Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 1.9e-83 312.4 149 100.0
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 2.1e-21 106.3 145 45.5
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 7.8e-21 104.4 153 43.8
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 1.3e-20 103.6 134 49.3
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 1.3e-20 103.6 144 43.8
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 1.7e-20 103.2 143 46.2
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 3.9e-20 102.1 142 45.1
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 6.6e-20 101.3 144 44.4
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 6.6e-20 101.3 146 43.2
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 2.5e-19 99.4 145 42.1
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 1.6e-18 96.7 141 41.8
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 2.8e-18 95.9 113 46.9
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 3.6e-18 95.5 142 43.0
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 4.8e-18 95.1 113 46.9
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 6.2e-18 94.7 143 43.4
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 6.2e-18 94.7 143 43.4
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 8.1e-18 94.4 143 43.4
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 1.1e-17 94.0 142 42.3
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 1.4e-17 93.6 127 42.5
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 2.4e-17 92.8 144 43.8
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 4.0e-17 92.0 142 40.8
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 5.3e-17 91.7 113 45.1
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 6.9e-17 91.3 145 43.4
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 5.8e-16 88.2 152 38.8
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 7.6e-16 87.8 112 43.8
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 7.6e-16 87.8 147 42.2
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 1.3e-15 87.0 145 39.3
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 1.7e-15 86.7 145 41.4
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 2.2e-15 86.3 147 40.1
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 2.2e-15 86.3 147 40.1
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 4.9e-15 85.1 145 40.0
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 8.4e-15 84.3 145 38.6
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 1.1e-14 84.0 141 40.4
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 1.1e-14 84.0 141 40.4
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 1.4e-14 83.6 146 39.7
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 2.4e-14 82.8 142 39.4
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 2.4e-14 82.8 133 41.4
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 3.2e-14 82.4 142 39.4
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 3.2e-14 82.4 142 39.4
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 3.2e-14 82.4 131 40.5
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 3.2e-14 82.4 140 40.7
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 4.2e-14 82.0 126 43.7
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 4.2e-14 82.0 146 39.0
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 4.2e-14 82.0 145 37.9
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 4.2e-14 82.0 145 40.0
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 5.4e-14 81.6 145 38.6
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 5.4e-14 81.6 146 41.1
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 9.3e-14 80.9 146 38.4
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.2e-13 80.5 132 42.4
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 1.6e-13 80.1 136 40.4
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 1.6e-13 80.1 145 37.2
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 1.6e-13 80.1 147 40.1
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 2.7e-13 79.3 129 44.2
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 3.5e-13 79.0 107 42.1
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.5e-13 79.0 103 46.6
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 3.5e-13 79.0 113 42.5
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 6.0e-13 78.2 108 44.4
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.0e-13 78.2 103 46.6
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.0e-13 78.2 103 46.6
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 6.0e-13 78.2 131 42.0
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 7.9e-13 77.8 146 37.0
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 7.9e-13 77.8 140 40.0
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 7.9e-13 77.8 58 62.1
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 7.9e-13 77.8 61 60.7
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 1.0e-12 77.4 121 40.5
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 1.0e-12 77.4 142 40.8
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 1.0e-12 77.4 133 39.8
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 1.0e-12 77.4 136 39.7
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 1.0e-12 77.4 111 42.3
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 1.3e-12 77.0 113 39.8
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.3e-12 77.0 149 39.6
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 1.8e-12 76.6 105 41.9
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 1.8e-12 76.6 113 41.6
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 1.8e-12 76.6 130 41.5
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 1.8e-12 76.6 122 39.3
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 2.3e-12 76.3 141 38.3
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 2.3e-12 76.3 113 41.6
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 2.3e-12 76.3 112 41.1
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 3.0e-12 75.9 135 39.3
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 3.0e-12 75.9 127 38.6
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 3.0e-12 75.9 120 41.7
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 3.9e-12 75.5 199 30.7
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 5.1e-12 75.1 145 37.9
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 5.1e-12 75.1 147 36.7
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 5.1e-12 75.1 133 39.1
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 6.7e-12 74.7 140 37.9
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 6.7e-12 74.7 143 37.8
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 6.7e-12 74.7 143 37.8
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 6.7e-12 74.7 143 37.8
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 8.7e-12 74.3 122 41.8
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.1e-11 73.9 151 38.4
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 1.9e-11 73.2 113 40.7
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 1.9e-11 73.2 126 38.9
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 1.9e-11 73.2 131 40.5
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 1.9e-11 73.2 136 36.8
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 2.5e-11 72.8 109 40.4
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 2.5e-11 72.8 113 43.4
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 3.3e-11 72.4 143 38.5
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 3.3e-11 72.4 102 45.1
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 5.6e-11 71.6 120 40.0
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 5.6e-11 71.6 120 40.0
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 5.6e-11 71.6 120 40.0
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 5.6e-11 71.6 142 38.0
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 5.6e-11 71.6 142 37.3
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 9.6e-11 70.9 112 42.0
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 1.3e-10 70.5 70 52.9
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 1.6e-10 70.1 127 37.0
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 1.6e-10 70.1 124 38.7
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 1.6e-10 70.1 128 36.7
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 2.1e-10 69.7 119 40.3
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 2.1e-10 69.7 142 37.3
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.1e-10 69.7 138 35.5
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 3.7e-10 68.9 131 35.1
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 4.8e-10 68.6 142 37.3
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 6.2e-10 68.2 149 34.2
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 6.2e-10 68.2 113 39.8
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.4e-09 67.0 113 36.3
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 1.8e-09 66.6 138 37.0
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 1.8e-09 66.6 111 40.5
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.8e-09 66.6 134 35.8
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 1.8e-09 66.6 113 36.3
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 3.1e-09 65.9 119 39.5
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 5.3e-09 65.1 126 39.7
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 9.0e-09 64.3 111 37.8
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 2.0e-08 63.2 151 34.4
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 2.6e-08 62.8 152 34.2
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 5.8e-08 61.6 144 34.7
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 7.6e-08 61.2 58 53.4
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 7.6e-08 61.2 58 53.4
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 7.6e-08 61.2 58 53.4
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 7.6e-08 61.2 155 32.9
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 7.6e-08 61.2 58 56.9
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 7.6e-08 61.2 58 56.9
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 9.9e-08 60.8 61 50.8
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 9.9e-08 60.8 58 53.4
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.3e-07 60.5 144 32.6
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 1.7e-07 60.1 144 34.0
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 2.2e-07 59.7 58 51.7
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 2.9e-07 59.3 58 53.4
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 2.9e-07 59.3 111 35.1
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 2.9e-07 59.3 58 53.4
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 6.4e-07 58.2 58 51.7
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 6.4e-07 58.2 58 51.7
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 8.4e-07 57.8 123 36.6
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 8.4e-07 57.8 119 38.7
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 1.4e-06 57.0 108 36.1
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 1.4e-06 57.0 47 61.7
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 2.4e-06 56.2 122 36.9
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 3.2e-06 55.8 47 61.7
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 4.2e-06 55.5 109 33.0
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 5.5e-06 55.1 118 34.7
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 7.1e-06 54.7 58 51.7
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 9.3e-06 54.3 121 32.2


User provided reference genes

Program Settings