Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004774 Daucus carota HOM05D006330 ORTHO05D008013 9.2e-190 666.8 347 100.0
Lsat_1_v5_gn_9_16880 Lactuca sativa HOM05D006330 ORTHO05D008013 3.7e-122 442.2 312 72.4
Cc01_g15880 Coffea canephora HOM05D006330 ORTHO05D008013 5.9e-120 434.9 312 71.2
Cfa010572 Carpinus fangiana HOM05D006330 ORTHO05D008013 5.5e-118 428.3 323 68.7
HanXRQChr07g0190561 Helianthus annuus HOM05D006330 ORTHO05D008013 5.5e-118 428.3 293 74.1
Haze_03505 Corylus avellana HOM05D006330 ORTHO05D008013 9.4e-118 427.6 317 69.1
Lj2C1112G6 Lonicera japonica HOM05D006330 ORTHO05D008013 3.6e-117 425.6 302 72.2
QL09p047707 Quercus lobata HOM05D006330 ORTHO05D008013 4.7e-117 425.2 329 68.7
ECA247G1307 Erigeron canadensis HOM05D006330 ORTHO05D008013 1.0e-116 424.1 247 81.8
MSTRG.21296 Avicennia marina HOM05D006330 ORTHO05D008013 1.4e-116 423.7 318 70.1
Sopen09g015980 Solanum pennellii HOM05D006330 ORTHO05D008013 5.2e-116 421.8 243 85.2
SGA_v2.0_scaffold231G43447 Striga asiatica HOM05D006330 ORTHO05D008013 6.8e-116 421.4 314 70.1
RcHm_v2.0_Chr6g0282221 Rosa chinensis HOM05D006330 ORTHO05D008013 8.8e-116 421.0 312 70.5
GSVIVG01001532001 Vitis vinifera HOM05D006330 ORTHO05D008013 2.6e-115 419.5 332 66.3
FAN15G1514 Fragaria x ananassa HOM05D006330 ORTHO05D008013 1.3e-114 417.2 313 70.3
Ciclev10015989m.g Citrus clementina HOM05D006330 ORTHO05D008013 3.7e-114 415.6 242 83.5
Gorai.007G161200 Gossypium raimondii HOM05D006330 ORTHO05D008013 3.7e-114 415.6 247 83.0
Atru.chr6.3528 Acer truncatum HOM05D006330 ORTHO05D008013 4.8e-114 415.2 247 83.8
SalBow3G0290 Salvia bowleyana HOM05D006330 ORTHO05D008013 6.3e-114 414.8 327 67.3
FvH4_2g17480 Fragaria vesca HOM05D006330 ORTHO05D008013 1.8e-113 413.3 312 69.2
TAR362G0826 Trochodendron aralioides HOM05D006330 ORTHO05D008013 1.8e-113 413.3 246 82.1
Gohir.D11G150300 Gossypium hirsutum HOM05D006330 ORTHO05D008013 2.4e-113 412.9 247 82.6
CiPaw.13G055600 Carya illinoinensis HOM05D006330 ORTHO05D008013 7.0e-113 411.4 313 69.0
Duzib133G1456 Durio zibethinus HOM05D006330 ORTHO05D008013 7.0e-113 411.4 335 66.0
Thecc.01G207700 Theobroma cacao HOM05D006330 ORTHO05D008013 1.2e-112 410.6 240 84.2
Nn7g37444 Nelumbo nucifera HOM05D006330 ORTHO05D008013 2.7e-112 409.5 242 82.2
FAN24G2605 Fragaria x ananassa HOM05D006330 ORTHO05D008013 3.5e-112 409.1 325 66.5
Manes.12G055500 Manihot esculenta HOM05D006330 ORTHO05D008013 4.5e-112 408.7 265 77.4
Rhsim01G0247700 Rhododendron simsii HOM05D006330 ORTHO05D008013 4.5e-112 408.7 311 67.2
Sc05g0001630 Simmondsia chinensis HOM05D006330 ORTHO05D008013 4.5e-112 408.7 244 82.0
Aqoxy2G02383 Aquilegia oxysepala HOM05D006330 ORTHO05D008013 5.9e-112 408.3 240 82.9
