Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 1.8e-193 679.1 341 100.0
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 1.9e-142 509.6 321 81.6
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 2.2e-135 486.1 304 78.0
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 2.2e-135 486.1 329 75.7
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 3.2e-134 482.3 334 74.6
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 5.4e-134 481.5 306 77.8
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.2e-133 480.3 319 75.9
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 1.2e-133 480.3 356 70.8
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.6e-133 479.9 305 78.4
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 2.7e-133 479.2 305 78.0
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 6.0e-133 478.0 305 78.4
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 7.8e-133 477.6 334 75.7
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 7.8e-133 477.6 325 76.3
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 1.3e-132 476.9 305 77.0
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.7e-132 476.5 308 76.3
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 2.3e-132 476.1 305 78.0
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 6.6e-132 474.6 305 78.0
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 8.6e-132 474.2 343 71.4
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.1e-131 473.8 319 75.5
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 1.5e-131 473.4 308 74.7
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 1.9e-131 473.0 306 77.1
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 2.5e-131 472.6 325 73.2
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 2.5e-131 472.6 305 77.7
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 3.3e-131 472.2 307 75.6
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 3.3e-131 472.2 319 74.9
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 3.3e-131 472.2 305 77.0
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 5.6e-131 471.5 332 73.5
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 5.6e-131 471.5 304 78.0
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 7.3e-131 471.1 307 75.2
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 9.5e-131 470.7 314 75.5
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 2.1e-130 469.5 305 76.7
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 3.6e-130 468.8 304 77.3
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 3.6e-130 468.8 327 74.0
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 6.2e-130 468.0 306 77.1
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 8.1e-130 467.6 324 71.9
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 8.1e-130 467.6 326 73.3
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 1.4e-129 466.8 333 71.2
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 2.3e-129 466.1 308 74.4
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 3.1e-129 465.7 334 70.7
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 3.1e-129 465.7 329 71.4
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 3.1e-129 465.7 305 74.4
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 5.2e-129 464.9 329 70.8
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 6.8e-129 464.5 305 75.4
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 8.9e-129 464.2 308 74.0
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.2e-128 463.8 333 71.5
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 1.5e-128 463.4 307 74.6
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 1.5e-128 463.4 360 68.3
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.5e-128 463.4 306 78.1
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 2.0e-128 463.0 329 73.3
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.0e-128 463.0 332 70.8
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 2.6e-128 462.6 306 76.5
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.6e-128 462.6 307 74.9
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 1.7e-127 459.9 305 74.4
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 2.2e-127 459.5 307 75.6
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 3.7e-127 458.8 338 70.4
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 4.9e-127 458.4 321 74.1
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 4.9e-127 458.4 330 71.5
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 1.4e-126 456.8 305 75.1
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.4e-126 456.1 304 74.3
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 3.2e-126 455.7 321 72.3
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 3.2e-126 455.7 338 69.5
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 4.1e-126 455.3 335 69.9
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 5.4e-126 454.9 329 70.5
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 7.1e-126 454.5 336 68.8
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 7.1e-126 454.5 329 70.8
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 7.1e-126 454.5 329 70.8
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 9.2e-126 454.1 315 72.1
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 1.2e-125 453.8 320 71.6
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 2.7e-125 452.6 336 68.5
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.7e-125 452.6 339 69.0
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 6.0e-125 451.4 356 67.7
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 7.8e-125 451.1 331 70.1
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 7.8e-125 451.1 330 70.6
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 7.8e-125 451.1 310 72.9
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 1.3e-124 450.3 340 69.1
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 1.3e-124 450.3 305 73.8
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.7e-124 449.9 307 73.3
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 1.7e-124 449.9 330 70.0
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 3.0e-124 449.1 334 68.3
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 3.9e-124 448.7 338 68.9
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 3.9e-124 448.7 330 70.3
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 5.1e-124 448.4 305 73.4
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 6.6e-124 448.0 328 68.9
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 8.6e-124 447.6 307 72.0
