Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 0.0e+00 2378.2 1112 100.0
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 0.0e+00 1851.3 1112 74.6
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1803.9 1112 72.8
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 0.0e+00 1788.5 1112 72.3
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 0.0e+00 1775.8 1112 71.6
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 0.0e+00 1773.4 1111 71.9
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1772.7 1112 71.4
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1765.7 1112 71.2
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1760.3 1110 71.4
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 0.0e+00 1760.0 1075 74.0
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 0.0e+00 1754.6 1110 71.1
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1754.6 1110 71.4
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 0.0e+00 1751.9 1112 70.6
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 0.0e+00 1751.1 1112 71.0
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1746.9 1066 73.8
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 0.0e+00 1741.9 1112 70.2
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 0.0e+00 1740.7 1096 71.3
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 0.0e+00 1734.2 1115 70.2
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1726.8 1121 69.8
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 0.0e+00 1723.0 1112 70.6
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 0.0e+00 1721.1 1113 69.7
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1719.5 1111 69.8
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 0.0e+00 1716.8 1124 68.7
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1716.8 1110 69.4
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 0.0e+00 1716.4 1111 68.9
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 0.0e+00 1714.1 1111 69.1
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 0.0e+00 1712.2 1112 69.5
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 0.0e+00 1710.3 1093 70.5
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 0.0e+00 1709.1 1099 69.1
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 0.0e+00 1706.0 1049 73.2
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 0.0e+00 1702.2 1111 68.6
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 0.0e+00 1694.9 1124 68.7
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 0.0e+00 1694.9 1110 68.7
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1694.5 1117 69.0
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 0.0e+00 1694.5 1110 68.9
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 0.0e+00 1688.7 1099 68.4
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 0.0e+00 1688.3 1110 68.7
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 0.0e+00 1684.8 1110 68.1
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 0.0e+00 1684.1 1080 70.6
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 0.0e+00 1678.3 1113 67.7
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1675.6 1096 68.8
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 0.0e+00 1674.8 1104 67.8
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 0.0e+00 1672.5 1096 68.2
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1671.0 1110 67.4
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1669.8 1111 68.0
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 0.0e+00 1669.4 1100 67.6
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 0.0e+00 1667.5 1097 68.4
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 0.0e+00 1665.2 1111 67.1
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 0.0e+00 1664.4 1111 67.7
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1663.7 1109 67.7
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 0.0e+00 1663.3 1110 67.4
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1662.9 1109 67.5
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 0.0e+00 1662.9 1112 67.6
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1661.7 1108 67.3
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1661.4 1090 68.4
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 0.0e+00 1661.4 1110 66.9
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 0.0e+00 1660.6 1109 67.3
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 0.0e+00 1660.2 1100 68.0
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 0.0e+00 1659.4 1099 68.0
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1658.3 1115 67.4
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 0.0e+00 1657.9 1112 67.1
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1656.7 1092 68.3
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1656.3 1225 62.9
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 0.0e+00 1656.3 1112 67.0
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 0.0e+00 1652.9 1099 67.5
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 0.0e+00 1652.5 1109 67.1
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1651.0 1110 68.1
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 0.0e+00 1649.0 1112 67.3
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1644.8 1103 67.6
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 0.0e+00 1642.9 1099 67.1
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1640.6 1110 68.4
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 0.0e+00 1637.9 1106 67.0
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1635.2 1095 66.7
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 0.0e+00 1634.0 1094 68.4
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 0.0e+00 1625.9 1125 66.6
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 0.0e+00 1620.1 1124 64.9
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1612.8 1069 67.6
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1610.5 1094 65.8
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 0.0e+00 1597.4 988 72.4
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1592.0 1109 64.9