CANSAT01G2136 Cannabis sativa HOM05D006330 ORTHO05D008013 5.9e-112 408.3 312 67.6
Actinidia34530 Actinidia chinensis HOM05D006330 ORTHO05D008013 7.7e-112 407.9 306 68.0
Eucgr.K02361 Eucalyptus grandis HOM05D006330 ORTHO05D008013 7.7e-112 407.9 329 67.2
Gohir.A11G143900 Gossypium hirsutum HOM05D006330 ORTHO05D008013 1.0e-111 407.5 247 81.4
MBI10_g35385_MAGBIO Magnolia biondii HOM05D006330 ORTHO05D008013 1.3e-111 407.1 240 83.3
Actinidia23802 Actinidia chinensis HOM05D006330 ORTHO05D008013 1.7e-111 406.8 240 82.1
Prupe.8G187200 Prunus persica HOM05D006330 ORTHO05D008013 2.9e-111 406.0 247 80.2
MD10G1148200 Malus domestica HOM05D006330 ORTHO05D008013 3.8e-111 405.6 321 66.7
TWI36G1481 Tripterygium wilfordii HOM05D006330 ORTHO05D008013 3.8e-111 405.6 244 82.4
PSO675G8704 Papaver somniferum HOM05D006330 ORTHO05D008013 6.5e-111 404.8 340 64.7
Potri.014G175500 Populus trichocarpa HOM05D006330 ORTHO05D008013 1.1e-110 404.1 247 81.8
PGR044G2230 Punica granatum HOM05D006330 ORTHO05D008013 1.1e-110 404.1 242 82.6
Psat4g208240 Pisum sativum HOM05D006330 ORTHO05D008013 1.5e-110 403.7 258 79.8
Os11g0247400 Oryza sativa ssp. japonica HOM05D006330 ORTHO05D008013 1.9e-110 403.3 244 82.0
Migut.D00775 Erythranthe guttata HOM05D006330 ORTHO05D008013 7.2e-110 401.4 247 79.4
Hma1.2p1_0161F.1_g071650 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 7.2e-110 401.4 240 82.5
Glyma.07G124200 Glycine max HOM05D006330 ORTHO05D008013 9.4e-110 401.0 260 76.9
EL10Ac5g10587 Beta vulgaris HOM05D006330 ORTHO05D008013 1.6e-109 400.2 264 73.5
Glyma.03G097100 Glycine max HOM05D006330 ORTHO05D008013 1.6e-109 400.2 272 74.3
Zm00001eb168340 Zea mays HOM05D006330 ORTHO05D008013 3.6e-109 399.1 241 81.7
ClCG09G008360 Citrullus lanatus HOM05D006330 ORTHO05D008013 6.1e-109 398.3 289 70.6
Medtr8g010130 Medicago truncatula HOM05D006330 ORTHO05D008013 6.1e-109 398.3 247 79.4
VMungo0331G1131 Vigna mungo HOM05D006330 ORTHO05D008013 8.0e-109 397.9 247 79.4
Phvul.010G036400 Phaseolus vulgaris HOM05D006330 ORTHO05D008013 1.4e-108 397.1 247 78.5
HPP92_007591 Vanilla planifolia HOM05D006330 ORTHO05D008013 1.4e-108 397.1 244 79.1
THA.LOC104804704 Tarenaya hassleriana HOM05D006330 ORTHO05D008013 2.3e-108 396.4 240 80.8
TPR.G17377 Trifolium pratense HOM05D006330 ORTHO05D008013 2.3e-108 396.4 258 77.9
ATR0743G141 Amborella trichopoda HOM05D006330 ORTHO05D008013 5.2e-108 395.2 242 81.4
vmacro14689 Vaccinium macrocarpon HOM05D006330 ORTHO05D008013 6.8e-108 394.8 266 74.8
MELO3C021126.2 Cucumis melo HOM05D006330 ORTHO05D008013 1.5e-107 393.7 289 69.9
CsaV3_7G026730 Cucumis sativus L. HOM05D006330 ORTHO05D008013 2.6e-107 392.9 282 70.6
