Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 5.8e-141 504.2 256 100.0
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 5.6e-75 285.0 210 69.0
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.2e-74 283.9 211 67.8
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.2e-74 283.9 211 67.8
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 2.3e-73 279.6 190 71.6
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 8.9e-73 277.7 206 65.5
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 1.2e-72 277.3 240 60.0
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 1.2e-72 277.3 240 60.0
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 2.0e-72 276.6 190 70.5
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 5.8e-72 275.0 207 64.7
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 2.9e-71 272.7 195 68.2
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 2.9e-71 272.7 195 66.7
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 6.4e-71 271.6 209 64.1
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 1.1e-70 270.8 201 66.7
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 1.4e-70 270.4 238 59.7
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 5.4e-70 268.5 196 66.8
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.2e-69 267.3 211 62.6
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 2.7e-69 266.2 195 67.2
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 4.6e-69 265.4 214 61.7
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 6.0e-69 265.0 232 59.1
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 6.0e-69 265.0 195 65.6
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 1.0e-68 264.2 193 64.8
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 1.0e-68 264.2 193 64.8
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 1.0e-68 264.2 193 64.8
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.3e-68 263.8 237 56.5
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 1.7e-68 263.5 241 56.0
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 2.3e-68 263.1 244 56.1
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 1.5e-67 260.4 193 64.8
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 1.6e-66 256.9 208 61.5
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 4.7e-66 255.4 218 57.3
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 8.1e-66 254.6 194 64.9
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 8.1e-66 254.6 253 54.5
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.1e-65 254.2 194 63.9
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 3.1e-65 252.7 194 64.4
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 4.0e-65 252.3 190 64.7
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 6.8e-65 251.5 237 57.0
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 8.9e-65 251.1 209 62.2
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 1.5e-64 250.4 195 63.6
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 2.0e-64 250.0 194 63.9
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 2.0e-64 250.0 194 63.9
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 2.6e-64 249.6 225 57.8
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 5.8e-64 248.4 194 63.4
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 9.9e-64 247.7 194 63.4
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 9.9e-64 247.7 194 63.4
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 1.7e-63 246.9 194 63.4
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 1.7e-63 246.9 211 57.3
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 1.7e-63 246.9 205 59.0
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 1.1e-62 244.2 194 62.4
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 9.2e-62 241.1 204 60.3
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 1.6e-61 240.4 195 59.5
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 3.5e-61 239.2 181 63.0
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 3.5e-61 239.2 192 61.5
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 2.3e-60 236.5 212 55.2
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 6.6e-60 235.0 190 62.1
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 1.2e-58 230.7 213 54.5
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 2.1e-58 229.9 213 54.5
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 2.8e-58 229.6 213 54.5
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 2.8e-58 229.6 172 64.0
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 6.2e-58 228.4 213 54.5
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 6.2e-58 228.4 213 54.5
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 1.1e-57 227.6 213 54.0
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 1.1e-57 227.6 203 56.2
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 1.4e-57 227.3 210 54.3
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 2.4e-57 226.5 229 52.8
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 4.0e-57 225.7 202 56.9
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 6.8e-57 224.9 188 59.0
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 1.5e-56 223.8 208 53.4
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 4.4e-56 222.2 190 57.4
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 5.8e-56 221.9 213 52.1
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 5.8e-56 221.9 216 52.8
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 1.3e-55 220.7 208 53.8
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 9.2e-54 214.5 193 58.0
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 6.0e-53 211.8 208 55.3
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 3.9e-52 209.1 236 47.9
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 8.7e-52 208.0 252 43.7
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 1.1e-51 207.6 226 51.8
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 1.5e-51 207.2 234 47.9
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 3.3e-51 206.1 234 47.9
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 3.6e-50 202.6 222 45.5
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 3.6e-50 202.6 188 49.5
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.1e-49 201.1 233 45.5
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.4e-49 200.7 233 46.4
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 2.4e-49 199.9 190 52.1
