gossypium hirsutum HOM05D005629 ORTHO05D008000 3.1e-131 472.2 322 72.7
Gorai.001G271100 Gossypium raimondii HOM05D005629 ORTHO05D008000 5.4e-131 471.5 323 72.8
VMungo1383G2395 Vigna mungo HOM05D005629 ORTHO05D008000 5.4e-131 471.5 319 73.4
AL5G16240 Arabidopsis lyrata HOM05D005629 ORTHO05D008000 1.6e-130 469.9 304 78.0
Psat3g164800 Pisum sativum HOM05D005629 ORTHO05D008000 1.6e-130 469.9 325 73.2
SGA_v2.0_scaffold253G45198 Striga asiatica HOM05D005629 ORTHO05D008000 1.6e-130 469.9 314 75.8
Carub.0005s0536 Capsella rubella HOM05D005629 ORTHO05D008000 2.0e-130 469.5 304 77.6
Gohir.A07G228100 Gossypium hirsutum HOM05D005629 ORTHO05D008000 2.0e-130 469.5 323 72.8
BcaC06g31019 Brassica carinata HOM05D005629 ORTHO05D008000 3.5e-130 468.8 305 77.4
BcaC06g33857 Brassica carinata HOM05D005629 ORTHO05D008000 3.5e-130 468.8 305 77.4
Cpa.g.sc171.18 Carica papaya HOM05D005629 ORTHO05D008000 5.9e-130 468.0 292 77.7
Sp2g16240 Schrenkiella parvula HOM05D005629 ORTHO05D008000 5.9e-130 468.0 290 80.3
unitig_52.g17654 Utricularia gibba HOM05D005629 ORTHO05D008000 5.9e-130 468.0 273 83.5
Gorai.007G073600 Gossypium raimondii HOM05D005629 ORTHO05D008000 7.7e-130 467.6 323 72.4
Sed0004120 Sechium edule HOM05D005629 ORTHO05D008000 1.0e-129 467.2 290 77.9
TPR.G38340 Trifolium pratense HOM05D005629 ORTHO05D008000 1.0e-129 467.2 322 75.5
Phvul.001G094100 Phaseolus vulgaris HOM05D005629 ORTHO05D008000 1.3e-129 466.8 326 71.5
Oeu058781.1 Olea europaea HOM05D005629 ORTHO05D008000 2.9e-129 465.7 312 77.9
PGR142G0641 Punica granatum HOM05D005629 ORTHO05D008000 3.8e-129 465.3 321 74.8
THA.LOC104825621 Tarenaya hassleriana HOM05D005629 ORTHO05D008000 6.6e-129 464.5 300 76.7
Ah.02g120470 Amaranthus hybridus HOM05D005629 ORTHO05D008000 8.6e-129 464.2 329 72.0
BcaC06g33860 Brassica carinata HOM05D005629 ORTHO05D008000 8.6e-129 464.2 305 76.4
ATR0561G239 Amborella trichopoda HOM05D005629 ORTHO05D008000 1.1e-128 463.8 325 71.7
AT3G27110 Arabidopsis thaliana HOM05D005629 ORTHO05D008000 1.1e-128 463.8 304 77.0
A06p41480 Brassica napus HOM05D005629 ORTHO05D008000 1.1e-128 463.8 316 74.7
CsaV3_3G027030 Cucumis sativus L. HOM05D005629 ORTHO05D008000 1.1e-128 463.8 280 78.6
Potri.001G330800 Populus trichocarpa HOM05D005629 ORTHO05D008000 1.1e-128 463.8 333 73.0
BraA06t27073Z Brassica rapa HOM05D005629 ORTHO05D008000 1.5e-128 463.4 305 76.4
C07p36170 Brassica napus HOM05D005629 ORTHO05D008000 1.9e-128 463.0 305 76.4
Medtr7g033405 Medicago truncatula HOM05D005629 ORTHO05D008000 1.9e-128 463.0 336 71.1
BolC7t44133H Brassica oleracea HOM05D005629 ORTHO05D008000 2.5e-128 462.6 305 76.1
