Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 1.6e-238 828.9 401 100.0
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 3.2e-162 575.5 467 63.6
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 3.3e-159 565.5 410 67.6
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 1.7e-158 563.1 406 69.0
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 2.4e-157 559.3 430 66.3
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 1.6e-156 556.6 436 64.0
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 7.7e-156 554.3 413 65.9
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 1.5e-154 550.1 408 66.7
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 1.9e-154 549.7 408 66.4
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 3.2e-154 548.9 432 63.7
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 5.5e-154 548.1 390 69.0
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 5.5e-154 548.1 419 64.4
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 5.5e-154 548.1 432 63.7
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 7.2e-154 547.7 415 65.1
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 9.4e-154 547.4 406 65.5
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 1.2e-153 547.0 423 63.8
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 1.6e-153 546.6 426 64.3
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 3.6e-153 545.4 400 65.8
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 3.6e-153 545.4 407 65.6
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 8.0e-153 544.3 419 65.4
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 1.4e-152 543.5 413 64.6
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 2.3e-152 542.7 426 64.3
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 4.0e-152 542.0 400 65.5
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 8.8e-152 540.8 399 65.7
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 1.2e-151 540.4 425 65.9
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 1.2e-151 540.4 406 65.5
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 1.2e-151 540.4 417 64.3
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 2.0e-151 539.7 414 64.5
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 7.5e-151 537.7 407 64.6
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 1.3e-150 537.0 362 71.3
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 3.7e-150 535.4 428 62.9
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 4.8e-150 535.0 388 68.6
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 8.3e-150 534.3 432 63.4
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 1.8e-149 533.1 402 63.7
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 1.8e-149 533.1 398 67.8
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 2.4e-149 532.7 432 62.5
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 9.1e-149 530.8 404 64.1
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 1.6e-148 530.0 391 65.0
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 1.6e-148 530.0 401 64.6
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.6e-148 530.0 418 63.2
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 5.9e-148 528.1 432 61.6
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 5.9e-148 528.1 442 61.1
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 1.0e-147 527.3 406 65.0
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 1.3e-147 526.9 409 62.3
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 1.7e-147 526.6 437 62.7
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 6.5e-147 524.6 437 61.8
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 8.5e-147 524.2 436 60.1
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 1.1e-146 523.9 386 66.8
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 1.9e-146 523.1 418 62.2
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 2.5e-146 522.7 420 62.9
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 9.4e-146 520.8 427 62.1
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 1.2e-145 520.4 394 66.0
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 2.1e-145 519.6 422 61.4
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 3.6e-145 518.8 420 59.8
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 6.1e-145 518.1 389 65.0
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 6.1e-145 518.1 409 61.9
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 8.0e-145 517.7 433 61.7
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 2.3e-144 516.2 428 59.1
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 3.0e-144 515.8 461 58.4
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 3.0e-144 515.8 420 60.0
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 4.0e-144 515.4 357 70.0
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 4.0e-144 515.4 369 65.9
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 1.2e-143 513.8 427 59.3
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 1.2e-143 513.8 424 60.6
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 7.5e-143 511.1 426 59.6
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 7.5e-143 511.1 426 59.6
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 9.8e-143 510.8 430 58.6
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 2.2e-142 509.6 417 60.2
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 2.2e-142 509.6 440 58.6
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 2.2e-142 509.6 350 68.9
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 6.3e-142 508.1 441 58.5
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 1.4e-141 506.9 364 68.1
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 1.4e-141 506.9 416 61.1
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 2.4e-141 506.1 403 63.0
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 5.4e-141 505.0 430 60.7
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 1.6e-140 503.4 406 62.1
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 1.7e-139 500.0 422 60.9
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 3.8e-139 498.8 440 60.2
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 4.3e-138 495.4 414 60.9
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 5.6e-138 495.0 424 59.9
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 7.3e-138 494.6 401 60.1
