Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006055 Daucus carota HOM05D065036 ORTHO05D045072 2.6e-170 602.1 328 100.0
DCAR_000167 Daucus carota HOM05D065036 ORTHO05D045072 1.9e-43 180.6 239 52.7
Cc01_g11310 Coffea canephora HOM05D000179 ORTHO05D000107 4.1e-30 136.3 348 37.1
Cc06_g21850 Coffea canephora HOM05D000179 ORTHO05D000107 4.1e-30 136.3 348 37.1
Hma1.2p1_1030F.1_g249855 Hydrangea macrophylla HOM05D000179 ORTHO05D000107 4.9e-23 112.8 347 34.9
CSS0045915 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 1.2e-21 108.2 336 34.2
MSTRG.21134 Avicennia marina HOM05D000179 ORTHO05D000107 2.0e-21 107.5 347 34.0
Actinidia07126 Actinidia chinensis HOM05D000179 ORTHO05D000107 2.7e-21 107.1 312 34.9
MSTRG.18652 Avicennia marina HOM05D000179 ORTHO05D000107 3.8e-20 103.2 331 36.9
Actinidia24090 Actinidia chinensis HOM05D000179 ORTHO05D000107 2.5e-19 100.5 316 33.5
Manes.04G023700 Manihot esculenta HOM05D000179 ORTHO05D000107 3.3e-19 100.1 356 33.1
Lj2A1030T63 Lonicera japonica HOM05D000179 ORTHO05D000107 2.1e-18 97.4 309 35.9
GSVIVG01025166001 Vitis vinifera HOM05D000179 ORTHO05D000107 8.0e-18 95.5 332 34.6
Manes.11G142900 Manihot esculenta HOM05D000179 ORTHO05D000107 1.4e-17 94.7 353 30.9
Oeu001261.1 Olea europaea HOM05D000179 ORTHO05D000107 5.2e-17 92.8 343 34.4
Nitab4.5_0000650g0060 Nicotiana tabacum HOM05D000179 ORTHO05D000107 8.9e-17 92.0 300 37.7
CAN.G631.11 Capsicum annuum HOM05D000179 ORTHO05D000107 3.4e-16 90.1 323 32.8
HanXRQChr01g0018281 Helianthus annuus HOM05D000179 ORTHO05D000107 1.3e-15 88.2 259 35.1
Solyc06g075250.3 Solanum lycopersicum HOM05D000179 ORTHO05D000107 3.7e-15 86.7 356 34.6
Lsat_1_v5_gn_6_46760 Lactuca sativa HOM05D000179 ORTHO05D000107 1.4e-14 84.7 265 35.8
Nn2g10748 Nelumbo nucifera HOM05D000179 ORTHO05D000107 5.4e-14 82.8 315 32.4
Nitab4.5_0010509g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 7.0e-14 82.4 301 35.9
Potri.006G129300 Populus trichocarpa HOM05D000179 ORTHO05D000107 2.0e-13 80.9 333 31.2
Thecc.09G257800 Theobroma cacao HOM05D000179 ORTHO05D000107 2.7e-13 80.5 353 31.4
Haze_23885 Corylus avellana HOM05D000179 ORTHO05D000107 4.6e-13 79.7 386 29.3
HanXRQChr07g0195611 Helianthus annuus HOM05D000179 ORTHO05D000107 1.3e-12 78.2 312 32.1
CAN.G1001.24 Capsicum annuum HOM05D000179 ORTHO05D000107 1.7e-12 77.8 365 32.3
Duzib150G0217 Durio zibethinus HOM05D000179 ORTHO05D000107 3.9e-12 76.6 353 30.9
Manes.08G005700 Manihot esculenta HOM05D000179 ORTHO05D000107 3.9e-12 76.6 335 31.0
Sopen06g031640 Solanum pennellii HOM05D000179 ORTHO05D000107 3.9e-12 76.6 355 33.0
Oeu014966.1 Olea europaea HOM05D000179 ORTHO05D000107 5.0e-12 76.3 316 32.3
QL01p022905 Quercus lobata HOM05D000179 ORTHO05D000107 5.0e-12 76.3 362 30.7
Oeu059979.1 Olea europaea HOM05D000179 ORTHO05D000107 6.6e-12 75.9 308 32.8
Peaxi162Scf00101g00099 Petunia axillaris HOM05D000179 ORTHO05D000107 6.6e-12 75.9 294 35.0
COL.COLO4_06848 Corchorus olitorius HOM05D000179 ORTHO05D000107 8.6e-12 75.5 348 31.3
HanXRQChr02g0055651 Helianthus annuus HOM05D000179 ORTHO05D000107 8.6e-12 75.5 263 35.0
HanXRQChr10g0291161 Helianthus annuus HOM05D000179 ORTHO05D000107 8.6e-12 75.5 257 37.0
Lsat_1_v5_gn_1_65581 Lactuca sativa HOM05D000179 ORTHO05D000107 1.1e-11 75.1 299 33.4
TAR633G0506 Trochodendron aralioides HOM05D000179 ORTHO05D000107 1.1e-11 75.1 262 33.2