Thhalv10004520m.g Eutrema salsugineum HOM05D005629 ORTHO05D008000 9.5e-128 460.7 290 79.0
Aa31LG2G5490 Aethionema arabicum HOM05D005629 ORTHO05D008000 1.4e-126 456.8 288 78.8
Os01g0970700 Oryza sativa ssp. japonica HOM05D005629 ORTHO05D008000 1.5e-125 453.4 278 80.9
Sabra16G0211800 Salix brachista HOM05D005629 ORTHO05D008000 1.5e-125 453.4 298 77.5
vmacro05954 Vaccinium macrocarpon HOM05D005629 ORTHO05D008000 2.0e-125 453.0 321 72.9
Rhsim10G0006600 Rhododendron simsii HOM05D005629 ORTHO05D008000 3.4e-125 452.2 323 72.8
Zm00001eb127160 Zea mays HOM05D005629 ORTHO05D008000 6.3e-124 448.0 288 77.8
HPP92_024304 Vanilla planifolia HOM05D005629 ORTHO05D008000 7.8e-122 441.0 275 77.1
HPP92_024293 Vanilla planifolia HOM05D005629 ORTHO05D008000 1.3e-121 440.3 274 77.4
Mapoly0033s0112 Marchantia polymorpha HOM05D005629 ORTHO05D008000 2.9e-121 439.1 283 76.0
Duzib264G0865 Durio zibethinus HOM05D005629 ORTHO05D008000 3.9e-121 438.7 322 69.9
Migut.H00778 Erythranthe guttata HOM05D005629 ORTHO05D008000 7.3e-120 434.5 262 82.4
SEGI_10761 Sequoiadendron giganteum HOM05D005629 ORTHO05D008000 7.3e-120 434.5 292 73.6
Hund04337 Selenicereus undatus HOM05D005629 ORTHO05D008000 1.4e-115 420.2 374 61.5
Migut.K01513 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.5e-109 400.2 273 76.6
Nn4g22342 Nelumbo nucifera HOM05D005629 ORTHO05D008000 3.7e-108 395.6 312 68.3
Dinv25662 Davidia involucrata HOM05D005629 ORTHO05D000552 7.8e-106 387.9 211 90.5
AUR62003511 Chenopodium quinoa HOM05D005629 ORTHO05D008000 8.1e-103 377.9 250 75.2
Gorai.004G126700 Gossypium raimondii HOM05D005629 ORTHO05D008000 5.2e-102 375.2 237 78.1
Gohir.D08G117950 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.1e-99 367.5 235 77.0
AUR62017822 Chenopodium quinoa HOM05D005629 ORTHO05D008000 1.6e-98 363.6 235 77.0
Migut.G01029 Erythranthe guttata HOM05D005629 ORTHO05D008000 2.1e-98 363.2 244 77.5
Cre14.g620150 Chlamydomonas reinhardtii HOM05D005629 ORTHO05D008000 2.5e-96 356.3 267 63.7
MCO03G471 Micromonas commoda HOM05D005629 ORTHO05D008000 3.6e-95 352.4 261 64.8
AagrBONN_evm.TU.Sc2ySwM_117.2248 Anthoceros agrestis HOM05D005629 ORTHO05D008000 1.3e-92 344.0 204 80.9
FAN05G5024 Fragaria x ananassa HOM05D005629 ORTHO05D008000 2.2e-92 343.2 229 75.5
Manes.15G160600 Manihot esculenta HOM05D005629 ORTHO05D008000 8.4e-92 341.3 233 75.1
FAN02G3075 Fragaria x ananassa HOM05D005629 ORTHO05D008000 4.6e-90 335.5 237 72.6
MELO3C014882.2 Cucumis melo HOM05D005629 ORTHO05D008000 4.4e-85 318.9 246 65.9
CARHR148330 Cardamine hirsuta HOM05D005629 ORTHO05D008000 4.9e-84 315.5 213 72.8
FAN14G4117 Fragaria x ananassa HOM05D005629 ORTHO05D008000 7.8e-82 308.1 293 58.7
