Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007705 Daucus carota HOM05D006435 ORTHO05D008262 4.7e-123 444.5 221 100.0
CSS0040195 Camellia sinensis var. sinensis HOM05D006435 ORTHO05D008262 6.4e-104 380.9 211 87.7
QL12p026394 Quercus lobata HOM05D006435 ORTHO05D008262 4.2e-103 378.3 219 82.6
arahy.Tifrunner.gnm1.ann1.463B8J Arachis hypogaea HOM05D006435 ORTHO05D008262 6.0e-102 374.4 213 84.5
arahy.Tifrunner.gnm1.ann1.W16L9Q Arachis hypogaea HOM05D006435 ORTHO05D008262 1.0e-101 373.6 213 84.0
CiPaw.07G207200 Carya illinoinensis HOM05D006435 ORTHO05D008262 1.5e-100 369.8 212 84.0
Hma1.2p1_0140F.1_g063520 Hydrangea macrophylla HOM05D006435 ORTHO05D008262 1.9e-100 369.4 210 86.7
TWI32G0701 Tripterygium wilfordii HOM05D006435 ORTHO05D008262 4.3e-100 368.2 212 84.4
vmacro11085 Vaccinium macrocarpon HOM05D006435 ORTHO05D008262 1.4e-98 363.2 212 83.0
Lalb_Chr22g0360991 Lupinus albus HOM05D006435 ORTHO05D008262 2.4e-98 362.5 213 83.1
Rhsim02G0182200 Rhododendron simsii HOM05D006435 ORTHO05D008262 3.1e-98 362.1 212 83.0
Nn2g11721 Nelumbo nucifera HOM05D006435 ORTHO05D008262 9.0e-98 360.5 220 80.5
Glyma.17G190400 Glycine max HOM05D006435 ORTHO05D008262 1.5e-97 359.8 212 82.5
Sopen08g022120 Solanum pennellii HOM05D006435 ORTHO05D008262 1.5e-97 359.8 215 80.9
Actinidia31221 Actinidia chinensis HOM05D006435 ORTHO05D008262 3.4e-97 358.6 217 81.1
Potri.018G037300 Populus trichocarpa HOM05D006435 ORTHO05D008262 4.5e-97 358.2 217 79.7
Cc00_g17690 Coffea canephora HOM05D006435 ORTHO05D008262 5.8e-97 357.8 215 80.5
GSVIVG01035670001 Vitis vinifera HOM05D006435 ORTHO05D008262 5.8e-97 357.8 219 78.5
MELO3C003582.2 Cucumis melo HOM05D006435 ORTHO05D008262 1.0e-96 357.1 219 79.9
Lj8C603T5 Lonicera japonica HOM05D006435 ORTHO05D008262 2.9e-96 355.5 217 83.4
Solyc08g068270.3 Solanum lycopersicum HOM05D006435 ORTHO05D008262 2.9e-96 355.5 215 80.9
THA.LOC104815054 Tarenaya hassleriana HOM05D006435 ORTHO05D008262 3.8e-96 355.1 216 78.2
Manes.03G062800 Manihot esculenta HOM05D006435 ORTHO05D008262 6.5e-96 354.4 216 79.2
PGSC0003DMG400014515 Solanum tuberosum HOM05D006435 ORTHO05D008262 6.5e-96 354.4 215 79.5
Eucgr.C01580 Eucalyptus grandis HOM05D006435 ORTHO05D008262 1.1e-95 353.6 216 80.1
Cfa013344 Carpinus fangiana HOM05D006435 ORTHO05D008262 3.2e-95 352.1 219 79.0
Thecc.09G039800 Theobroma cacao HOM05D006435 ORTHO05D008262 5.5e-95 351.3 219 77.2
Cpa.g.sc78.80 Carica papaya HOM05D006435 ORTHO05D008262 7.1e-95 350.9 212 79.2