Lsat_1_v5_gn_2_109221 Lactuca sativa HOM05D000179 ORTHO05D000107 2.5e-11 73.9 303 29.7
QL07p044738 Quercus lobata HOM05D000179 ORTHO05D000107 2.5e-11 73.9 370 27.6
Peaxi162Scf00182g00066 Petunia axillaris HOM05D000179 ORTHO05D000107 3.3e-11 73.6 324 31.8
Manes.09G069600 Manihot esculenta HOM05D000179 ORTHO05D000107 4.3e-11 73.2 306 32.4
Nitab4.5_0000106g0080 Nicotiana tabacum HOM05D000179 ORTHO05D000107 4.3e-11 73.2 306 34.3
Dinv12588 Davidia involucrata HOM05D000179 ORTHO05D000107 5.6e-11 72.8 390 28.7
Nitab4.5_0008025g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 5.6e-11 72.8 326 30.4
Duzib168G1581 Durio zibethinus HOM05D000179 ORTHO05D000107 7.3e-11 72.4 317 31.2
Sabra06G0101800 Salix brachista HOM05D000179 ORTHO05D000107 7.3e-11 72.4 334 31.4
GSVIVG01025658001 Vitis vinifera HOM05D000179 ORTHO05D000107 7.3e-11 72.4 187 38.5
Nitab4.5_0000669g0050 Nicotiana tabacum HOM05D000179 ORTHO05D000107 9.5e-11 72.0 325 29.8
Cfa011349 Carpinus fangiana HOM05D000179 ORTHO05D000107 1.2e-10 71.6 325 30.5
Peaxi162Scf00270g01116 Petunia axillaris HOM05D000179 ORTHO05D000107 1.6e-10 71.2 312 31.4
Rhsim05G0183000 Rhododendron simsii HOM05D000179 ORTHO05D000107 3.6e-10 70.1 325 30.5
Potri.016G088500 Populus trichocarpa HOM05D000179 ORTHO05D000107 4.7e-10 69.7 273 33.3
ECA248G3624 Erigeron canadensis HOM05D000179 ORTHO05D000107 6.2e-10 69.3 261 36.0
HanXRQChr14g0454701 Helianthus annuus HOM05D000179 ORTHO05D000107 6.2e-10 69.3 312 30.8
CiPaw.13G109300 Carya illinoinensis HOM05D000179 ORTHO05D000107 1.4e-09 68.2 362 30.1
DCAR_018822 Daucus carota HOM05D000179 ORTHO05D000107 1.8e-09 67.8 207 34.8
Gohir.A09G106700 Gossypium hirsutum HOM05D000179 ORTHO05D000107 2.3e-09 67.4 276 33.7
Gohir.D09G103400 Gossypium hirsutum HOM05D000179 ORTHO05D000107 2.3e-09 67.4 276 33.7
Gorai.006G120000 Gossypium raimondii HOM05D000179 ORTHO05D000107 2.3e-09 67.4 276 33.7
Actinidia19689 Actinidia chinensis HOM05D000179 ORTHO05D000107 3.1e-09 67.0 253 31.6
Ciclev10028294m.g Citrus clementina HOM05D000179 ORTHO05D000107 3.1e-09 67.0 271 32.8
Gohir.A07G117200 Gossypium hirsutum HOM05D000179 ORTHO05D000107 3.1e-09 67.0 329 29.8
Gohir.D09G146400 Gossypium hirsutum HOM05D000179 ORTHO05D000107 3.1e-09 67.0 299 30.8
Gorai.006G167600 Gossypium raimondii HOM05D000179 ORTHO05D000107 5.2e-09 66.2 237 32.5
SGA_v2.0_scaffold126G33921 Striga asiatica HOM05D000179 ORTHO05D000107 5.2e-09 66.2 270 32.2
Gohir.D07G121500 Gossypium hirsutum HOM05D000179 ORTHO05D000107 6.8e-09 65.9 328 30.2
Gorai.001G131000 Gossypium raimondii HOM05D000179 ORTHO05D000107 6.8e-09 65.9 328 30.2
Cfa017533 Carpinus fangiana HOM05D000179 ORTHO05D000107 8.9e-09 65.5 307 29.0
Duzib128G0139 Durio zibethinus HOM05D000179 ORTHO05D000107 1.2e-08 65.1 213 33.3
Sabra16G0094000 Salix brachista HOM05D000179 ORTHO05D000107 2.0e-08 64.3 330 29.1
MSTRG.12321 Avicennia marina HOM05D000179 ORTHO05D000107 2.6e-08 63.9 282 28.4
FvH4_3g32700 Fragaria vesca HOM05D000179 ORTHO05D000107 2.6e-08 63.9 264 29.9
FAN11G1839 Fragaria x ananassa HOM05D000179 ORTHO05D000107 3.4e-08 63.5 264 29.5
Gohir.A09G150700 Gossypium hirsutum HOM05D000179 ORTHO05D000107 3.4e-08 63.5 299 31.4
Gohir.D04G113900 Gossypium hirsutum HOM05D000179 ORTHO05D000107 3.4e-08 63.5 295 30.2
PGSC0003DMG400003372 Solanum tuberosum HOM05D000179 ORTHO05D000107 3.4e-08 63.5 362 31.5