Sed0009827 Sechium edule HOM05D006330 ORTHO05D008013 1.3e-106 390.6 279 71.7
Ca_23158_v3 Cicer arietinum L. HOM05D006330 ORTHO05D008013 1.7e-106 390.2 287 71.4
Lalb_Chr12g0210221 Lupinus albus HOM05D006330 ORTHO05D008013 4.8e-106 388.7 240 80.0
AUR62008069 Chenopodium quinoa HOM05D006330 ORTHO05D008013 2.4e-105 386.3 241 78.4
CDE02G1604 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 3.1e-105 386.0 244 77.0
arahy.Tifrunner.gnm1.ann1.3RIK1P Arachis hypogaea HOM05D006330 ORTHO05D008013 4.1e-105 385.6 245 78.0
arahy.Tifrunner.gnm1.ann1.84ZR2Z Arachis hypogaea HOM05D006330 ORTHO05D008013 1.2e-104 384.0 245 78.0
Ciclev10018050m.g Citrus clementina HOM05D006330 ORTHO05D008013 1.6e-104 383.6 228 83.3
Aa31sc18G40 Aethionema arabicum HOM05D006330 ORTHO05D008013 2.6e-99 366.3 248 73.0
Sabra14G0134300 Salix brachista HOM05D006330 ORTHO05D008013 4.4e-99 365.5 250 76.4
Carub.0003s2579 Capsella rubella HOM05D006330 ORTHO05D008013 2.8e-98 362.8 257 69.6
Mapoly0006s0124 Marchantia polymorpha HOM05D006330 ORTHO05D008013 3.7e-98 362.5 253 69.6
Hund09482 Selenicereus undatus HOM05D006330 ORTHO05D008013 4.9e-98 362.1 224 80.8
AL3G41590 Arabidopsis lyrata HOM05D006330 ORTHO05D008013 9.2e-97 357.8 251 68.9
COL.COLO4_34269 Corchorus olitorius HOM05D006330 ORTHO05D008013 4.5e-96 355.5 219 81.7
AT3G25470 Arabidopsis thaliana HOM05D006330 ORTHO05D008013 5.9e-96 355.1 251 68.1
Sp3g22990 Schrenkiella parvula HOM05D006330 ORTHO05D008013 1.3e-95 354.0 251 70.1
CARHR101770 Cardamine hirsuta HOM05D006330 ORTHO05D008013 1.7e-95 353.6 251 69.7
Thhalv10002617m.g Eutrema salsugineum HOM05D006330 ORTHO05D008013 2.3e-95 353.2 244 71.3
Pp3c24_1560 Physcomitrium patens HOM05D006330 ORTHO05D008013 2.9e-95 352.8 241 69.7
BcaC06g35817 Brassica carinata HOM05D006330 ORTHO05D008013 8.6e-95 351.3 247 70.0
C03p54570 Brassica napus HOM05D006330 ORTHO05D008013 1.1e-94 350.9 244 70.9
BolC3t17744H Brassica oleracea HOM05D006330 ORTHO05D008013 1.1e-94 350.9 244 70.9
A07p06930 Brassica napus HOM05D006330 ORTHO05D008013 1.9e-94 350.1 247 69.6
BraA07t28484Z Brassica rapa HOM05D006330 ORTHO05D008013 1.9e-94 350.1 247 69.6
BcaB08g34453 Brassica carinata HOM05D006330 ORTHO05D008013 2.5e-94 349.7 240 71.2
A03p44190 Brassica napus HOM05D006330 ORTHO05D008013 1.2e-93 347.4 244 70.5
BolC7t41520H Brassica oleracea HOM05D006330 ORTHO05D008013 2.1e-93 346.7 248 69.8
C07p10530 Brassica napus HOM05D006330 ORTHO05D008013 3.6e-93 345.9 248 69.8
BraA03t13548Z Brassica rapa HOM05D006330 ORTHO05D008013 3.6e-93 345.9 244 70.1
Peaxi162Scf00841g00112 Petunia axillaris HOM05D006330 ORTHO05D008013 2.2e-90 336.7 345 56.2
AUR62028646 Chenopodium quinoa HOM05D006330 ORTHO05D008013 2.9e-90 336.3 215 77.7