Ciclev10009372m.g Citrus clementina HOM05D006435 ORTHO05D008262 9.3e-95 350.5 211 80.1
Medtr1g008300 Medicago truncatula HOM05D006435 ORTHO05D008262 1.2e-94 350.1 213 80.3
Lj1g0009240 Lotus japonicus HOM05D006435 ORTHO05D008262 1.6e-94 349.7 212 78.8
Oeu063249.1 Olea europaea HOM05D006435 ORTHO05D008262 1.6e-94 349.7 212 78.3
CsaV3_3G047410 Cucumis sativus L. HOM05D006435 ORTHO05D008262 2.1e-94 349.4 216 80.1
Thhalv10004692m.g Eutrema salsugineum HOM05D006435 ORTHO05D008262 2.7e-94 349.0 213 77.5
Gohir.D05G050300 Gossypium hirsutum HOM05D006435 ORTHO05D008262 2.7e-94 349.0 212 79.7
VMungo0647G0379 Vigna mungo HOM05D006435 ORTHO05D008262 2.7e-94 349.0 212 80.2
CANSAT80G2129 Cannabis sativa HOM05D006435 ORTHO05D008262 3.5e-94 348.6 210 78.6
Nitab4.5_0003338g0080 Nicotiana tabacum HOM05D006435 ORTHO05D008262 3.5e-94 348.6 208 79.3
Duzib187G0700 Durio zibethinus HOM05D006435 ORTHO05D008262 4.6e-94 348.2 219 76.7
TPR.G12017 Trifolium pratense HOM05D006435 ORTHO05D008262 4.6e-94 348.2 213 80.3
Dinv30253 Davidia involucrata HOM05D006435 ORTHO05D004219 6.0e-94 347.8 199 86.4
Gohir.A05G048400 Gossypium hirsutum HOM05D006435 ORTHO05D008262 6.0e-94 347.8 212 79.2
SGA_v2.0_scaffold280G46829 Striga asiatica HOM05D006435 ORTHO05D008262 1.8e-93 346.3 212 78.3
Prupe.1G452600 Prunus persica HOM05D006435 ORTHO05D008262 5.1e-93 344.7 205 78.5
Gorai.009G051800 Gossypium raimondii HOM05D006435 ORTHO05D008262 6.7e-93 344.4 212 79.2
Sed0025420 Sechium edule HOM05D006435 ORTHO05D008262 6.7e-93 344.4 209 81.3
Aa31LG11G4730 Aethionema arabicum HOM05D006435 ORTHO05D008262 8.7e-93 344.0 211 77.3
Sp2g21890 Schrenkiella parvula HOM05D006435 ORTHO05D008262 1.1e-92 343.6 207 78.3
HanXRQChr02g0048091 Helianthus annuus HOM05D006435 ORTHO05D008262 1.5e-92 343.2 212 79.7
Lsat_1_v5_gn_6_10980 Lactuca sativa HOM05D006435 ORTHO05D008262 1.5e-92 343.2 216 79.6
AL6G37530 Arabidopsis lyrata HOM05D006435 ORTHO05D008262 3.3e-92 342.0 213 76.5
CDE05G2477 Ceratophyllum demersum HOM05D006435 ORTHO05D008262 3.3e-92 342.0 220 74.1
SalBow4G2069 Salvia bowleyana HOM05D006435 ORTHO05D008262 3.3e-92 342.0 205 81.0
Aqoxy7G01634 Aquilegia oxysepala HOM05D006435 ORTHO05D008262 4.3e-92 341.7 212 79.7
PSO782G5114 Papaver somniferum HOM05D006435 ORTHO05D008262 9.6e-92 340.5 211 79.6
BcaC03g17897 Brassica carinata HOM05D006435 ORTHO05D008262 1.6e-91 339.7 209 78.0
C02p59390 Brassica napus HOM05D006435 ORTHO05D008262 1.6e-91 339.7 209 78.0
