Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004280 Daucus carota HOM05D000227 ORTHO05D001491 2.8e-28 127.9 62 100.0
Potri.003G095700 Populus trichocarpa HOM05D000227 ORTHO05D001491 5.2e-19 97.1 66 75.8
MSTRG.13741 Avicennia marina HOM05D000227 ORTHO05D001491 6.8e-19 96.7 64 78.1
Cpa.g.sc90.10 Carica papaya HOM05D000227 ORTHO05D001491 6.8e-19 96.7 64 78.1
Potri.001G138000 Populus trichocarpa HOM05D000227 ORTHO05D001491 1.2e-18 95.9 66 74.2
Ciclev10002732m.g Citrus clementina HOM05D000227 ORTHO05D001491 1.5e-18 95.5 64 76.6
Cc08_g03390 Coffea canephora HOM05D000227 ORTHO05D001491 1.5e-18 95.5 64 76.6
Hma1.2p1_0870F.1_g230840 Hydrangea macrophylla HOM05D000227 ORTHO05D001491 1.5e-18 95.5 64 76.6
Sed0012807 Sechium edule HOM05D000227 ORTHO05D001491 1.5e-18 95.5 64 76.6
TWI60G1500 Tripterygium wilfordii HOM05D000227 ORTHO05D001491 2.0e-18 95.1 64 76.6
Atru.chr6.1614 Acer truncatum HOM05D000227 ORTHO05D001491 3.4e-18 94.4 64 75.0
Lj8P307T28 Lonicera japonica HOM05D000227 ORTHO05D001491 3.4e-18 94.4 64 75.0
Lalb_Chr09g0334131 Lupinus albus HOM05D000227 ORTHO05D001491 3.4e-18 94.4 64 75.0
Nitab4.5_0000529g0080 Nicotiana tabacum HOM05D000227 ORTHO05D001491 3.4e-18 94.4 64 75.0
TWI15G1153 Tripterygium wilfordii HOM05D000227 ORTHO05D001491 4.4e-18 94.0 64 75.0
CiPaw.12G067400 Carya illinoinensis HOM05D000227 ORTHO05D001491 9.8e-18 92.8 64 73.4
Duzib205G1182 Durio zibethinus HOM05D000227 ORTHO05D001491 9.8e-18 92.8 64 73.4
Lalb_Chr05g0225781 Lupinus albus HOM05D000227 ORTHO05D001491 9.8e-18 92.8 64 73.4
PSO384G2873 Papaver somniferum HOM05D000227 ORTHO05D001491 9.8e-18 92.8 64 73.4
TAR636G3615 Trochodendron aralioides HOM05D000227 ORTHO05D001491 1.3e-17 92.4 66 71.2
Eucgr.D02220 Eucalyptus grandis HOM05D000227 ORTHO05D001491 1.7e-17 92.0 64 73.4
GSVIVG01013071001 Vitis vinifera HOM05D000227 ORTHO05D001491 1.7e-17 92.0 64 71.9
Duzib068G1096 Durio zibethinus HOM05D000227 ORTHO05D001491 2.2e-17 91.7 64 73.4
Sopen08g025070 Solanum pennellii HOM05D000227 ORTHO05D001491 2.2e-17 91.7 64 71.9
PGSC0003DMG400014797 Solanum tuberosum HOM05D000227 ORTHO05D001491 2.2e-17 91.7 64 71.9
TAR629G3503 Trochodendron aralioides HOM05D000227 ORTHO05D001491 2.2e-17 91.7 64 71.9
PSO339G6712 Papaver somniferum HOM05D000227 ORTHO05D001491 2.9e-17 91.3 64 71.9
Cfa016041 Carpinus fangiana HOM05D000227 ORTHO05D001491 3.7e-17 90.9 64 73.4
Haze_00415 Corylus avellana HOM05D000227 ORTHO05D001491 3.7e-17 90.9 64 73.4
HanXRQChr17g0538101 Helianthus annuus HOM05D000227 ORTHO05D001491 3.7e-17 90.9 62 75.8
