Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 7.9e-166 587.0 296 100.0
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 3.7e-131 471.9 292 86.3
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 3.0e-120 435.6 302 74.2
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 2.1e-118 429.5 294 74.1
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 2.8e-118 429.1 293 75.4
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 2.3e-117 426.0 294 75.5
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 6.8e-117 424.5 294 75.2
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 3.7e-115 418.7 294 74.1
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 7.8e-113 411.0 293 72.0
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 1.9e-111 406.4 295 71.5
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 4.3e-111 405.2 293 70.0
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 7.3e-111 404.4 302 70.9
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 9.5e-111 404.1 296 71.3
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 1.6e-110 403.3 294 70.1
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.6e-110 403.3 293 69.6
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 2.1e-110 402.9 293 70.0
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 4.7e-110 401.7 294 70.1
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 4.7e-110 401.7 294 70.1
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 1.4e-109 400.2 283 71.7
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 5.2e-109 398.3 294 72.1
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 6.8e-109 397.9 283 70.3
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 8.9e-109 397.5 284 71.1
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 8.9e-109 397.5 294 69.7
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 8.9e-109 397.5 289 70.2
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 2.0e-108 396.4 295 70.2
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 2.0e-108 396.4 294 68.7
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 2.0e-108 396.4 297 69.0
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 7.5e-108 394.4 292 69.5
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 9.8e-108 394.0 294 70.1
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 2.2e-107 392.9 292 69.2
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 1.4e-106 390.2 295 68.5
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 1.9e-106 389.8 295 69.5
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 2.4e-106 389.4 292 68.2
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 2.4e-106 389.4 308 67.2
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 4.1e-106 388.7 294 69.7
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 4.1e-106 388.7 308 66.9
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 1.6e-105 386.7 297 68.0
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 2.1e-105 386.3 290 70.0
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 2.1e-105 386.3 293 68.9
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 2.7e-105 386.0 300 67.0
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 3.5e-105 385.6 295 67.8
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 4.6e-105 385.2 302 66.9
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 6.0e-105 384.8 292 67.5
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 7.8e-105 384.4 297 66.3
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 1.0e-104 384.0 283 70.3
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 1.0e-104 384.0 293 68.6
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 1.0e-104 384.0 293 67.6
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 1.7e-104 383.3 294 67.3
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 1.7e-104 383.3 293 67.2
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 3.0e-104 382.5 298 66.4
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 6.6e-104 381.3 292 68.2
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 1.5e-103 380.2 285 66.7
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 1.9e-103 379.8 298 66.8
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 5.6e-103 378.3 281 70.8
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 7.3e-103 377.9 286 69.9
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 9.5e-103 377.5 291 68.0
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 4.7e-102 375.2 284 67.6
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 6.2e-102 374.8 293 66.6
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 6.2e-102 374.8 299 66.2
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 6.2e-102 374.8 297 66.3
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 8.1e-102 374.4 292 66.4
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 1.1e-101 374.0 300 64.3
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 1.4e-101 373.6 282 68.8
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 1.4e-101 373.6 301 65.4
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 1.4e-101 373.6 284 69.0
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 3.1e-101 372.5 284 68.0
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 3.1e-101 372.5 294 65.6
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 3.1e-101 372.5 299 67.9
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 4.0e-101 372.1 290 67.6
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 1.2e-100 370.5 292 66.8
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 1.5e-100 370.2 282 69.5
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 2.0e-100 369.8 282 68.8
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 2.0e-100 369.8 281 66.9
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 7.6e-100 367.9 283 68.6
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 1.7e-99 366.7 280 68.2
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 2.2e-99 366.3 293 67.9
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 4.9e-99 365.2 285 66.3
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 4.9e-99 365.2 279 67.7
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 8.4e-99 364.4 292 64.7
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 8.4e-99 364.4 293 64.8
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.4e-98 363.6 295 64.1
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 1.4e-98 363.6 287 65.5
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 2.4e-98 362.8 294 64.6
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.4e-98 362.8 295 64.4
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 3.2e-98 362.5 295 64.7
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 7.1e-98 361.3 293 64.8
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 1.2e-97 360.5 297 63.6
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 1.2e-97 360.5 284 65.8
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.6e-97 360.1 284 65.8
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 1.6e-97 360.1 284 65.8