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 1.5e-48 197.2 214 46.7
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 2.6e-48 196.4 156 61.5
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 7.6e-48 194.9 197 48.7
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 2.9e-47 193.0 151 61.6
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 4.9e-47 192.2 190 48.9
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 1.1e-46 191.0 197 48.2
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 9.3e-46 188.0 209 50.7
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 7.8e-45 184.9 190 52.6
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 1.3e-44 184.1 144 62.5
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 1.3e-44 184.1 135 65.9
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 1.7e-44 183.7 191 52.4
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 5.1e-44 182.2 144 62.5
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 1.5e-43 180.6 230 42.2
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 2.5e-43 179.9 137 65.7
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 9.6e-43 177.9 190 48.9
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 1.1e-41 174.5 193 44.0
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 1.4e-41 174.1 232 40.9
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 4.0e-41 172.6 194 43.8
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 6.9e-41 171.8 190 43.2
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 9.0e-41 171.4 190 42.1
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 1.5e-40 170.6 190 44.7
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 3.4e-40 169.5 191 42.4
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 3.4e-40 169.5 263 39.9
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 7.6e-40 168.3 194 44.8
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 9.9e-40 167.9 195 43.1
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 1.7e-39 167.2 191 41.9
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 2.2e-39 166.8 137 60.6
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 3.8e-39 166.0 193 43.0
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 1.1e-38 164.5 192 40.6
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 1.4e-38 164.1 195 42.6
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 2.4e-38 163.3 191 46.6
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 4.6e-37 159.1 158 50.0
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 3.9e-36 156.0 194 42.3
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 5.1e-36 155.6 174 46.6
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 8.7e-36 154.8 199 41.2
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 8.7e-36 154.8 192 43.2
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.9e-35 153.7 174 49.4
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 7.4e-35 151.8 193 43.0
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 2.8e-34 149.8 183 41.0
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 3.7e-34 149.4 200 36.5
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.8e-33 147.1 188 42.0
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 5.3e-33 145.6 98 71.4
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 7.6e-32 141.7 189 40.2
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 2.2e-31 140.2 228 35.5
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 4.9e-31 139.0 190 36.8
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.1e-30 137.9 189 39.7
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.1e-30 137.9 205 38.5
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 1.4e-30 137.5 226 35.4
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 1.9e-30 137.1 194 39.2
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 3.2e-30 136.3 188 39.9
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 7.1e-30 135.2 184 38.6
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 9.3e-30 134.8 190 40.0
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 1.6e-29 134.0 139 46.8
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 3.0e-28 129.8 190 34.7
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 5.1e-28 129.0 194 35.6
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 2.5e-27 126.7 191 34.0
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 2.1e-26 123.6 199 34.7
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 4.8e-26 122.5 188 38.3
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 8.2e-26 121.7 216 32.4
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 1.1e-25 121.3 196 37.8
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.8e-25 120.6 188 36.2
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 4.0e-25 119.4 192 33.3
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.2e-23 113.6 201 34.8
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 2.5e-22 110.2 80 65.0
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 5.5e-22 109.0 195 33.8
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 6.0e-21 105.5 103 52.4
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 7.9e-21 105.1 103 52.4
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 3.3e-19 99.8 175 32.0
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 3.7e-18 96.3 143 37.1
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 3.7e-18 96.3 109 45.0
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 4.6e-13 79.3 75 53.3
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 2.3e-12 77.0 243 30.0
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 5.7e-11 72.4 189 25.9
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 1.3e-10 71.2 80 50.0
Aa31LG9G16510 Aethionema arabicum HOM05D004214 ORTHO05D004963 2.2e-10 70.5 71 54.9
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 3.7e-10 69.7 164 29.9
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 4.8e-10 69.3 84 48.8
BolC9t55376H Brassica oleracea HOM05D004214 ORTHO05D004963 5.3e-09 65.9 69 47.8
BraA07t29702Z Brassica rapa HOM05D004214 ORTHO05D004963 2.9e-07 60.1 72 48.6
Os10g0580600 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.1e-06 58.2 49 57.1
CBR_g46605 Chara braunii HOM05D004214 ORTHO05D004963 5.5e-06 55.8 119 31.1


User provided reference genes

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