Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006797 Daucus carota HOM05D000274 ORTHO05D006767 5.0e-58 228.0 159 100.0
DCAR_008450 Daucus carota HOM05D000274 ORTHO05D006767 1.1e-39 167.2 186 54.3
RcHm_v2.0_Chr7g0201061 Rosa chinensis HOM05D000274 ORTHO05D006767 9.2e-36 154.1 186 51.1
Thecc.03G263300 Theobroma cacao HOM05D000274 ORTHO05D006767 2.1e-35 152.9 186 50.5
FvH4_5g00850 Fragaria vesca HOM05D000274 ORTHO05D006767 2.7e-35 152.5 186 50.5
FAN08G2422 Fragaria x ananassa HOM05D000274 ORTHO05D006767 2.7e-35 152.5 186 50.5
FAN18G2275 Fragaria x ananassa HOM05D000274 ORTHO05D006767 2.7e-35 152.5 186 50.5
TAR375G0199 Trochodendron aralioides HOM05D000274 ORTHO05D006767 2.7e-35 152.5 186 50.0
CSS0003342 Camellia sinensis var. sinensis HOM05D000274 ORTHO05D006767 4.6e-35 151.8 186 49.5
ECA246G0641 Erigeron canadensis HOM05D000274 ORTHO05D006767 4.6e-35 151.8 186 48.9
HanXRQChr06g0164721 Helianthus annuus HOM05D000274 ORTHO05D006767 4.6e-35 151.8 186 48.9
TAR626G1468 Trochodendron aralioides HOM05D000274 ORTHO05D006767 4.6e-35 151.8 186 50.0
Gohir.A12G222000 Gossypium hirsutum HOM05D000274 ORTHO05D006767 7.8e-35 151.0 186 49.5
Gohir.D12G224500 Gossypium hirsutum HOM05D000274 ORTHO05D006767 7.8e-35 151.0 186 49.5
Gorai.008G240600 Gossypium raimondii HOM05D000274 ORTHO05D006767 7.8e-35 151.0 186 49.5
HanXRQChr17g0550501 Helianthus annuus HOM05D000274 ORTHO05D006767 7.8e-35 151.0 186 48.4
Lsat_1_v5_gn_3_3401 Lactuca sativa HOM05D000274 ORTHO05D006767 7.8e-35 151.0 185 48.6
SalBow6G2249 Salvia bowleyana HOM05D000274 ORTHO05D006767 1.0e-34 150.6 186 49.5
MD04G1077600 Malus domestica HOM05D000274 ORTHO05D006767 1.3e-34 150.2 186 50.0
Lalb_Chr05g0225301 Lupinus albus HOM05D000274 ORTHO05D006767 1.7e-34 149.8 186 50.0
MD06G1063900 Malus domestica HOM05D000274 ORTHO05D006767 3.0e-34 149.1 186 49.5
PGR004G1395 Punica granatum HOM05D000274 ORTHO05D006767 3.0e-34 149.1 186 48.9
QL12p015358 Quercus lobata HOM05D000274 ORTHO05D006767 3.0e-34 149.1 185 50.3
CSS0013233 Camellia sinensis var. sinensis HOM05D000274 ORTHO05D006767 5.1e-34 148.3 186 49.5
CDE08G0290 Ceratophyllum demersum HOM05D000274 ORTHO05D006767 5.1e-34 148.3 186 48.9
Sed0011540 Sechium edule HOM05D000274 ORTHO05D006767 5.1e-34 148.3 186 48.4
CANSAT21G0895 Cannabis sativa HOM05D000274 ORTHO05D006767 6.6e-34 147.9 185 49.7
Cfa012030 Carpinus fangiana HOM05D000274 ORTHO05D006767 6.6e-34 147.9 186 48.9
Oeu025551.1 Olea europaea HOM05D000274 ORTHO05D006767 8.6e-34 147.5 186 48.9
Eucgr.E00484 Eucalyptus grandis HOM05D000274 ORTHO05D006767 1.5e-33 146.7 186 48.4
PSO063G2753 Papaver somniferum HOM05D000274 ORTHO05D006767 1.5e-33 146.7 186 47.3
PSO782G2278 Papaver somniferum HOM05D000274 ORTHO05D006767 1.5e-33 146.7 186 47.3
Peaxi162Scf00271g00031 Petunia axillaris HOM05D000274 ORTHO05D006767 1.5e-33 146.7 186 48.4
arahy.Tifrunner.gnm1.ann1.U20N0A Arachis hypogaea HOM05D000274 ORTHO05D006767 1.9e-33 146.4 187 47.6
Cpa.g.sc29.73 Carica papaya HOM05D000274 ORTHO05D006767 1.9e-33 146.4 186 48.4
