Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 9.6e-207 723.4 401 100.0
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 1.5e-188 662.9 401 91.8
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 3.6e-145 518.8 413 72.9
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 3.0e-144 515.8 413 73.1
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.3e-139 500.4 412 71.8
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 1.1e-138 497.3 413 71.7
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.5e-138 496.1 412 71.4
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.7e-134 483.4 411 70.6
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 3.7e-134 482.3 412 70.9
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 1.8e-133 479.9 413 69.2
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 3.5e-132 475.7 412 69.7
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 4.3e-130 468.8 413 67.8
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 2.1e-129 466.5 410 69.3
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 2.8e-129 466.1 412 67.5
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 3.1e-128 462.6 408 66.9
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.0e-127 459.9 411 67.2
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 4.4e-127 458.8 417 67.1
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 5.8e-127 458.4 411 67.2
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 7.5e-127 458.0 412 67.0
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 9.8e-127 457.6 412 67.7
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 2.2e-126 456.4 425 64.9
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 8.3e-126 454.5 414 66.2
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 2.4e-125 453.0 412 66.5
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 3.5e-124 449.1 418 64.8
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 6.0e-124 448.4 414 65.5
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 1.7e-123 446.8 412 65.5
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 3.9e-123 445.7 410 65.1
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 8.6e-123 444.5 416 65.9
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 3.3e-122 442.6 412 64.6
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 1.2e-121 440.7 414 63.5
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 1.2e-121 440.7 412 63.8
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 1.6e-121 440.3 412 64.6
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 6.2e-121 438.3 425 62.1
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 2.3e-120 436.4 412 67.0
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 3.1e-120 436.0 413 62.7
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 1.2e-119 434.1 412 64.1
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 7.5e-119 431.4 408 65.4
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 9.8e-119 431.0 413 64.4
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 2.2e-118 429.9 406 64.3
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 4.9e-118 428.7 409 63.3
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 1.1e-117 427.6 412 64.3
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 1.1e-117 427.6 413 63.7
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 1.1e-117 427.6 411 65.7
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 1.4e-117 427.2 413 63.4
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 3.2e-117 426.0 420 62.9
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 5.4e-117 425.2 414 63.0
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 9.2e-117 424.5 414 64.0
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 1.6e-116 423.7 408 63.0
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 2.7e-116 422.9 408 63.0
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 3.5e-116 422.5 414 64.3
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 4.6e-116 422.2 417 61.9
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 6.0e-116 421.8 413 63.0
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 1.3e-115 420.6 353 67.7
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 3.9e-115 419.1 425 61.2
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 1.5e-114 417.2 408 62.5
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.9e-114 416.8 332 70.8
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 3.3e-114 416.0 413 61.0
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 3.3e-114 416.0 418 62.0
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 4.3e-114 415.6 353 67.4
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 1.6e-113 413.7 404 63.4
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 1.6e-113 413.7 411 62.0
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 2.1e-113 413.3 353 67.1
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 2.1e-113 413.3 434 61.8
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 2.8e-113 412.9 412 62.9
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 4.7e-113 412.1 411 61.1
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 4.7e-113 412.1 415 63.1
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 6.2e-113 411.8 419 62.1
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 1.4e-112 410.6 412 62.6
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 1.8e-112 410.2 412 62.6
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 4.0e-112 409.1 412 62.9
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 5.2e-112 408.7 411 59.4
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 5.8e-111 405.2 411 60.3
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 9.9e-111 404.4 409 61.1
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 9.9e-111 404.4 429 60.6
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 2.9e-110 402.9 410 60.7
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 3.8e-110 402.5 401 61.3
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 1.4e-109 400.6 402 60.9
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 1.9e-109 400.2 339 68.1
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 1.6e-108 397.1 410 60.0
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 1.6e-108 397.1 404 62.1
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 1.6e-108 397.1 404 61.6
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 6.0e-108 395.2 430 58.1
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 1.0e-107 394.4 404 61.4
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 1.5e-106 390.6 411 59.6
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 7.3e-106 388.3 412 59.0
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 3.6e-105 386.0 401 59.9
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 6.9e-104 381.7 401 59.4
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.2e-103 380.9 409 58.7
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 1.5e-103 380.6 413 58.6
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.0e-103 380.2 407 58.5
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.0e-103 380.2 401 59.4
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.4e-103 379.4 404 59.7
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 5.8e-103 378.6 406 60.3
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 2.2e-102 376.7 414 57.7
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 6.4e-102 375.2 390 59.7
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 6.4e-102 375.2 335 62.7
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 9.3e-101 371.3 435 57.2
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 4.6e-100 369.0 444 53.6
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 4.6e-100 369.0 438 54.6
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 1.0e-99 367.9 336 61.6
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 2.3e-99 366.7 410 56.6
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 5.1e-99 365.5 324 66.4
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 3.3e-98 362.8 438 54.1
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 5.6e-98 362.1 433 53.6
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 4.0e-96 355.9 438 53.9
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 1.5e-95 354.0 318 65.7
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 2.0e-95 353.6 428 54.9
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 2.0e-95 353.6 428 54.9
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 2.6e-95 353.2 419 57.0
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 1.7e-94 350.5 439 53.1
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 2.9e-94 349.7 346 61.6
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 3.8e-94 349.4 407 54.1
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 8.4e-94 348.2 443 52.6
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 3.2e-93 346.3 427 54.3
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 2.7e-92 343.2 419 54.9
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 1.8e-91 340.5 415 52.0
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 8.7e-91 338.2 352 62.5
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 2.8e-89 333.2 363 57.6
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 8.1e-89 331.6 334 61.1
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 9.9e-87 324.7 446 50.7
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 6.7e-83 312.0 359 54.6
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 1.1e-82 311.2 342 59.1
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 5.6e-82 308.9 408 51.7
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 1.9e-77 293.9 419 47.3
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 6.7e-75 285.4 336 51.5
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 4.3e-74 282.7 349 53.0
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 6.9e-72 275.4 400 50.2
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 1.7e-70 270.8 367 49.0
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.2e-70 270.4 240 66.2
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 3.0e-67 260.0 369 48.8
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 9.7e-58 228.4 368 45.1
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 2.2e-57 227.3 293 53.2
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 1.5e-55 221.1 231 61.0
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 4.7e-52 209.5 208 59.6
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 1.7e-46 191.0 336 44.6
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 1.5e-45 188.0 206 58.3
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 4.2e-45 186.4 288 44.4
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 1.2e-44 184.9 242 47.1
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 7.5e-42 175.6 167 55.1
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 9.7e-42 175.3 377 39.3
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 4.1e-40 169.9 265 47.2
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 4.1e-40 169.9 265 47.2
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 1.3e-38 164.9 383 39.2
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 1.7e-38 164.5 353 41.6
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 6.8e-35 152.5 102 73.5
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 2.2e-33 147.5 390 36.9
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.4e-32 144.8 223 46.2
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 2.9e-30 137.1 207 41.5
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 6.5e-30 136.0 109 67.0
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 8.6e-22 109.0 152 55.3
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 1.9e-21 107.8 245 31.8
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 1.0e-19 102.1 122 61.5
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 8.9e-11 72.4 220 26.4
Lsat_1_v5_gn_8_95180 Lactuca sativa HOM05D004552 ORTHO05D005501 2.0e-07 61.2 73 58.9
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 6.6e-06 56.2 203 36.0


User provided reference genes

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