PRCOL_00001739 Prasinoderma coloniale HOM05D005629 ORTHO05D008000 3.1e-78 296.2 270 54.8
Lsat_1_v5_gn_9_1240 Lactuca sativa HOM05D005629 ORTHO05D008000 7.6e-77 291.6 159 90.6
CDE05G1086 Ceratophyllum demersum HOM05D001132 ORTHO05D002510 1.0e-68 264.6 186 71.0
Zm00001eb202540 Zea mays HOM05D002249 ORTHO05D002443 5.0e-60 235.7 204 60.8
Migut.K01251 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.5e-56 224.2 159 73.6
FvH4_6g53390 Fragaria vesca HOM05D005629 ORTHO05D022663 5.0e-52 209.1 280 45.0
FvH4_6g53350 Fragaria vesca HOM05D005629 ORTHO05D022663 7.2e-51 205.3 316 42.4
TAR622G1261 Trochodendron aralioides HOM05D005629 ORTHO05D008000 7.9e-50 201.8 119 84.9
Zm00001eb174780 Zea mays HOM05D005629 ORTHO05D008000 1.8e-49 200.7 129 76.7
Zm00001eb427710 Zea mays HOM05D005629 ORTHO05D003422 2.3e-49 200.3 116 81.9
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 1.1e-46 191.4 116 80.2
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 4.5e-45 186.0 127 72.4
FvH4_6g53420 Fragaria vesca HOM05D005629 ORTHO05D022663 7.7e-45 185.3 239 46.9
FAN14G1519 Fragaria x ananassa HOM05D005629 ORTHO05D022663 2.1e-34 150.6 290 36.6
CDE02G4678 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 6.1e-34 149.1 234 41.9
FAN02G3684 Fragaria x ananassa HOM05D005629 ORTHO05D008000 3.3e-32 143.3 82 84.1
arahy.Tifrunner.gnm1.ann1.0H9GWB Arachis hypogaea HOM05D005629 ORTHO05D008000 3.2e-27 126.7 76 80.3
PRCOL_00005410 Prasinoderma coloniale HOM05D005629 ORTHO05D333266 3.2e-27 126.7 282 33.3
MELO3C032122.2 Cucumis melo HOM05D005629 ORTHO05D008000 4.2e-27 126.3 63 92.1
Zm00001eb048250 Zea mays HOM05D005629 ORTHO05D008000 8.0e-26 122.1 84 72.6
Lsat_1_v5_gn_0_46360 Lactuca sativa HOM05D005629 ORTHO05D008000 7.5e-24 115.5 85 71.8
AagrBONN_evm.TU.Sc2ySwM_228.873 Anthoceros agrestis HOM05D005629 ORTHO05D008000 1.1e-22 111.7 271 30.6
FAN02G2357 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.9e-19 100.9 107 49.5
A02p35090 Brassica napus HOM05D005629 ORTHO05D008000 8.8e-17 92.0 81 64.2
BraA02t08515Z Brassica rapa HOM05D005629 ORTHO05D008000 1.7e-15 87.8 77 63.6
FvH4_6g53460 Fragaria vesca HOM05D005629 ORTHO05D022663 1.2e-10 71.6 138 37.7
CAN.G792.7 Capsicum annuum HOM05D002518 ORTHO05D002630 8.9e-09 65.5 43 74.4
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 5.7e-08 62.8 59 61.0
BolC2t11443H Brassica oleracea HOM05D005629 ORTHO05D008000 2.2e-07 60.8 53 64.2
FvH4_6g53450 Fragaria vesca HOM05D005629 ORTHO05D008000 3.7e-07 60.1 49 65.3
FvH4_6g53451 Fragaria vesca HOM05D005629 ORTHO05D196308 4.9e-07 59.7 74 45.9


User provided reference genes

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