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 8.6e-124 447.6 304 73.7
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 1.5e-123 446.8 340 68.8
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 1.9e-123 446.4 345 65.2
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.9e-123 446.4 305 72.8
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 2.5e-123 446.0 305 73.1
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 3.3e-123 445.7 307 73.6
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 3.3e-123 445.7 333 67.6
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 4.3e-123 445.3 321 70.1
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 7.3e-123 444.5 329 69.3
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.6e-122 443.4 313 71.6
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 2.1e-122 443.0 280 79.3
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.1e-122 443.0 305 71.5
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 2.8e-122 442.6 338 67.2
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 4.7e-122 441.8 334 67.4
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 6.2e-122 441.4 339 66.7
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 8.1e-122 441.0 330 68.2
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 1.8e-121 439.9 328 67.7
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 1.8e-121 439.9 331 68.9
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 2.4e-121 439.5 333 66.7
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 3.1e-121 439.1 314 68.5
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 5.2e-121 438.3 330 67.9
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 5.2e-121 438.3 303 72.6
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 6.8e-121 438.0 314 69.1
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 6.8e-121 438.0 323 69.3
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 4.4e-120 435.3 334 66.5
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 4.4e-120 435.3 314 67.5
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 5.8e-120 434.9 334 66.5
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 1.7e-119 433.3 304 72.7
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 1.7e-119 433.3 360 64.2
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 4.9e-119 431.8 320 68.1
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 4.9e-119 431.8 376 61.4
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 4.9e-119 431.8 322 66.8
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 6.4e-119 431.4 334 65.6
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 1.6e-117 426.8 333 65.2
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 3.5e-117 425.6 323 66.6
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.1e-114 416.4 305 69.8
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 4.8e-114 415.2 329 64.4
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 6.2e-114 414.8 319 67.1
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 7.1e-110 401.4 247 78.9
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 9.3e-110 401.0 300 65.3
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 1.6e-106 390.2 250 78.0
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 1.6e-106 390.2 522 46.7
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 3.6e-106 389.0 276 73.2
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 4.8e-106 388.7 305 65.6
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.9e-102 376.7 315 63.2
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 1.8e-100 370.2 277 69.0
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 1.1e-99 367.5 248 74.6
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 4.6e-93 345.5 314 54.1
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.0e-92 342.8 198 84.8
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 2.8e-90 336.3 208 77.9
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 6.3e-90 335.1 213 77.9
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 1.6e-85 320.5 311 53.1
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 1.8e-84 317.0 229 72.9
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 3.1e-81 306.2 214 72.9
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 6.9e-81 305.1 260 64.2
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 1.2e-80 304.3 260 64.2
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 4.6e-77 292.4 278 53.2
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 4.4e-75 285.8 185 77.3
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 3.9e-68 262.7 163 79.8
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.1e-65 254.6 161 78.3
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 5.3e-65 252.3 186 68.8
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 1.5e-62 244.2 359 40.4
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 1.7e-58 230.7 170 67.1
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 2.5e-54 216.9 155 72.9
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.0e-51 207.2 147 72.8
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 7.0e-49 198.7 259 45.2
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 7.0e-49 198.7 144 69.4
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 2.5e-46 190.3 313 40.6
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 4.0e-44 183.0 119 75.6
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 1.2e-37 161.4 156 54.5
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 2.7e-32 143.7 309 33.0
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 3.1e-28 130.2 94 68.1
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.9e-26 123.6 135 50.4
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 3.7e-26 123.2 333 33.6
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 1.9e-25 120.9 71 83.1
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 9.2e-25 118.6 239 32.2
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 1.9e-22 110.9 88 62.5
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 5.2e-20 102.8 206 34.0
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 8.3e-18 95.5 57 78.9
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 2.5e-14 84.0 56 73.2
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 9.2e-09 65.5 45 66.7
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 2.1e-08 64.3 58 55.2
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 2.1e-08 64.3 46 63.0
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 1.1e-06 58.5 76 43.4


User provided reference genes

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