CSS0046106 Camellia sinensis var. sinensis HOM05D000274 ORTHO05D006767 3.3e-33 145.6 186 48.9
Nitab4.5_0000439g0150 Nicotiana tabacum HOM05D000274 ORTHO05D006767 3.3e-33 145.6 186 48.4
Nitab4.5_0005241g0020 Nicotiana tabacum HOM05D000274 ORTHO05D006767 3.3e-33 145.6 186 48.4
Glyma.05G053600 Glycine max HOM05D000274 ORTHO05D006767 4.3e-33 145.2 186 48.9
Glyma.17G136100 Glycine max HOM05D000274 ORTHO05D006767 4.3e-33 145.2 186 48.9
Cc08_g13400 Coffea canephora HOM05D000274 ORTHO05D006767 5.6e-33 144.8 186 49.5
ClCG01G003570 Citrullus lanatus HOM05D000274 ORTHO05D006767 9.5e-33 144.1 186 47.3
CiPaw.12G103600 Carya illinoinensis HOM05D000274 ORTHO05D006767 1.2e-32 143.7 186 48.4
Sc01g0009140 Simmondsia chinensis HOM05D000274 ORTHO05D006767 1.2e-32 143.7 186 48.4
MSTRG.1931 Avicennia marina HOM05D000274 ORTHO05D006767 2.1e-32 142.9 186 47.3
Atru.chr9.1459 Acer truncatum HOM05D000274 ORTHO05D006767 2.8e-32 142.5 186 47.3
EL10Ac5g12635 Beta vulgaris HOM05D000274 ORTHO05D006767 2.8e-32 142.5 183 47.5
BcaC07g41702 Brassica carinata HOM05D000274 ORTHO05D006767 3.6e-32 142.1 186 47.3
A06p09220 Brassica napus HOM05D000274 ORTHO05D006767 3.6e-32 142.1 186 47.3
BraA06t24108Z Brassica rapa HOM05D000274 ORTHO05D006767 3.6e-32 142.1 186 47.3
BraA09t41734Z Brassica rapa HOM05D000274 ORTHO05D006767 3.6e-32 142.1 186 47.3
Carub.0001s1206 Capsella rubella HOM05D000274 ORTHO05D006767 3.6e-32 142.1 186 46.8
BcaC05g25194 Brassica carinata HOM05D000274 ORTHO05D006767 6.2e-32 141.4 186 47.3
Thhalv10008424m.g Eutrema salsugineum HOM05D000274 ORTHO05D006767 6.2e-32 141.4 186 47.3
Aa31LG1G2210 Aethionema arabicum HOM05D000274 ORTHO05D006767 8.1e-32 141.0 186 47.3
AUR62010522 Chenopodium quinoa HOM05D000274 ORTHO05D006767 8.1e-32 141.0 186 45.7
AUR62017375 Chenopodium quinoa HOM05D000274 ORTHO05D006767 8.1e-32 141.0 186 45.7
Ah.12g058120 Amaranthus hybridus HOM05D000274 ORTHO05D006767 1.1e-31 140.6 186 47.3
AL1G23740 Arabidopsis lyrata HOM05D000274 ORTHO05D006767 1.4e-31 140.2 186 46.2
AT1G12410 Arabidopsis thaliana HOM05D000274 ORTHO05D006767 1.4e-31 140.2 186 46.2
arahy.Tifrunner.gnm1.ann1.6QW8CL Arachis hypogaea HOM05D000274 ORTHO05D006767 1.4e-31 140.2 186 46.2
MELO3C005589.2 Cucumis melo HOM05D000274 ORTHO05D006767 1.4e-31 140.2 186 46.2
MBI04_g35280_MAGBIO Magnolia biondii HOM05D000274 ORTHO05D006767 1.8e-31 139.8 187 47.6
unitig_52.g17499 Utricularia gibba HOM05D000274 ORTHO05D006767 1.8e-31 139.8 186 46.8
GSVIVG01019939001 Vitis vinifera HOM05D000274 ORTHO05D006767 1.8e-31 139.8 186 46.2
C05p10790 Brassica napus HOM05D000274 ORTHO05D006767 2.3e-31 139.4 186 46.8
BolC5t29821H Brassica oleracea HOM05D000274 ORTHO05D006767 2.3e-31 139.4 186 46.8
Phvul.003G215800 Phaseolus vulgaris HOM05D000274 ORTHO05D006767 3.1e-31 139.0 186 46.2
Sp1g11010 Schrenkiella parvula HOM05D000274 ORTHO05D006767 3.1e-31 139.0 186 46.2
Lj4g0011320 Lotus japonicus HOM05D000274 ORTHO05D006767 4.0e-31 138.7 186 47.3
CARHR012700 Cardamine hirsuta HOM05D000274 ORTHO05D006767 6.8e-31 137.9 186 45.7