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.1e-97 359.8 284 65.8
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 1.7e-96 356.7 291 65.6
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 1.7e-96 356.7 293 65.9
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 1.7e-96 356.7 286 67.1
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 2.3e-96 356.3 277 67.5
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 3.0e-96 355.9 295 65.1
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 5.1e-96 355.1 218 80.7
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 8.6e-96 354.4 280 66.4
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 7.3e-95 351.3 279 65.9
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 9.6e-95 350.9 291 63.9
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 2.1e-94 349.7 291 64.6
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 2.1e-94 349.7 294 62.9
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 3.1e-93 345.9 261 67.4
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 2.2e-91 339.7 273 64.8
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 2.2e-91 339.7 283 62.9
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 2.2e-91 339.7 297 62.6
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 1.2e-89 334.0 274 65.3
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 2.7e-89 332.8 308 59.4
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 1.7e-88 330.1 292 61.0
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 3.9e-88 328.9 279 63.1
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 5.1e-88 328.6 238 69.3
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 8.1e-86 321.2 296 59.8
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 2.4e-85 319.7 285 60.7
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 8.4e-83 311.2 231 70.1
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 1.1e-82 310.8 197 75.6
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 5.4e-82 308.5 269 63.2
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.1e-81 306.6 229 68.1
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 1.5e-79 300.4 186 78.0
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.4e-77 293.9 239 66.5
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 1.1e-74 284.3 288 57.3
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 1.6e-73 280.4 295 50.5
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 1.3e-70 270.8 287 54.7
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 5.8e-68 261.9 226 60.6
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 1.7e-67 260.4 248 56.9
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 5.5e-66 255.4 250 55.2
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 2.7e-65 253.1 206 64.1
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 1.9e-63 246.9 219 60.7
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 9.6e-63 244.6 226 60.2
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 1.3e-62 244.2 288 49.7
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 2.4e-61 240.0 200 64.0
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 6.9e-61 238.4 228 58.3
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 3.4e-60 236.1 198 64.6
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 3.4e-60 236.1 224 58.5
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 1.3e-56 224.2 201 57.2
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 3.0e-56 223.0 139 74.8
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 5.7e-55 218.8 139 74.8
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 2.8e-54 216.5 225 53.3
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 3.7e-54 216.1 234 53.0
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 3.1e-53 213.0 221 54.8
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 5.3e-53 212.2 136 77.9
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 5.3e-53 212.2 192 61.5
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 5.5e-50 202.2 130 75.4
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 8.8e-48 194.9 193 50.8
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 3.4e-44 183.0 240 48.3
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 3.5e-36 156.4 220 44.5
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 5.5e-34 149.1 225 38.7
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 8.8e-32 141.7 188 46.3
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 2.6e-31 140.2 119 54.6
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 1.3e-30 137.9 178 46.6
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 1.3e-30 137.9 178 46.6
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 2.8e-30 136.7 178 46.6
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 2.7e-25 120.2 125 56.0
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 4.7e-25 119.4 82 70.7
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.8e-24 117.5 174 47.1
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 2.3e-24 117.1 80 70.0
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 4.0e-24 116.3 81 69.1
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 6.8e-24 115.5 276 36.2
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 2.2e-22 110.5 118 48.3
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 6.3e-22 109.0 79 69.6
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 4.1e-21 106.3 101 57.4
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 4.1e-21 106.3 124 46.0
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 5.9e-20 102.4 110 54.5
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.5e-18 97.8 65 67.7
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.2e-15 88.2 79 57.0
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 4.4e-15 86.3 179 35.8
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 1.3e-11 74.7 37 86.5
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 2.1e-09 67.4 35 71.4
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 4.7e-09 66.2 72 43.1
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 3.0e-08 63.5 77 45.5
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 5.2e-08 62.8 62 51.6
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.2e-07 61.6 72 48.6
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 9.8e-07 58.5 38 57.9
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 1.3e-06 58.2 36 66.7
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 1.3e-06 58.2 36 66.7
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 1.3e-06 58.2 99 39.4
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 2.9e-06 57.0 71 46.5
A02p43170 Brassica napus HOM05D003601 ORTHO05D013806 3.7e-06 56.6 89 37.1
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 3.7e-06 56.6 72 41.7
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 4.9e-06 56.2 46 54.3
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 4.9e-06 56.2 46 54.3
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 4.9e-06 56.2 32 65.6


User provided reference genes

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