ECA238G4443 Erigeron canadensis HOM05D000179 ORTHO05D000107 4.4e-08 63.2 261 30.3
FAN21G0099 Fragaria x ananassa HOM05D000179 ORTHO05D000107 4.4e-08 63.2 264 29.9
TAR369G0993 Trochodendron aralioides HOM05D000179 ORTHO05D000107 4.4e-08 63.2 331 29.9
CAN.G1091.4 Capsicum annuum HOM05D000179 ORTHO05D000107 5.8e-08 62.8 275 30.2
FAN16G0493 Fragaria x ananassa HOM05D000179 ORTHO05D000107 5.8e-08 62.8 269 30.9
FAN25G3646 Fragaria x ananassa HOM05D000179 ORTHO05D000107 5.8e-08 62.8 264 29.9
Lsat_1_v5_gn_2_98240 Lactuca sativa HOM05D000179 ORTHO05D000107 5.8e-08 62.8 274 30.7
Haze_20615 Corylus avellana HOM05D000179 ORTHO05D000107 7.5e-08 62.4 295 29.5
Nitab4.5_0000196g0040 Nicotiana tabacum HOM05D000179 ORTHO05D000107 7.5e-08 62.4 349 32.7
Aqoxy4G03249 Aquilegia oxysepala HOM05D000179 ORTHO05D000107 9.8e-08 62.0 378 29.1
Gorai.009G418600 Gossypium raimondii HOM05D000179 ORTHO05D000107 9.8e-08 62.0 290 29.3
Phvul.001G176200 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 9.8e-08 62.0 325 28.0
TAR636G1842 Trochodendron aralioides HOM05D000179 ORTHO05D000107 9.8e-08 62.0 305 29.5
CSS0027710 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 1.7e-07 61.2 172 36.6
COL.COLO4_27043 Corchorus olitorius HOM05D000179 ORTHO05D000107 1.7e-07 61.2 326 30.7
Solyc11g069240.2 Solanum lycopersicum HOM05D000179 ORTHO05D000107 1.7e-07 61.2 269 37.2
Eucgr.B02487 Eucalyptus grandis HOM05D000179 ORTHO05D000107 2.9e-07 60.5 208 29.8
MSTRG.19151 Avicennia marina HOM05D000179 ORTHO05D000107 3.7e-07 60.1 370 29.5
Glyma.03G179700 Glycine max HOM05D000179 ORTHO05D000107 3.7e-07 60.1 171 34.5
PGSC0003DMG400001747 Solanum tuberosum HOM05D000179 ORTHO05D000107 3.7e-07 60.1 301 30.6
MSTRG.5734 Avicennia marina HOM05D000179 ORTHO05D000107 4.9e-07 59.7 345 28.4
Gohir.A04G074900 Gossypium hirsutum HOM05D000179 ORTHO05D000107 4.9e-07 59.7 287 28.9
PGSC0003DMG400010478 Solanum tuberosum HOM05D000179 ORTHO05D000107 8.3e-07 58.9 317 29.0
Peaxi162Scf00472g00007 Petunia axillaris HOM05D000179 ORTHO05D000107 1.1e-06 58.5 298 28.5
TPR.G18262 Trifolium pratense HOM05D000179 ORTHO05D000107 1.1e-06 58.5 287 29.3
Lj5g0010328 Lotus japonicus HOM05D000179 ORTHO05D000107 1.4e-06 58.2 213 31.9
DCAR_009277 Daucus carota HOM05D000179 ORTHO05D000107 1.9e-06 57.8 173 34.7
Oeu001347.1 Olea europaea HOM05D000179 ORTHO05D000107 1.9e-06 57.8 232 33.2
RcHm_v2.0_Chr5g0059771 Rosa chinensis HOM05D000179 ORTHO05D000107 1.9e-06 57.8 246 29.7
SalBow3G2498 Salvia bowleyana HOM05D000179 ORTHO05D000107 1.9e-06 57.8 200 34.0
Solyc10g084180.2 Solanum lycopersicum HOM05D000179 ORTHO05D000107 1.9e-06 57.8 320 28.8
VMungo1383G0655 Vigna mungo HOM05D000179 ORTHO05D000107 1.9e-06 57.8 325 28.0
PSO339G1214 Papaver somniferum HOM05D000179 ORTHO05D000107 2.4e-06 57.4 192 33.3
Glyma.19G180400 Glycine max HOM05D000179 ORTHO05D000107 3.2e-06 57.0 303 26.7
vmacro20043 Vaccinium macrocarpon HOM05D000179 ORTHO05D000107 5.4e-06 56.2 224 30.8
Sopen09g002420 Solanum pennellii HOM05D000179 ORTHO05D000107 7.0e-06 55.8 299 33.1
Duzib093G0684 Durio zibethinus HOM05D000179 ORTHO05D000107 9.2e-06 55.5 214 32.7
Lalb_Chr02g0156221 Lupinus albus HOM05D000179 ORTHO05D000107 9.2e-06 55.5 168 38.1


User provided reference genes

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