BraA02t08928Z Brassica rapa HOM05D006435 ORTHO05D008262 1.6e-91 339.7 209 78.0
Carub.0006s2947 Capsella rubella HOM05D006435 ORTHO05D008262 1.6e-91 339.7 213 75.1
AUR62023016 Chenopodium quinoa HOM05D006435 ORTHO05D008262 1.6e-91 339.7 211 79.1
AUR62009330 Chenopodium quinoa HOM05D006435 ORTHO05D008262 2.1e-91 339.3 211 79.1
Ah.16g105260 Amaranthus hybridus HOM05D006435 ORTHO05D008262 3.7e-91 338.6 211 79.1
MD15G1097700 Malus domestica HOM05D006435 ORTHO05D008262 4.8e-91 338.2 205 77.6
PSO832G3386 Papaver somniferum HOM05D006435 ORTHO05D008262 4.8e-91 338.2 211 79.1
EL10Ac2g04073 Beta vulgaris HOM05D006435 ORTHO05D008262 1.1e-90 337.0 211 77.7
CAN.G797.1 Capsicum annuum HOM05D006435 ORTHO05D008262 1.1e-90 337.0 216 76.4
MSTRG.11716 Avicennia marina HOM05D006435 ORTHO05D008262 1.4e-90 336.7 206 79.1
CARHR187680 Cardamine hirsuta HOM05D006435 ORTHO05D008262 1.4e-90 336.7 213 75.6
MBI01_g28042_MAGBIO Magnolia biondii HOM05D006435 ORTHO05D008262 1.4e-90 336.7 220 75.5
BcaB07g29986 Brassica carinata HOM05D006435 ORTHO05D008262 3.1e-90 335.5 209 76.6
Atru.chr7.2160 Acer truncatum HOM05D006435 ORTHO05D008262 4.1e-90 335.1 208 77.9
Phvul.001G078600 Phaseolus vulgaris HOM05D006435 ORTHO05D008262 5.3e-90 334.7 208 81.7
ATR0315G035 Amborella trichopoda HOM05D006435 ORTHO05D008262 1.2e-89 333.6 210 78.1
Hund19545 Selenicereus undatus HOM05D006435 ORTHO05D008262 3.4e-89 332.0 208 76.4
ECA233G4084 Erigeron canadensis HOM05D006435 ORTHO05D008262 7.6e-89 330.9 199 82.9
HPP92_001799 Vanilla planifolia HOM05D006435 ORTHO05D008262 1.3e-88 330.1 209 77.0
FvH4_2g36120 Fragaria vesca HOM05D006435 ORTHO05D008262 3.8e-88 328.6 206 75.7
FAN27G2865 Fragaria x ananassa HOM05D006435 ORTHO05D008262 5.0e-88 328.2 206 75.7
RcHm_v2.0_Chr6g0305751 Rosa chinensis HOM05D006435 ORTHO05D008262 6.5e-88 327.8 205 76.6
Migut.A00245 Erythranthe guttata HOM05D006435 ORTHO05D008262 1.9e-87 326.2 212 74.1
VMungo1215G1854 Vigna mungo HOM05D006435 ORTHO05D008262 2.5e-87 325.9 210 77.1
SEGI_13627 Sequoiadendron giganteum HOM05D006435 ORTHO05D008262 1.9e-84 316.2 226 69.9
unitig_0.g2807 Utricularia gibba HOM05D006435 ORTHO05D008262 3.3e-84 315.5 230 67.4
Sc09g0009090 Simmondsia chinensis HOM05D006435 ORTHO05D008262 4.1e-82 308.5 210 71.0
FAN20G0337 Fragaria x ananassa HOM05D006435 ORTHO05D008262 2.9e-80 302.4 201 73.6
Os05g0220600 Oryza sativa ssp. japonica HOM05D006435 ORTHO05D008262 3.8e-80 302.0 219 68.5
Zm00001eb350490 Zea mays HOM05D006435 ORTHO05D008262 1.1e-79 300.4 215 67.4