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 1.4e-136 490.3 369 65.6
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 1.5e-135 486.9 358 67.0
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 3.2e-133 479.2 412 60.4
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 4.1e-133 478.8 416 59.9
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 7.0e-133 478.0 381 60.9
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 6.4e-126 454.9 347 62.0
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 8.6e-123 444.5 294 74.5
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 1.2e-121 440.7 430 55.8
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 1.1e-120 437.6 399 57.1
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 4.4e-119 432.2 347 61.1
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 3.7e-118 429.1 406 51.7
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 3.2e-117 426.0 307 67.8
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 5.1e-115 418.7 368 59.0
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 1.9e-114 416.8 357 55.5
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 1.7e-110 403.7 322 63.0
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 3.9e-107 392.5 324 61.1
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 3.9e-107 392.5 382 51.6
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 6.2e-105 385.2 340 54.4
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 4.4e-103 379.0 322 60.6
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 4.2e-101 372.5 341 53.1
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 6.0e-100 368.6 385 52.5
Eucgr.L01396 Eucalyptus grandis HOM05D006195 ORTHO05D007710 7.9e-92 341.7 255 65.5
Potri.004G034600 Populus trichocarpa HOM05D006195 ORTHO05D007710 9.3e-85 318.2 245 62.9
TPR.G37128 Trifolium pratense HOM05D006195 ORTHO05D007710 1.6e-81 307.4 180 80.0
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.0e-79 300.4 169 84.0
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.0e-79 300.4 169 84.0
HPP92_018057 Vanilla planifolia HOM05D006195 ORTHO05D007710 1.4e-77 294.3 297 51.2
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 2.3e-75 287.0 269 53.5
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 9.6e-74 281.6 390 40.5
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 1.3e-70 271.2 328 43.6
SalBow1G5137 Salvia bowleyana HOM05D006195 ORTHO05D007710 3.3e-66 256.5 146 82.9
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 3.2e-53 213.4 470 34.7
Dinv18994 Davidia involucrata HOM05D006195 ORTHO05D007710 3.9e-51 206.5 223 53.4
Manes.10G084901 Manihot esculenta HOM05D006195 ORTHO05D007710 1.8e-48 197.6 127 76.4
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.9e-45 187.6 101 85.1
PRCOL_00004057 Prasinoderma coloniale HOM05D006195 ORTHO05D007710 4.0e-43 179.9 301 36.5
SHI02125 Sapria himalayana HOM05D006195 ORTHO05D007710 7.0e-40 169.1 101 74.3
SalBow1G7985 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.0e-39 167.5 115 71.3
Nitab4.5_0003834g0010 Nicotiana tabacum HOM05D006195 ORTHO05D007710 7.2e-37 159.1 93 81.7
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 1.5e-34 151.4 141 55.3
SEGI_17138 Sequoiadendron giganteum HOM05D006195 ORTHO05D007710 6.1e-28 129.4 80 67.5
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 7.5e-26 122.5 80 68.8
SHI02124 Sapria himalayana HOM05D006195 ORTHO05D007710 1.2e-20 105.1 222 35.1
HPP92_018063 Vanilla planifolia HOM05D006195 ORTHO05D007710 4.0e-19 100.1 154 39.6
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 8.9e-19 99.0 100 53.0
AL117U10020 Arabidopsis lyrata HOM05D064442 ORTHO05D011622 7.0e-16 89.4 140 38.6
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 6.6e-14 82.8 100 44.0
CSS0013325 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 2.2e-09 67.8 74 45.9
Sc18g0004560 Simmondsia chinensis HOM05D003825 ORTHO05D004491 3.2e-08 63.9 231 23.4
Potri.009G115300 Populus trichocarpa HOM05D003825 ORTHO05D004491 1.2e-07 62.0 231 22.5
EL10Ac9g21730 Beta vulgaris HOM05D003825 ORTHO05D004491 2.0e-07 61.2 296 21.6
Nitab4.5_0000215g0100 Nicotiana tabacum HOM05D003825 ORTHO05D004491 2.7e-07 60.8 250 24.0
Lalb_Chr08g0246621 Lupinus albus HOM05D003825 ORTHO05D004491 4.6e-07 60.1 231 21.2
GSVIVG01031958001 Vitis vinifera HOM05D003825 ORTHO05D004491 7.8e-07 59.3 231 21.6
Hund06228 Selenicereus undatus HOM05D003825 ORTHO05D004491 1.0e-06 58.9 231 21.6
HPP92_013924 Vanilla planifolia HOM05D003825 ORTHO05D004491 1.0e-06 58.9 237 21.5
Cpa.g.sc62.142 Carica papaya HOM05D003825 ORTHO05D004491 1.3e-06 58.5 231 21.6
TAR628G0260 Trochodendron aralioides HOM05D003825 ORTHO05D004491 1.3e-06 58.5 229 21.4
HPP92_014010 Vanilla planifolia HOM05D003825 ORTHO05D004491 1.3e-06 58.5 237 21.1
Nitab4.5_0000557g0030 Nicotiana tabacum HOM05D003825 ORTHO05D004491 1.7e-06 58.2 254 22.0
Psat5g006200 Pisum sativum HOM05D003825 ORTHO05D004491 1.7e-06 58.2 231 21.2
TPR.G38203 Trifolium pratense HOM05D003825 ORTHO05D004491 1.7e-06 58.2 231 20.8
Ciclev10028655m.g Citrus clementina HOM05D003825 ORTHO05D004491 3.0e-06 57.4 231 21.6
Cc02_g17630 Coffea canephora HOM05D003825 ORTHO05D004491 3.0e-06 57.4 231 21.2
PSO675G6008 Papaver somniferum HOM05D003825 ORTHO05D004491 3.0e-06 57.4 225 21.8
Solyc01g109560.3 Solanum lycopersicum HOM05D003825 ORTHO05D004491 3.9e-06 57.0 233 21.5
Sopen01g051750 Solanum pennellii HOM05D003825 ORTHO05D004491 3.9e-06 57.0 233 21.5
PGSC0003DMG401000722 Solanum tuberosum HOM05D003825 ORTHO05D004491 3.9e-06 57.0 233 21.5
TAR381G1531 Trochodendron aralioides HOM05D003825 ORTHO05D004491 3.9e-06 57.0 231 20.8
A03p62930 Brassica napus HOM05D003825 ORTHO05D004491 5.0e-06 56.6 231 22.9
TAR376G0761 Trochodendron aralioides HOM05D003825 ORTHO05D004491 5.0e-06 56.6 237 21.5
arahy.Tifrunner.gnm1.ann1.53VILX Arachis hypogaea HOM05D003825 ORTHO05D004491 6.6e-06 56.2 231 20.8
arahy.Tifrunner.gnm1.ann1.SA4SRM Arachis hypogaea HOM05D003825 ORTHO05D004491 6.6e-06 56.2 231 20.8
Nitab4.5_0004172g0080 Nicotiana tabacum HOM05D003825 ORTHO05D004491 6.6e-06 56.2 231 22.1
CDE04G3403 Ceratophyllum demersum HOM05D003825 ORTHO05D004491 8.6e-06 55.8 237 21.9
RcHm_v2.0_Chr6g0264111 Rosa chinensis HOM05D003825 ORTHO05D004491 8.6e-06 55.8 231 21.2


User provided reference genes

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