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 0.0e+00 1570.4 1103 63.9
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 0.0e+00 1565.4 1104 64.2
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 0.0e+00 1556.2 1124 63.5
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 0.0e+00 1554.7 1162 63.3
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 0.0e+00 1519.2 997 69.0
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 0.0e+00 1503.4 1080 63.3
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 0.0e+00 1442.6 914 70.5
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 0.0e+00 1383.2 898 70.5
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 0.0e+00 1332.8 1140 55.1
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 0.0e+00 1324.7 1034 59.3
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 0.0e+00 1294.6 1104 54.8
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1287.7 830 69.8
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 0.0e+00 1258.0 1116 53.1
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1234.9 750 73.1
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 0.0e+00 1230.7 830 66.9
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1175.2 739 70.5
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 0.0e+00 1172.5 761 69.3
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 0.0e+00 1141.7 1120 48.7
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 0.0e+00 1085.5 655 74.4
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 1.9e-308 1062.8 1138 47.5
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 8.1e-288 994.2 690 65.8
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 7.4e-257 891.3 679 61.6
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 1.4e-242 844.0 498 78.3
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 7.7e-222 775.0 518 68.1
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 1.9e-220 770.4 518 68.1
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 4.0e-218 762.7 567 60.1
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 6.4e-168 595.9 1508 29.9
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 7.3e-156 555.8 384 68.8
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 7.1e-151 539.3 612 46.7
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 5.3e-130 469.9 284 76.1
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 1.0e-112 412.5 240 77.1
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 4.2e-111 407.1 272 71.3
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 1.4e-106 392.1 580 39.3
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 9.4e-95 352.8 828 30.6
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 9.5e-87 326.2 259 56.8
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 1.6e-86 325.5 192 70.8
MD07G1040100 Malus domestica HOM05D005112 ORTHO05D006681 2.7e-81 308.1 174 80.5
RcHm_v2.0_Chr1g0324211 Rosa chinensis HOM05D005112 ORTHO05D006681 1.2e-78 299.3 201 68.7
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 5.4e-74 283.9 217 60.4
Nitab4.5_0002123g0050 Nicotiana tabacum HOM05D005112 ORTHO05D006681 1.9e-71 275.4 156 76.9
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 6.4e-59 233.8 209 52.2
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 6.0e-57 227.3 163 65.6
Cpa.g.sc540.4 Carica papaya HOM05D005112 ORTHO05D006681 6.6e-56 223.8 165 61.2
Hma1.2p1_1202F.1_g266800 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 9.0e-45 186.8 110 73.6
MD07G1039900 Malus domestica HOM05D005112 ORTHO05D006681 1.5e-39 169.5 124 64.5
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 4.5e-36 157.9 192 42.2
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 5.8e-36 157.5 133 51.9
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 5.5e-34 151.0 173 44.5
SEGI_07839 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 6.7e-32 144.1 105 59.0
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 5.6e-31 141.0 82 75.6
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 7.4e-31 140.6 156 44.2
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 9.6e-31 140.2 138 47.8
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 1.6e-30 139.4 143 47.6
CSS0018226 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 1.2e-28 133.3 85 68.2
SEGI_07313 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 1.0e-27 130.2 75 72.0
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 3.8e-27 128.3 139 53.2
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 6.7e-24 117.5 132 46.2
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 8.2e-22 110.5 66 66.7
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 5.3e-21 107.8 116 52.6
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 4.5e-20 104.8 53 83.0
FvH4_4g11040 Fragaria vesca HOM05D005112 ORTHO05D006681 7.6e-20 104.0 96 50.0
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 3.6e-17 95.1 110 45.5
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 3.0e-16 92.0 101 44.6
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 3.9e-16 91.7 101 43.6
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 1.6e-14 86.3 58 60.3
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 2.2e-14 85.9 136 39.7
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 2.2e-14 85.9 45 71.1
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 8.2e-14 84.0 45 68.9
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 1.1e-13 83.6 48 68.8
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 1.4e-13 83.2 45 71.1
Actinidia21519 Actinidia chinensis HOM05D000850 ORTHO05D000266 2.4e-13 82.4 56 66.1
Cfa026367 Carpinus fangiana HOM05D005112 ORTHO05D123685 2.9e-11 75.5 376 23.4
CSS0027518 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D111919 3.7e-06 58.5 27 92.6
Lsat_1_v5_gn_2_15720 Lactuca sativa HOM05D001670 ORTHO05D016190 3.7e-06 58.5 38 65.8
BcaC08g43326 Brassica carinata HOM05D005112 ORTHO05D006681 4.8e-06 58.2 61 47.5
Lsat_1_v5_gn_1_71901 Lactuca sativa HOM05D017333 ORTHO05D017063 4.8e-06 58.2 49 53.1
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 6.3e-06 57.8 45 55.6


User provided reference genes

Program Settings