Lj3g0006219 Lotus japonicus HOM05D006330 ORTHO05D008013 4.9e-90 335.5 263 66.9
CSS0004044 Camellia sinensis var. sinensis HOM05D006330 ORTHO05D008013 8.3e-90 334.7 243 69.5
CBR_g60689 Chara braunii HOM05D006330 ORTHO05D008013 2.4e-89 333.2 240 68.8
Dinv28793 Davidia involucrata HOM05D006330 ORTHO05D008013 2.4e-89 333.2 314 58.0
Oeu049580.1 Olea europaea HOM05D006330 ORTHO05D008013 3.5e-88 329.3 208 79.3
Nitab4.5_0000038g0340 Nicotiana tabacum HOM05D006330 ORTHO05D008013 1.0e-87 327.8 288 64.2
Nitab4.5_0010469g0010 Nicotiana tabacum HOM05D006330 ORTHO05D008013 5.0e-87 325.5 253 68.8
Solyc09g047870.4 Solanum lycopersicum HOM05D006330 ORTHO05D008013 1.5e-86 323.9 187 87.2
BcaC01g03225 Brassica carinata HOM05D006330 ORTHO05D008013 1.8e-84 317.0 244 66.0
SMO141G0006 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 2.2e-82 310.1 252 62.3
SMO186G0001 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 7.8e-80 301.6 243 62.1
Cpa.g.sc8.41 Carica papaya HOM05D006330 ORTHO05D008013 6.6e-79 298.5 214 72.9
PSO732G0743 Papaver somniferum HOM05D006330 ORTHO05D008013 2.5e-78 296.6 178 83.1
HanXRQChr07g0198371 Helianthus annuus HOM05D006330 ORTHO05D008013 3.6e-77 292.7 177 82.5
BcaB06g26747 Brassica carinata HOM05D006330 ORTHO05D008013 1.3e-74 284.3 248 59.7
FAN27G2337 Fragaria x ananassa HOM05D006330 ORTHO05D008013 3.1e-68 263.1 185 75.1
MCO07G099 Micromonas commoda HOM05D006330 ORTHO05D008013 4.4e-67 259.2 240 57.1
Cre10.g428900 Chlamydomonas reinhardtii HOM05D006330 ORTHO05D008013 1.7e-63 247.3 244 57.4
CAN.G253.5 Capsicum annuum HOM05D006330 ORTHO05D008013 2.1e-56 223.8 130 88.5
PRCOL_00000451 Prasinoderma coloniale HOM05D006330 ORTHO05D008013 5.6e-54 215.7 312 44.2
SEGI_37995 Sequoiadendron giganteum HOM05D006330 ORTHO05D008013 1.9e-46 190.7 116 78.4
arahy.Tifrunner.gnm1.ann1.VBTZ6V Arachis hypogaea HOM05D006330 ORTHO05D008013 8.7e-39 165.2 112 72.3
AagrBONN_evm.TU.Sc2ySwM_368.2380 Anthoceros agrestis HOM05D006330 ORTHO05D008013 3.7e-37 159.8 115 65.2
PSO675G8411 Papaver somniferum HOM05D006330 ORTHO05D008013 6.2e-37 159.1 96 77.1
Hma1.2p1_0161F.1_g071660 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 7.6e-35 152.1 89 80.9
Cfa009322 Carpinus fangiana HOM05D006614 ORTHO05D008217 1.9e-30 137.5 85 77.6
CDE04G0367 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 4.2e-25 119.8 89 62.9
VMungo1383G2211 Vigna mungo HOM05D006330 ORTHO05D434633 1.0e-10 72.0 44 77.3
BcaB06g26875 Brassica carinata HOM05D006330 ORTHO05D008013 1.7e-10 71.2 64 60.9
RcHm_v2.0_Chr5g0065021 Rosa chinensis HOM05D006330 ORTHO05D008013 4.2e-09 66.6 46 65.2


User provided reference genes

Program Settings