Actinidia03348 Actinidia chinensis HOM05D000227 ORTHO05D001491 4.9e-17 90.5 64 71.9
Cfa012508 Carpinus fangiana HOM05D000227 ORTHO05D001491 8.3e-17 89.7 64 70.3
Haze_08161 Corylus avellana HOM05D000227 ORTHO05D001491 8.3e-17 89.7 64 70.3
Lsat_1_v5_gn_3_19641 Lactuca sativa HOM05D002234 ORTHO05D001491 8.3e-17 89.7 62 74.2
ATR0829G175 Amborella trichopoda HOM05D000227 ORTHO05D001491 1.1e-16 89.4 64 68.8
Nitab4.5_0001595g0010 Nicotiana tabacum HOM05D000227 ORTHO05D001491 1.1e-16 89.4 64 70.3
Cfa012500 Carpinus fangiana HOM05D000227 ORTHO05D001491 1.4e-16 89.0 64 70.3
Haze_08170 Corylus avellana HOM05D000227 ORTHO05D001491 1.4e-16 89.0 64 70.3
Nn8g39980 Nelumbo nucifera HOM05D000227 ORTHO05D001491 1.4e-16 89.0 64 68.8
Manes.09G125300 Manihot esculenta HOM05D000227 ORTHO05D001491 2.4e-16 88.2 64 70.3
Actinidia25748 Actinidia chinensis HOM05D000227 ORTHO05D001491 3.2e-16 87.8 60 75.0
ECA246G3425 Erigeron canadensis HOM05D000227 ORTHO05D001491 3.2e-16 87.8 62 72.6
Nn1g00188 Nelumbo nucifera HOM05D000227 ORTHO05D001491 3.2e-16 87.8 64 68.8
QL12p001321 Quercus lobata HOM05D000227 ORTHO05D001491 3.2e-16 87.8 64 68.8
Os01g0505600 Oryza sativa ssp. japonica HOM05D000227 ORTHO05D001491 9.2e-16 86.3 62 71.0
Aa31LG2G13750 Aethionema arabicum HOM05D000227 ORTHO05D001491 1.2e-15 85.9 64 67.2
Zm00001eb224870 Zea mays HOM05D000227 ORTHO05D001491 2.0e-15 85.1 62 69.4
Thhalv10009363m.g Eutrema salsugineum HOM05D000227 ORTHO05D001491 3.5e-15 84.3 64 65.6
Gohir.A08G154200 Gossypium hirsutum HOM05D000227 ORTHO05D001491 3.5e-15 84.3 62 71.0
Sp1g27930 Schrenkiella parvula HOM05D000227 ORTHO05D001491 3.5e-15 84.3 64 65.6
BcaB03g13746 Brassica carinata HOM05D000227 ORTHO05D001491 6.0e-15 83.6 64 65.6
BcaC05g27882 Brassica carinata HOM05D000227 ORTHO05D001491 6.0e-15 83.6 64 65.6
A05p25050 Brassica napus HOM05D000227 ORTHO05D001491 6.0e-15 83.6 64 65.6
C05p38900 Brassica napus HOM05D000227 ORTHO05D001491 6.0e-15 83.6 64 65.6
BolC5t32632H Brassica oleracea HOM05D000227 ORTHO05D001491 6.0e-15 83.6 64 65.6
BraA05t21387Z Brassica rapa HOM05D000227 ORTHO05D001491 6.0e-15 83.6 64 65.6
AT1G32250 Arabidopsis thaliana HOM05D000227 ORTHO05D001491 7.8e-15 83.2 64 64.1
Carub.0001s3058 Capsella rubella HOM05D000227 ORTHO05D001491 7.8e-15 83.2 64 64.1
CARHR031620 Cardamine hirsuta HOM05D000227 ORTHO05D001491 7.8e-15 83.2 64 64.1
AL1G46400 Arabidopsis lyrata HOM05D000227 ORTHO05D001491 1.3e-14 82.4 64 62.5
CANSAT56G2817 Cannabis sativa HOM05D000227 ORTHO05D001491 1.7e-14 82.0 64 62.5
FvH4_7g34050 Fragaria vesca HOM05D000227 ORTHO05D001491 1.7e-14 82.0 64 65.6