COL.COLO4_18696 Corchorus olitorius HOM05D006435 ORTHO05D008262 5.5e-79 298.1 212 70.3
Haze_21849 Corylus avellana HOM05D006435 ORTHO05D008262 3.6e-78 295.4 180 80.0
PGR031G0325 Punica granatum HOM05D006435 ORTHO05D008262 6.7e-77 291.2 162 84.6
TAR624G0864 Trochodendron aralioides HOM05D006435 ORTHO05D008262 4.3e-76 288.5 163 86.5
Pp3c15_3110 Physcomitrium patens HOM05D006435 ORTHO05D008262 1.8e-74 283.1 218 67.9
AagrBONN_evm.TU.Sc2ySwM_117.700 Anthoceros agrestis HOM05D006435 ORTHO05D008262 5.3e-74 281.6 196 73.0
Eucgr.L02138 Eucalyptus grandis HOM05D006435 ORTHO05D008262 6.9e-74 281.2 216 69.0
Mapoly0109s0030 Marchantia polymorpha HOM05D006435 ORTHO05D008262 1.5e-73 280.0 210 66.7
Psat6g034280 Pisum sativum HOM05D006435 ORTHO05D008262 8.5e-72 274.2 158 84.2
AL6G37520 Arabidopsis lyrata HOM05D006435 ORTHO05D008262 6.1e-70 268.1 217 63.1
SMO116G0425 Selaginella moellendorffii HOM05D006435 ORTHO05D008262 8.8e-69 264.2 209 60.3
Solyc10g012245.1 Solanum lycopersicum HOM05D006435 ORTHO05D008262 3.3e-68 262.3 160 80.0
AT5G25640 Arabidopsis thaliana HOM05D006435 ORTHO05D008262 1.1e-66 257.3 215 60.5
Nitab4.5_0000052g0140 Nicotiana tabacum HOM05D006435 ORTHO05D008262 1.9e-63 246.5 228 58.3
Carub.0006s2351 Capsella rubella HOM05D006435 ORTHO05D008262 5.5e-63 245.0 208 58.2
ClCG11G014010 Citrullus lanatus HOM05D006435 ORTHO05D008262 7.0e-58 228.0 136 82.4
Ciclev10010273m.g Citrus clementina HOM05D006435 ORTHO05D008262 1.3e-56 223.8 158 71.5
Peaxi162Scf00523g00529 Petunia axillaris HOM05D006435 ORTHO05D008262 4.0e-53 212.2 140 77.9
Ca_12811_v3 Cicer arietinum L. HOM05D006435 ORTHO05D008262 5.2e-53 211.8 139 77.7
MBI01_g28043_MAGBIO Magnolia biondii HOM05D006435 ORTHO05D008262 3.1e-50 202.6 220 55.0
Glyma.14G141900 Glycine max HOM05D006435 ORTHO05D008262 1.0e-45 187.6 102 92.2
PSO782G5630 Papaver somniferum HOM05D006435 ORTHO05D008262 7.5e-44 181.4 191 49.7
Sabra18G0038100 Salix brachista HOM05D006435 ORTHO05D008262 5.4e-42 175.3 116 75.9
Cre16.g664801 Chlamydomonas reinhardtii HOM05D006435 ORTHO05D008262 9.5e-39 164.5 192 45.3
PRCOL_00005434 Prasinoderma coloniale HOM05D006435 ORTHO05D008262 9.5e-39 164.5 184 44.6
PSO782G2728 Papaver somniferum HOM05D006435 ORTHO05D008262 7.5e-36 154.8 188 42.6
Peaxi162Scf00523g00528 Petunia axillaris HOM05D006435 ORTHO05D008262 8.6e-32 141.4 82 75.6
A02p39610 Brassica napus HOM05D006435 ORTHO05D008262 1.8e-29 133.7 82 70.7
FAN15G2703 Fragaria x ananassa HOM05D006435 ORTHO05D008262 2.2e-27 126.7 74 70.3
