Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 6.6e-84 313.9 152 100.0
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 7.6e-64 247.3 153 79.7
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 5.0e-63 244.6 155 78.1
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 5.0e-63 244.6 151 80.1
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 8.5e-63 243.8 152 78.9
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 1.1e-62 243.4 152 80.3
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 1.1e-62 243.4 152 79.6
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 5.5e-62 241.1 146 80.1
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 7.2e-62 240.7 152 78.9
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 7.2e-62 240.7 152 78.3
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 9.3e-62 240.4 153 79.1
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 2.7e-61 238.8 150 78.7
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 4.6e-61 238.0 152 75.7
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 7.9e-61 237.3 152 76.3
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 1.8e-60 236.1 127 86.6
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 2.3e-60 235.7 152 77.0
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 2.3e-60 235.7 152 76.3
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 2.3e-60 235.7 152 76.3
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 3.9e-60 235.0 152 77.6
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 5.1e-60 234.6 152 75.0
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 6.7e-60 234.2 128 84.4
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 8.7e-60 233.8 152 75.7
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.1e-59 233.4 145 77.9
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.1e-59 233.4 150 78.7
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 1.1e-59 233.4 120 89.2
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 1.1e-59 233.4 120 89.2
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 1.5e-59 233.0 140 80.7
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 1.5e-59 233.0 152 74.3
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 1.9e-59 232.6 146 77.4
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 1.9e-59 232.6 144 77.8
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 2.5e-59 232.3 154 74.0
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 2.5e-59 232.3 128 85.2
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 3.3e-59 231.9 127 84.3
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 3.3e-59 231.9 140 79.3
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 4.3e-59 231.5 150 77.3
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 4.3e-59 231.5 145 77.2
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 5.7e-59 231.1 141 77.3
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 5.7e-59 231.1 140 81.4
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 5.7e-59 231.1 126 85.7
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 7.4e-59 230.7 135 80.7
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 9.7e-59 230.3 135 80.0
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 1.3e-58 229.9 128 83.6
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 1.3e-58 229.9 152 75.0
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 1.3e-58 229.9 141 77.3
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 1.6e-58 229.6 127 83.5
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 1.6e-58 229.6 148 75.0
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 1.6e-58 229.6 152 73.7
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 1.6e-58 229.6 147 78.2
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 2.2e-58 229.2 147 75.5
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 2.8e-58 228.8 148 74.3
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 2.8e-58 228.8 160 72.5
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 3.7e-58 228.4 152 76.3
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 3.7e-58 228.4 147 76.2
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 3.7e-58 228.4 170 68.8
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 3.7e-58 228.4 161 72.0
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 8.2e-58 227.3 128 84.4
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 8.2e-58 227.3 151 73.5
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 1.1e-57 226.9 145 74.5
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 1.4e-57 226.5 140 79.3
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 1.4e-57 226.5 140 79.3
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 1.4e-57 226.5 150 74.0
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 1.4e-57 226.5 137 79.6
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 1.4e-57 226.5 120 86.7
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 1.8e-57 226.1 140 78.6
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 2.4e-57 225.7 146 74.0
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 3.1e-57 225.3 144 77.8
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 3.1e-57 225.3 144 78.5
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 3.1e-57 225.3 132 78.8
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 3.1e-57 225.3 132 78.8
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 5.3e-57 224.6 154 74.0
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 6.9e-57 224.2 142 77.5
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 6.9e-57 224.2 154 74.7
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 6.9e-57 224.2 140 76.4
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 9.0e-57 223.8 135 77.0
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 9.0e-57 223.8 151 74.2
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 1.2e-56 223.4 152 72.4
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 1.2e-56 223.4 118 86.4
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 1.5e-56 223.0 145 72.4
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 2.0e-56 222.6 150 73.3
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 2.0e-56 222.6 149 73.2
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 2.6e-56 222.2 151 68.9
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 2.6e-56 222.2 140 75.7
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 1.0e-55 220.3 157 72.0
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 2.2e-55 219.2 120 81.7
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 3.8e-55 218.4 151 72.2
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 6.5e-55 217.6 116 85.3
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 6.5e-55 217.6 151 71.5
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 1.1e-54 216.9 146 72.6
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 1.4e-54 216.5 115 83.5
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 2.5e-54 215.7 151 68.2
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 2.5e-54 215.7 151 68.2
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 3.2e-54 215.3 125 76.0
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 4.2e-54 214.9 131 78.6
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 9.4e-54 213.8 126 76.2
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 3.6e-53 211.8 137 75.2
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 4.6e-53 211.5 112 83.9
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 6.1e-53 211.1 130 76.9
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 6.1e-53 211.1 137 74.5
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 1.8e-52 209.5 160 65.0
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 3.0e-52 208.8 114 81.6
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 3.9e-52 208.4 150 68.0
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 5.1e-52 208.0 124 75.8
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.1e-51 206.8 141 71.6
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.1e-51 206.8 141 71.6
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.5e-51 206.5 141 71.6
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 2.0e-51 206.1 135 73.3
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 2.6e-51 205.7 135 74.8
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 9.7e-51 203.8 149 67.1
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 3.7e-50 201.8 151 67.5
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 8.2e-50 200.7 139 66.9
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 3.1e-49 198.7 118 72.0
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.2e-48 196.8 177 58.8
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 1.3e-47 193.4 105 83.8
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 2.2e-47 192.6 104 80.8
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 6.5e-47 191.0 104 79.8
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 1.1e-46 190.3 135 65.2
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.5e-46 189.1 157 65.0
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 4.7e-45 184.9 161 63.4
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 1.5e-43 179.9 91 84.6
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 2.6e-43 179.1 153 61.4
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 6.3e-42 174.5 155 60.0
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 1.1e-41 173.7 115 78.3
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 4.1e-41 171.8 100 80.0
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 2.9e-39 165.6 115 71.3
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 1.6e-37 159.8 80 90.0
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 6.1e-37 157.9 117 68.4
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 5.7e-35 151.4 78 82.1
Atru.chr8.2413 Acer truncatum HOM05D005035 ORTHO05D006141 9.7e-35 150.6 152 57.2
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 2.7e-32 142.5 88 76.1
AUR62026990 Chenopodium quinoa HOM05D005035 ORTHO05D006141 5.7e-27 124.8 104 58.7
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 8.3e-26 120.9 153 47.7
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 3.1e-25 119.0 61 83.6
Gohir.D09G023800 Gossypium hirsutum HOM05D005035 ORTHO05D006141 9.1e-25 117.5 90 73.3
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 6.1e-21 104.8 316 29.1
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 4.4e-19 98.6 71 60.6
BcaC04g21225 Brassica carinata HOM05D005035 ORTHO05D006141 6.3e-18 94.7 52 80.8
vmacro18227 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 2.7e-16 89.4 79 67.1
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 7.3e-14 81.3 52 67.3
QL02p078176 Quercus lobata HOM05D005035 ORTHO05D006141 1.0e-12 77.4 65 63.1
CSS0020716 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 6.4e-10 68.2 40 70.0
Nn1g06334 Nelumbo nucifera HOM05D005035 ORTHO05D006141 6.4e-10 68.2 37 86.5
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.1e-09 67.4 49 65.3
CARHR102660 Cardamine hirsuta HOM05D005035 ORTHO05D006141 2.4e-09 66.2 42 71.4
Dinv33674 Davidia involucrata HOM05D005035 ORTHO05D006141 3.5e-08 62.4 41 73.2
CSS0011814 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.9e-06 56.6 30 73.3


User provided reference genes

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