Ciclev10021577m.g Citrus clementina HOM05D000274 ORTHO05D006767 6.8e-31 137.9 186 45.2
C08p47410 Brassica napus HOM05D000274 ORTHO05D006767 2.0e-30 136.3 175 48.0
BolC8t52281H Brassica oleracea HOM05D000274 ORTHO05D006767 2.0e-30 136.3 175 48.0
TWI81G0936 Tripterygium wilfordii HOM05D000274 ORTHO05D006767 2.0e-30 136.3 186 44.6
Manes.01G071900 Manihot esculenta HOM05D000274 ORTHO05D006767 2.6e-30 136.0 186 45.2
Potri.001G115900 Populus trichocarpa HOM05D000274 ORTHO05D006767 2.6e-30 136.0 186 45.2
FAN04G3158 Fragaria x ananassa HOM05D000274 ORTHO05D006767 3.4e-30 135.6 174 49.4
Sabra01G0089000 Salix brachista HOM05D000274 ORTHO05D006767 5.8e-30 134.8 186 44.6
ATR0810G160 Amborella trichopoda HOM05D000274 ORTHO05D006767 2.2e-29 132.9 187 44.9
Gohir.A08G174700 Gossypium hirsutum HOM05D000274 ORTHO05D006767 2.9e-29 132.5 176 46.6
VMungo0251G1701 Vigna mungo HOM05D000274 ORTHO05D006767 2.9e-29 132.5 184 44.0
Prupe.5G081300 Prunus persica HOM05D000274 ORTHO05D006767 3.7e-29 132.1 174 48.3
CAN.G630.55 Capsicum annuum HOM05D000274 ORTHO05D006767 6.4e-29 131.3 186 43.0
THA.LOC104818350 Tarenaya hassleriana HOM05D000274 ORTHO05D006767 6.4e-29 131.3 186 44.6
CsaV3_5G003660 Cucumis sativus L. HOM05D000274 ORTHO05D006767 1.1e-28 130.6 186 43.5
COL.COLO4_23852 Corchorus olitorius HOM05D000274 ORTHO05D006767 1.4e-28 130.2 182 42.9
Ca_12287_v3 Cicer arietinum L. HOM05D000274 ORTHO05D006767 7.1e-28 127.9 186 43.5
Sopen08g027970 Solanum pennellii HOM05D000274 ORTHO05D006767 7.1e-28 127.9 186 44.1
PGSC0003DMG400003952 Solanum tuberosum HOM05D000274 ORTHO05D006767 7.1e-28 127.9 186 44.1
Solyc08g079620.3 Solanum lycopersicum HOM05D000274 ORTHO05D006767 1.6e-27 126.7 186 43.5
arahy.Tifrunner.gnm1.ann1.6KUP6V Arachis hypogaea HOM05D000274 ORTHO05D006767 3.5e-27 125.6 235 37.4
HanXRQChr15g0489441 Helianthus annuus HOM05D000274 ORTHO05D006767 5.1e-26 121.7 127 52.8
Duzib084G0200 Durio zibethinus HOM05D000274 ORTHO05D006767 2.5e-25 119.4 178 41.6
Medtr4g102000 Medicago truncatula HOM05D000274 ORTHO05D006767 2.5e-25 119.4 186 40.9
SMO134G0269 Selaginella moellendorffii HOM05D000274 ORTHO05D006767 5.6e-25 118.2 187 40.1
A09p63870 Brassica napus HOM05D000274 ORTHO05D006767 1.6e-24 116.7 166 44.6
Os06g0136800 Oryza sativa ssp. japonica HOM05D000274 ORTHO05D006767 2.1e-24 116.3 189 38.6
TPR.G37681 Trifolium pratense HOM05D000274 ORTHO05D006767 1.8e-23 113.2 185 38.9
Lj2A206T34 Lonicera japonica HOM05D000274 ORTHO05D006767 3.1e-23 112.5 182 40.1
AagrBONN_evm.TU.Sc2ySwM_117.489 Anthoceros agrestis HOM05D000274 ORTHO05D006767 4.0e-23 112.1 187 39.0
Mapoly0213s0011 Marchantia polymorpha HOM05D000274 ORTHO05D006767 6.8e-23 111.3 187 40.6
CBR_g8944 Chara braunii HOM05D000274 ORTHO05D006767 8.9e-23 110.9 184 38.0
Pp3c12_2930 Physcomitrium patens HOM05D000274 ORTHO05D006767 1.2e-22 110.5 187 39.0
CBR_g23029 Chara braunii HOM05D000274 ORTHO05D006767 1.5e-22 110.2 175 40.6
Dinv37752 Davidia involucrata HOM05D000274 ORTHO05D006767 3.4e-22 109.0 85 68.2
Dinv39067 Davidia involucrata HOM05D000274 ORTHO05D006767 3.4e-22 109.0 85 68.2
