Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 3.7e-312 1074.3 536 100.0
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 9.1e-253 876.7 534 82.4
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.1e-250 869.8 533 81.8
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 2.5e-250 868.6 521 82.0
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 7.2e-250 867.1 522 81.4
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 5.1e-248 860.9 517 83.6
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 4.4e-247 857.8 518 82.2
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 1.4e-245 852.8 501 83.4
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 1.8e-245 852.4 522 80.7
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 5.9e-244 847.4 523 80.5
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 5.0e-243 844.3 512 81.2
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 1.1e-242 843.2 514 80.5
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 3.2e-242 841.6 511 80.6
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 1.2e-241 839.7 512 80.9
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 1.8e-240 835.9 521 79.7
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 3.0e-240 835.1 498 81.7
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 1.7e-238 829.3 518 78.4
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 4.1e-237 824.7 517 80.5
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 1.7e-235 819.3 511 81.0
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 8.5e-235 817.0 514 79.2
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 1.1e-234 816.6 502 79.7
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 1.1e-234 816.6 519 79.4
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 3.2e-234 815.1 518 80.3
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 4.2e-234 814.7 502 80.5
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 7.2e-234 813.9 517 79.5
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.2e-233 813.1 524 78.4
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.1e-233 812.4 517 79.3
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.1e-233 812.4 514 78.4
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.7e-233 812.0 517 78.9
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.6e-233 811.6 517 79.3
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 3.0e-232 808.5 511 79.3
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 6.8e-232 807.4 517 79.1
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 1.2e-231 806.6 511 78.5
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 1.5e-231 806.2 516 78.7
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 4.4e-231 804.7 510 78.0
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 9.8e-231 803.5 541 74.7
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 2.2e-230 802.4 522 77.6
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 4.8e-230 801.2 541 76.2
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 6.3e-230 800.8 517 76.6
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 1.1e-229 800.0 520 76.2
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 1.8e-229 799.3 529 76.9
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 4.1e-229 798.1 517 78.5
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 4.1e-229 798.1 590 70.8
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 4.5e-228 794.7 529 76.6
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 1.3e-227 793.1 529 76.2
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 1.7e-227 792.7 511 77.7
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 3.8e-227 791.6 512 78.5
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 5.0e-227 791.2 519 78.0
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 4.2e-226 788.1 515 77.7
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 1.6e-225 786.2 513 76.0
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 2.7e-225 785.4 524 77.5
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 3.6e-225 785.0 515 77.1
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 4.7e-225 784.6 509 76.8
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 1.0e-224 783.5 521 76.6
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 1.4e-224 783.1 514 77.4
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 5.2e-224 781.2 515 76.5
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 1.2e-223 780.0 509 77.6
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.3e-222 776.5 520 75.2
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 1.7e-222 776.2 550 73.3
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 4.9e-222 774.6 490 79.2
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 7.0e-221 770.8 478 79.3
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 1.2e-220 770.0 520 74.8
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 3.5e-220 768.5 511 76.1
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 6.6e-219 764.2 512 75.4
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 6.6e-219 764.2 507 76.3
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 8.6e-219 763.8 516 75.6
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 1.9e-218 762.7 509 75.2
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 2.1e-217 759.2 543 73.3
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.8e-216 756.1 505 73.9
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 5.2e-216 754.6 553 70.7
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 5.2e-216 754.6 511 74.2
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.5e-215 753.1 517 74.7
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 1.3e-214 750.0 514 73.3
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 2.2e-214 749.2 515 74.6
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 4.9e-214 748.0 513 73.7
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 2.4e-213 745.7 509 74.1
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 4.1e-213 745.0 476 78.6
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 2.3e-211 739.2 466 79.8
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 2.5e-210 735.7 513 72.7
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 2.3e-208 729.2 510 73.3
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 2.6e-207 725.7 512 71.1
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 4.1e-205 718.4 516 70.9
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 4.1e-205 718.4 516 70.9
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 4.6e-204 714.9 512 70.9
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 2.3e-203 712.6 523 69.4
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 3.6e-201 705.3 528 71.4
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 1.4e-200 703.4 439 80.0
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 2.6e-199 699.1 512 68.9
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 6.4e-198 694.5 504 70.2
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 5.2e-192 674.9 523 68.3
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 4.4e-191 671.8 481 71.3
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 7.6e-191 671.0 481 71.3
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 9.2e-189 664.1 522 66.9
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 2.7e-188 662.5 519 66.5
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.0e-187 660.6 524 64.1
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.3e-187 659.4 423 78.5
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 7.3e-186 654.4 531 65.5
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 2.8e-185 652.5 476 71.4
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 8.9e-184 647.5 369 87.0
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 7.8e-180 634.4 551 58.6
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 6.6e-179 631.3 530 63.6
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 4.3e-178 628.6 369 85.1
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 7.3e-178 627.9 493 65.1
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 2.1e-177 626.3 439 72.9
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 2.4e-173 612.8 484 64.5
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 3.0e-171 605.9 484 64.3
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 1.5e-167 593.6 368 80.2
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 3.8e-166 589.0 393 74.8
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 3.7e-161 572.4 387 75.5
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 1.1e-160 570.9 334 84.4
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 9.0e-160 567.8 520 57.5
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 2.9e-158 562.8 475 61.5
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 2.9e-158 562.8 461 64.6
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 6.5e-158 561.6 492 59.1
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 2.7e-156 556.2 491 58.5
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 1.5e-154 550.4 540 54.1
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 2.1e-153 546.6 362 77.1
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 2.3e-147 526.6 500 55.4
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.0e-139 501.1 410 65.4
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 2.3e-139 500.0 544 50.2
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 2.0e-135 486.9 289 81.7
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 7.2e-133 478.4 365 68.2
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 6.1e-132 475.3 345 73.6
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 3.6e-116 422.9 515 45.4
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 8.0e-116 421.8 478 53.1
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 9.5e-109 398.3 371 60.4
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 8.8e-107 391.7 295 68.1
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 5.7e-106 389.0 327 64.5
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 6.2e-92 342.4 325 59.7
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 2.7e-87 327.0 217 74.7
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 3.3e-77 293.5 233 64.8
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.4e-75 287.3 164 83.5
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.2e-74 285.0 219 64.4
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 1.7e-73 281.2 396 40.7
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 8.4e-65 252.3 147 84.4
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 2.7e-63 247.3 142 83.1
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 4.6e-63 246.5 150 80.0
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 4.6e-63 246.5 308 43.5
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 2.4e-59 234.2 222 58.6
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 1.8e-54 218.0 330 40.9
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 6.2e-44 183.0 195 53.8
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 6.9e-43 179.5 165 58.8
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 9.3e-40 169.1 100 79.0
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 9.7e-37 159.1 118 66.9
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 1.5e-29 135.2 390 27.7
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.0e-25 122.5 146 53.4
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 2.9e-25 120.9 68 82.4
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 9.4e-24 115.9 449 26.5
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 1.5e-18 98.6 65 76.9
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 3.8e-17 94.0 82 58.5
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 9.7e-13 79.3 72 55.6
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 8.2e-12 76.3 45 80.0
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 1.5e-08 65.5 52 57.7
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 2.5e-08 64.7 38 78.9
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.5e-08 64.7 54 53.7
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 5.2e-06 57.0 64 51.6


User provided reference genes

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