Solyc10g012295.1 Solanum lycopersicum HOM05D006435 ORTHO05D008262 2.9e-27 126.3 91 74.7
PSO832G3154 Papaver somniferum HOM05D006435 ORTHO05D008262 3.5e-25 119.4 197 35.5
MD08G1118500 Malus domestica HOM05D006435 ORTHO05D008262 1.9e-23 113.6 75 72.0
MBI01_g46977_MAGBIO Magnolia biondii HOM05D006435 ORTHO05D008262 7.8e-17 91.7 76 67.1
Cre12.g546200 Chlamydomonas reinhardtii HOM05D006435 ORTHO05D146483 1.6e-09 67.4 181 29.3
Cre11.g467648 Chlamydomonas reinhardtii HOM05D006435 ORTHO05D143948 1.7e-08 63.9 90 33.3
Ca_10788_v3 Cicer arietinum L. HOM05D000659 ORTHO05D000505 2.3e-08 63.5 164 29.9
Lalb_Chr22g0350911 Lupinus albus HOM05D000659 ORTHO05D000505 2.3e-08 63.5 103 41.7
Lalb_Chr14g0373771 Lupinus albus HOM05D000659 ORTHO05D000505 3.9e-08 62.8 103 42.7
Haze_21850 Corylus avellana HOM05D006435 ORTHO05D008262 5.1e-08 62.4 42 73.8
Os04g0569300 Oryza sativa ssp. japonica HOM05D000659 ORTHO05D000505 3.3e-07 59.7 87 35.6
Ca_12801_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 5.6e-07 58.9 43 65.1
Glyma.14G142000 Glycine max HOM05D006435 ORTHO05D008262 7.3e-07 58.5 42 64.3
Zm00001eb164560 Zea mays HOM05D000659 ORTHO05D000505 7.3e-07 58.5 171 26.3
Lalb_Chr19g0130981 Lupinus albus HOM05D000659 ORTHO05D000505 9.6e-07 58.2 154 27.3
Hund04948 Selenicereus undatus HOM05D000659 ORTHO05D000505 9.6e-07 58.2 108 34.3
arahy.Tifrunner.gnm1.ann1.VFZ35Y Arachis hypogaea HOM05D000659 ORTHO05D000505 1.2e-06 57.8 176 31.2
FAN06G1231 Fragaria x ananassa HOM05D000659 ORTHO05D000505 1.2e-06 57.8 158 28.5
Lalb_Chr03g0034381 Lupinus albus HOM05D000659 ORTHO05D000505 1.2e-06 57.8 154 27.9
FvH4_7g29110 Fragaria vesca HOM05D000659 ORTHO05D000505 1.6e-06 57.4 103 33.0
PGR004G1090 Punica granatum HOM05D000659 ORTHO05D000505 1.6e-06 57.4 169 29.6
vmacro20163 Vaccinium macrocarpon HOM05D000659 ORTHO05D000505 2.1e-06 57.0 177 28.8
VMungo1080G0290 Vigna mungo HOM05D000659 ORTHO05D000505 2.1e-06 57.0 90 40.0
AagrBONN_evm.TU.Sc2ySwM_228.959 Anthoceros agrestis HOM05D000659 ORTHO05D000505 2.8e-06 56.6 107 33.6
arahy.Tifrunner.gnm1.ann1.SNC62Y Arachis hypogaea HOM05D000659 ORTHO05D000505 2.8e-06 56.6 176 30.7
Potri.006G086300 Populus trichocarpa HOM05D000659 ORTHO05D000505 2.8e-06 56.6 143 29.4
SEGI_21055 Sequoiadendron giganteum HOM05D000659 ORTHO05D000505 2.8e-06 56.6 149 29.5
AUR62009562 Chenopodium quinoa HOM05D000659 ORTHO05D000505 3.6e-06 56.2 150 28.0
