Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 5.5e-156 554.3 284 100.0
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 4.7e-131 471.5 292 86.3
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 6.8e-90 334.7 299 62.9
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 5.4e-87 325.1 293 62.5
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 9.2e-87 324.3 294 60.9
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 7.8e-86 321.2 294 62.2
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 1.7e-85 320.1 293 61.4
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 1.2e-83 313.9 294 61.2
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 5.2e-82 308.5 293 59.7
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 6.8e-82 308.1 312 56.7
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 4.4e-81 305.4 293 57.7
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 1.7e-80 303.5 299 59.5
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 3.7e-80 302.4 294 57.5
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 4.9e-80 302.0 293 57.3
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 2.4e-79 299.7 283 58.7
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.2e-79 299.3 294 57.5
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.2e-79 299.3 294 57.5
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 9.2e-79 297.7 293 56.7
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 1.2e-78 297.4 283 57.2
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 1.2e-78 297.4 294 59.9
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 2.1e-78 296.6 296 58.1
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 3.5e-78 295.8 289 57.4
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 4.6e-78 295.4 295 57.3
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 7.8e-78 294.7 294 57.8
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 1.3e-77 293.9 292 56.8
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 1.3e-77 293.9 294 56.8
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 1.7e-77 293.5 284 58.1
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 1.7e-77 293.5 295 56.3
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 3.0e-77 292.7 294 55.8
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 6.6e-77 291.6 297 55.9
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 3.3e-76 289.3 292 56.2
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 4.3e-76 288.9 292 55.5
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 7.3e-76 288.1 295 56.9
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 2.8e-75 286.2 308 54.9
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 4.7e-75 285.4 308 54.5
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 1.1e-74 284.3 294 56.8
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 1.4e-74 283.9 300 55.0
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 3.1e-74 282.7 315 52.7
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 3.1e-74 282.7 293 56.0
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 4.0e-74 282.3 290 56.9
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 5.2e-74 282.0 292 54.8
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 6.8e-74 281.6 299 54.2
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.2e-73 280.8 302 54.0
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 1.5e-73 280.4 293 54.9
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 1.5e-73 280.4 285 54.0
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 2.6e-73 279.6 283 56.9
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 2.6e-73 279.6 293 55.3
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 2.6e-73 279.6 292 55.1
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 2.6e-73 279.6 293 54.6
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 3.4e-73 279.3 298 53.7
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 5.8e-73 278.5 294 54.1
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 7.6e-73 278.1 298 54.4
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 1.3e-72 277.3 297 53.5
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 1.3e-72 277.3 286 57.3
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 6.4e-72 275.0 284 56.3
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 8.4e-72 274.6 293 53.9
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 8.4e-72 274.6 281 57.3
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 1.4e-71 273.9 291 55.3
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 1.9e-71 273.5 298 53.4
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 4.1e-71 272.3 284 54.6
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 4.1e-71 272.3 292 54.8
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 5.4e-71 271.9 289 54.3
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 2.1e-70 270.0 292 53.4
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 2.1e-70 270.0 297 53.5
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 3.5e-70 269.2 282 55.3
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 3.5e-70 269.2 299 55.2
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 7.8e-70 268.1 284 54.6
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 7.8e-70 268.1 294 52.7
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 1.0e-69 267.7 283 55.5
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 1.3e-69 267.3 300 51.7
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 1.7e-69 266.9 301 52.8
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 3.0e-69 266.2 294 52.4
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 5.1e-69 265.4 282 56.0
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 5.1e-69 265.4 281 53.4
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 1.1e-68 264.2 281 53.0
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 1.1e-68 264.2 292 52.7
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 2.5e-68 263.1 280 54.6
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 4.3e-68 262.3 293 54.9
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 4.3e-68 262.3 287 53.0
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.2e-67 260.8 285 53.0
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 1.2e-67 260.8 279 54.1
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 1.2e-67 260.8 293 52.2
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.1e-67 260.0 303 51.2
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 2.8e-67 259.6 297 51.5
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 3.6e-67 259.2 295 51.9