Pp3c3_12310 Physcomitrium patens HOM05D000274 ORTHO05D006767 4.4e-22 108.6 187 38.5
FAN13G2566 Fragaria x ananassa HOM05D000274 ORTHO05D006767 5.8e-22 108.2 85 68.2
Duzib068G0042 Durio zibethinus HOM05D000274 ORTHO05D006767 9.9e-22 107.5 172 38.4
Nn1g01221 Nelumbo nucifera HOM05D000274 ORTHO05D006767 2.9e-21 105.9 85 67.1
arahy.Tifrunner.gnm1.ann1.LKJZ2T Arachis hypogaea HOM05D000274 ORTHO05D006767 1.4e-20 103.6 137 46.0
MBI13_g00270_MAGBIO Magnolia biondii HOM05D000274 ORTHO05D006767 2.1e-19 99.8 123 48.8
HPP92_003576 Vanilla planifolia HOM05D000274 ORTHO05D006767 2.7e-19 99.4 188 36.2
Hund14664 Selenicereus undatus HOM05D000274 ORTHO05D006767 7.8e-19 97.8 174 36.2
Zm00001eb377860 Zea mays HOM05D000274 ORTHO05D006767 7.8e-19 97.8 85 57.6
Aqoxy1G01438 Aquilegia oxysepala HOM05D000274 ORTHO05D006767 1.9e-17 93.2 173 34.1
SMO118G0264 Selaginella moellendorffii HOM05D000274 ORTHO05D006767 6.2e-16 88.2 177 32.2
Psat4g216040 Pisum sativum HOM05D000274 ORTHO05D006767 1.1e-15 87.4 85 51.8
SGA_v2.0_scaffold144G35991 Striga asiatica HOM05D000274 ORTHO05D006767 3.1e-15 85.9 186 31.2
vmacro00218 Vaccinium macrocarpon HOM05D000274 ORTHO05D006767 6.9e-15 84.7 175 34.9
BcaC04g22665 Brassica carinata HOM05D000274 ORTHO05D006767 7.6e-14 81.3 169 36.1
Migut.A00848 Erythranthe guttata HOM05D000274 ORTHO05D006767 7.6e-14 81.3 155 36.8
vmacro14037 Vaccinium macrocarpon HOM05D000274 ORTHO05D006767 3.8e-13 79.0 177 29.4
C09p16910 Brassica napus HOM05D000274 ORTHO05D021812 8.4e-13 77.8 158 37.3
HPP92_003573 Vanilla planifolia HOM05D000274 ORTHO05D006767 1.9e-12 76.6 143 35.0
vmacro14036 Vaccinium macrocarpon HOM05D000274 ORTHO05D006767 4.2e-12 75.5 170 32.9
Lalb_Chr16g0389561 Lupinus albus HOM05D000274 ORTHO05D006767 9.3e-12 74.3 40 85.0
BraA07t27925Z Brassica rapa HOM05D000274 ORTHO05D006767 2.7e-11 72.8 162 37.0
A07p01340 Brassica napus HOM05D000274 ORTHO05D021812 6.0e-11 71.6 159 35.2
BolC9t54588H Brassica oleracea HOM05D000274 ORTHO05D006767 7.9e-11 71.2 178 34.8
HanXRQChr10g0284571 Helianthus annuus HOM05D000555 ORTHO05D000646 1.7e-10 70.1 46 71.7
PRCOL_00004774 Prasinoderma coloniale HOM05D000274 ORTHO05D006767 2.5e-09 66.2 84 44.0
Actinidia27432 Actinidia chinensis HOM05D000274 ORTHO05D006767 1.8e-07 60.1 176 29.0
Gohir.D06G104800 Gossypium hirsutum HOM05D000274 ORTHO05D002552 6.9e-07 58.2 84 39.3
Gohir.1Z050580 Gossypium hirsutum HOM05D000274 ORTHO05D002552 2.6e-06 56.2 84 38.1
DCAR_032510 Daucus carota HOM05D000274 ORTHO05D002552 3.4e-06 55.8 84 36.9
Gohir.D09G093050 Gossypium hirsutum HOM05D000274 ORTHO05D002552 4.5e-06 55.5 84 36.9
Sed0002260 Sechium edule HOM05D000274 ORTHO05D002552 7.6e-06 54.7 83 34.9
Sed0002969 Sechium edule HOM05D000274 ORTHO05D002552 7.6e-06 54.7 83 34.9
Sed0019404 Sechium edule HOM05D000274 ORTHO05D002552 7.6e-06 54.7 83 34.9
Gohir.D12G266650 Gossypium hirsutum HOM05D000274 ORTHO05D002552 9.9e-06 54.3 84 36.9


User provided reference genes

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