Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 1.7e-301 1038.5 516 100.0
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 1.6e-278 962.2 518 91.3
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 1.3e-277 959.1 517 89.9
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 5.1e-277 957.2 516 90.5
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 1.9e-276 955.3 518 90.2
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 2.5e-276 954.9 501 92.4
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 3.6e-275 951.0 518 89.6
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 8.1e-275 949.9 519 89.4
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 1.1e-274 949.5 517 89.9
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 5.3e-274 947.2 524 88.2
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 1.2e-273 946.0 503 91.3
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 2.0e-273 945.3 506 91.1
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.3e-272 942.6 519 87.9
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 3.8e-272 941.0 498 91.8
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 4.9e-272 940.6 525 87.4
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 4.9e-272 940.6 523 87.8
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 6.4e-272 940.3 505 89.9
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 6.4e-272 940.3 498 91.4
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 1.1e-271 939.5 512 88.9
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 1.4e-271 939.1 498 91.6
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 4.2e-271 937.6 515 88.7
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 7.1e-271 936.8 511 89.2
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 7.1e-271 936.8 511 89.2
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 7.1e-271 936.8 520 88.1
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 7.1e-271 936.8 553 83.7
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 7.1e-271 936.8 512 88.5
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 1.2e-270 936.0 520 88.1
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 1.6e-270 935.6 521 87.9
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 2.7e-270 934.9 513 88.7
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 2.7e-270 934.9 520 87.7
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 7.9e-270 933.3 520 87.7
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 7.9e-270 933.3 516 88.4
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 1.0e-269 932.9 517 86.7
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 1.8e-269 932.2 525 86.5
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.3e-269 931.8 520 87.5
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 5.1e-269 930.6 500 90.0
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 5.1e-269 930.6 507 88.6
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 5.1e-269 930.6 517 86.3
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 5.1e-269 930.6 517 86.3
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 6.7e-269 930.2 498 90.2
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 8.7e-269 929.9 520 87.3
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.1e-268 929.5 520 87.3
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 1.5e-268 929.1 516 88.2
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 1.5e-268 929.1 513 87.9
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 1.9e-268 928.7 511 88.1
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 5.6e-268 927.2 524 86.3
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 9.6e-268 926.4 498 90.0
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 9.6e-268 926.4 520 87.1
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 9.6e-268 926.4 525 85.9
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 2.8e-267 924.9 545 84.6
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 6.2e-267 923.7 514 88.3
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 6.2e-267 923.7 523 86.6
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.1e-266 922.9 521 85.8
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 1.1e-266 922.9 519 85.7
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 1.1e-266 922.9 514 87.5
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 1.8e-266 922.2 512 87.9
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 2.4e-266 921.8 518 85.9
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 5.3e-266 920.6 516 87.2
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 6.9e-266 920.2 523 86.4
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 6.9e-266 920.2 523 86.4
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 6.9e-266 920.2 519 85.7
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 9.0e-266 919.8 518 88.0
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 9.0e-266 919.8 526 85.7
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 9.0e-266 919.8 527 85.0
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.2e-265 919.5 499 89.0
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 2.0e-265 918.7 507 87.8
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 3.4e-265 917.9 516 87.6
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 7.6e-265 916.8 523 86.2
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 9.9e-265 916.4 523 86.2
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 9.9e-265 916.4 523 86.2
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 1.3e-264 916.0 497 88.5
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 2.2e-264 915.2 523 84.3
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 2.9e-264 914.8 520 85.8
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 3.8e-264 914.4 499 89.0
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 6.4e-264 913.7 499 88.8
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.1e-263 912.9 498 88.4
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 1.9e-263 912.1 499 88.6
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 2.4e-263 911.8 521 85.4
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 2.4e-263 911.8 503 88.1
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 3.2e-263 911.4 521 84.6
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 3.2e-263 911.4 498 88.0
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 7.1e-263 910.2 524 83.8
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 9.3e-263 909.8 519 85.9
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 3.5e-262 907.9 545 82.0
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 6.0e-262 907.1 490 89.4
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 6.0e-262 907.1 521 84.6
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 6.0e-262 907.1 492 89.8
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 6.0e-262 907.1 528 84.1
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.3e-261 906.0 492 88.8
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 1.8e-261 905.6 499 87.8
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 2.3e-261 905.2 499 88.0
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 6.7e-261 903.7 499 87.0
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 8.7e-261 903.3 510 86.5
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 3.3e-260 901.4 503 86.1
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 7.4e-260 900.2 521 83.9
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 6.2e-259 897.1 527 83.3
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 1.3e-256 889.4 518 84.7
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 8.4e-256 886.7 499 85.4
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.1e-255 886.3 514 81.5
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.9e-255 885.6 521 82.3
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 5.5e-255 884.0 511 82.2
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 9.3e-255 883.2 515 83.7
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 9.3e-255 883.2 515 83.7
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 6.9e-250 867.1 508 80.7
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 2.7e-246 855.1 518 81.5
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 6.7e-245 850.5 527 77.4
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 4.1e-242 841.3 516 79.1
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 5.5e-239 830.9 564 74.1
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.0e-237 826.6 527 75.9
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 1.3e-232 809.7 498 77.3
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 7.2e-231 803.9 499 77.4
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 9.7e-228 793.5 472 84.7
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 2.2e-227 792.3 500 75.2
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 1.8e-226 789.3 507 73.4
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.6e-222 776.2 499 72.5
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 1.4e-221 773.1 508 71.7
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 6.7e-221 770.8 508 71.1
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 3.8e-216 755.0 523 75.1
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 5.0e-216 754.6 494 70.6
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 6.1e-214 747.7 524 74.0
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 2.6e-212 742.3 507 70.6
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 9.8e-212 740.3 416 86.3
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 6.1e-206 721.1 396 89.4
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 5.7e-204 714.5 521 71.8
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 1.4e-202 709.9 491 67.8
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 1.7e-195 686.4 378 90.2
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 3.2e-186 655.6 523 60.8
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 5.4e-186 654.8 504 63.9
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 7.1e-178 627.9 418 77.0
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 2.7e-177 625.9 345 89.3
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 1.0e-176 624.0 344 89.8
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 1.3e-158 563.9 500 59.2
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 1.3e-155 553.9 354 78.2
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 5.6e-151 538.5 290 88.3
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 2.1e-150 536.6 287 88.5
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 2.1e-150 536.6 491 53.0
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 1.5e-140 503.8 275 91.3
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 1.6e-137 493.8 510 51.2
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 3.9e-136 489.2 356 71.3
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 5.7e-127 458.8 502 48.8
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 3.2e-122 443.0 285 79.3
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 5.3e-101 372.5 190 92.1
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 8.9e-80 302.0 409 40.1
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 3.4e-63 246.9 325 46.2
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 5.8e-63 246.1 362 43.6
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 9.9e-47 192.2 120 75.8
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 3.4e-39 167.2 93 86.0
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 2.2e-30 137.9 78 82.1
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 1.1e-29 135.6 93 71.0
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 1.7e-22 111.7 67 77.6
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 5.5e-21 106.7 76 69.7
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 5.9e-15 86.7 72 62.5
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 5.0e-14 83.6 125 44.8
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 6.7e-11 73.2 48 64.6
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 9.1e-08 62.8 35 77.1


User provided reference genes

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