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 3.6e-67 259.2 285 54.0
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 4.7e-67 258.8 293 52.2
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 8.1e-67 258.1 280 53.9
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 8.1e-67 258.1 295 51.9
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 1.1e-66 257.7 296 52.4
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 1.1e-66 257.7 284 52.8
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 1.1e-66 257.7 291 53.6
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.4e-66 257.3 284 52.8
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 1.4e-66 257.3 284 52.8
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.8e-66 256.9 284 52.8
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 1.8e-66 256.9 295 53.2
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 4.0e-66 255.8 293 52.9
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 5.2e-66 255.4 218 64.2
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 5.8e-65 251.9 291 51.9
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 3.8e-64 249.2 291 52.2
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 8.4e-64 248.1 279 52.7
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 4.2e-63 245.7 294 50.0
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 9.3e-63 244.6 258 53.5
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 3.5e-62 242.7 307 47.9
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 2.3e-61 240.0 264 53.8
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 6.6e-61 238.4 283 49.8
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 1.1e-60 237.7 297 50.2
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 1.9e-60 236.9 273 51.3
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 1.9e-60 236.9 238 55.9
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 1.4e-58 230.7 279 50.2
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 4.0e-58 229.2 292 48.3
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 1.7e-56 223.8 296 48.0
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 4.2e-55 219.2 285 47.7
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 7.9e-54 214.9 231 55.0
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.7e-53 213.8 229 54.1
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 1.1e-52 211.1 197 57.4
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.9e-52 210.3 269 50.6
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 5.3e-50 202.2 185 59.5
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 3.4e-49 199.5 239 52.3
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 7.6e-49 198.4 186 58.6
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.9e-47 193.7 178 60.7
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 4.2e-47 192.6 184 59.2
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 4.6e-46 189.1 199 54.3
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 4.6e-46 189.1 193 55.4
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 1.1e-44 184.5 288 44.8
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 3.3e-44 183.0 300 39.0
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 1.1e-42 177.9 287 43.2
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 8.4e-40 168.3 188 53.7
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 1.1e-39 167.9 226 46.0
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 5.5e-39 165.6 248 44.0
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 3.9e-37 159.5 250 42.0
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 3.3e-36 156.4 226 45.6
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 5.7e-36 155.6 188 52.1
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.8e-35 153.3 184 52.2
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 6.3e-35 152.1 287 38.3
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 5.0e-32 142.5 139 56.1
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 1.0e-29 134.8 192 45.3
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 6.7e-29 132.1 201 41.8
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 2.5e-28 130.2 201 44.3
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 4.3e-28 129.4 139 51.1
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 1.3e-24 117.9 144 52.1
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 1.3e-24 117.9 125 53.6
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 2.9e-24 116.7 234 37.6
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 1.2e-22 111.3 261 34.1
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 2.7e-22 110.2 130 50.8
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 3.6e-22 109.8 212 34.9
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.8e-21 107.5 174 44.3
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 3.3e-20 103.2 78 65.4
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 1.3e-19 101.3 240 37.1
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.1e-18 98.2 75 66.7
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 1.4e-18 97.8 74 64.9
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 4.1e-18 96.3 124 47.6
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 2.0e-17 94.0 170 38.8
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 4.7e-14 82.8 73 56.2
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 4.7e-14 82.8 179 34.6
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 2.6e-12 77.0 226 29.6
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 2.2e-11 73.9 60 63.3
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 2.6e-09 67.0 79 44.3
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 2.6e-09 67.0 65 53.8
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 5.9e-09 65.9 38 65.8
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.7e-08 64.3 57 52.6
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 1.7e-08 64.3 72 41.7
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 1.5e-07 61.2 66 43.9
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 2.5e-07 60.5 62 50.0
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 2.5e-07 60.5 72 47.2
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 2.7e-06 57.0 99 38.4
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 4.7e-06 56.2 38 55.3
Sabra17G0123400 Salix brachista HOM05D000390 ORTHO05D001192 4.7e-06 56.2 122 34.4
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 6.1e-06 55.8 36 63.9
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 6.1e-06 55.8 36 63.9


User provided reference genes

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