Cre03.g144084 Chlamydomonas reinhardtii HOM05D000659 ORTHO05D000505 3.6e-06 56.2 150 31.3
Cc06_g02550 Coffea canephora HOM05D000659 ORTHO05D000505 3.6e-06 56.2 184 28.3
ECA232G2175 Erigeron canadensis HOM05D000659 ORTHO05D000505 3.6e-06 56.2 95 35.8
Solyc03g026080.3 Solanum lycopersicum HOM05D000659 ORTHO05D000505 3.6e-06 56.2 169 28.4
Sopen03g004920 Solanum pennellii HOM05D000659 ORTHO05D000505 3.6e-06 56.2 169 28.4
AUR62001774 Chenopodium quinoa HOM05D000659 ORTHO05D000505 4.7e-06 55.8 150 28.0
COL.COLO4_14787 Corchorus olitorius HOM05D000659 ORTHO05D000505 4.7e-06 55.8 176 27.8
ECA236G3352 Erigeron canadensis HOM05D000659 ORTHO05D000505 4.7e-06 55.8 87 37.9
FAN06G2618 Fragaria x ananassa HOM05D000659 ORTHO05D000505 4.7e-06 55.8 148 28.4
Glyma.15G009000 Glycine max HOM05D000659 ORTHO05D000505 4.7e-06 55.8 90 38.9
Lsat_1_v5_gn_8_85400 Lactuca sativa HOM05D000659 ORTHO05D000505 4.7e-06 55.8 87 37.9
Medtr2g103600 Medicago truncatula HOM05D000659 ORTHO05D000505 4.7e-06 55.8 136 33.8
PGR042G1240 Punica granatum HOM05D000659 ORTHO05D000505 4.7e-06 55.8 185 27.0
vmacro08649 Vaccinium macrocarpon HOM05D000659 ORTHO05D000505 4.7e-06 55.8 143 29.4
vmacro09850 Vaccinium macrocarpon HOM05D000659 ORTHO05D000505 4.7e-06 55.8 150 28.0
BcaB01g06352 Brassica carinata HOM05D000659 ORTHO05D000505 6.2e-06 55.5 154 28.6
Duzib068G1094 Durio zibethinus HOM05D000659 ORTHO05D000505 6.2e-06 55.5 87 34.5
Lsat_1_v5_gn_9_54280 Lactuca sativa HOM05D000659 ORTHO05D000505 6.2e-06 55.5 87 37.9
Medtr1g101310 Medicago truncatula HOM05D000659 ORTHO05D000505 6.2e-06 55.5 169 26.6
Os11g0704800 Oryza sativa ssp. japonica HOM05D000659 ORTHO05D000505 6.2e-06 55.5 197 26.9
Peaxi162Scf01327g00137 Petunia axillaris HOM05D007017 ORTHO05D008784 6.2e-06 55.5 146 28.8
Sed0002997 Sechium edule HOM05D000659 ORTHO05D000505 6.2e-06 55.5 87 37.9
BraA10t44950Z Brassica rapa HOM05D000659 ORTHO05D000505 8.1e-06 55.1 154 30.5
ClCG10G021190 Citrullus lanatus HOM05D000659 ORTHO05D000505 8.1e-06 55.1 87 36.8
HanXRQChr04g0125491 Helianthus annuus HOM05D000659 ORTHO05D000505 8.1e-06 55.1 87 36.8
Os08g0546700 Oryza sativa ssp. japonica HOM05D000659 ORTHO05D000505 8.1e-06 55.1 93 34.4
Psat5g301800 Pisum sativum HOM05D000659 ORTHO05D000505 8.1e-06 55.1 91 38.5
unitig_26.g9193 Utricularia gibba HOM05D000659 ORTHO05D000505 8.1e-06 55.1 120 30.0
HPP92_026923 Vanilla planifolia HOM05D000659 ORTHO05D000505 8.1e-06 55.1 146 29.5


User provided reference genes

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