FAN03G3211 Fragaria x ananassa HOM05D000227 ORTHO05D001491 1.7e-14 82.0 64 65.6
Gohir.1Z049405 Gossypium hirsutum HOM05D000227 ORTHO05D001491 1.7e-14 82.0 60 71.7
SEGI_12280 Sequoiadendron giganteum HOM05D000227 ORTHO05D001491 3.0e-14 81.3 62 67.7
RcHm_v2.0_Chr1g0384321 Rosa chinensis HOM05D000227 ORTHO05D001491 5.0e-14 80.5 64 64.1
CANSAT21G2101 Cannabis sativa HOM05D000227 ORTHO05D001491 6.6e-14 80.1 57 73.7
HPP92_022067 Vanilla planifolia HOM05D000227 ORTHO05D001491 6.6e-14 80.1 64 64.1
FAN01G1331 Fragaria x ananassa HOM05D000227 ORTHO05D001491 1.1e-13 79.3 64 62.5
Dinv28992 Davidia involucrata HOM05D000227 ORTHO05D001491 1.9e-13 78.6 64 65.6
MD16G1280800 Malus domestica HOM05D000227 ORTHO05D001491 2.5e-13 78.2 64 64.1
Migut.E00757 Erythranthe guttata HOM05D000227 ORTHO05D001491 4.3e-13 77.4 64 65.6
PGR044G1455 Punica granatum HOM05D000227 ORTHO05D001491 5.6e-13 77.0 57 70.2
DCAR_026198 Daucus carota HOM05D000227 ORTHO05D001491 2.1e-12 75.1 64 59.4
AT3G03000 Arabidopsis thaliana HOM05D000227 ORTHO05D001491 3.6e-12 74.3 64 62.5
MELO3C013829.2 Cucumis melo HOM05D000227 ORTHO05D001491 8.1e-12 73.2 64 62.5
CsaV3_3G001430 Cucumis sativus L. HOM05D000227 ORTHO05D001491 8.1e-12 73.2 64 62.5
TPR.G3356 Trifolium pratense HOM05D000227 ORTHO05D001491 8.1e-12 73.2 64 60.9
Rhsim11G0020000 Rhododendron simsii HOM05D000227 ORTHO05D001491 1.4e-11 72.4 65 60.0
AUR62002072 Chenopodium quinoa HOM05D000227 ORTHO05D001491 1.8e-11 72.0 46 73.9
AUR62028185 Chenopodium quinoa HOM05D000227 ORTHO05D001491 1.8e-11 72.0 46 73.9
CDE06G1887 Ceratophyllum demersum HOM05D000227 ORTHO05D001491 2.3e-11 71.6 48 75.0
ClCG10G001360 Citrullus lanatus HOM05D000227 ORTHO05D001491 3.1e-11 71.2 64 60.9
Eucgr.A02973 Eucalyptus grandis HOM05D000227 ORTHO05D001491 3.1e-11 71.2 55 69.1
BNapus_Darmor_BZH_scaffold_129p00090 Brassica napus HOM05D000227 ORTHO05D001491 4.0e-11 70.9 64 60.9
BraA01t04600Z Brassica rapa HOM05D000227 ORTHO05D001491 4.0e-11 70.9 64 60.9
BcaNung03555 Brassica carinata HOM05D000227 ORTHO05D001491 8.9e-11 69.7 64 59.4
BolC1t05855H Brassica oleracea HOM05D000227 ORTHO05D001491 8.9e-11 69.7 64 59.4
Oeu004276.1 Olea europaea HOM05D000227 ORTHO05D001491 1.2e-10 69.3 45 75.6
Sc13g0010910 Simmondsia chinensis HOM05D000227 ORTHO05D001491 2.0e-10 68.6 50 70.0
FAN03G2571 Fragaria x ananassa HOM05D000106 ORTHO05D002214 3.4e-10 67.8 51 66.7
Oeu022246.1 Olea europaea HOM05D000227 ORTHO05D001491 3.4e-10 67.8 45 73.3
MSTRG.2002 Avicennia marina HOM05D000227 ORTHO05D001491 7.5e-10 66.6 64 59.4
FAN10G2121 Fragaria x ananassa HOM05D000106 ORTHO05D002214 7.5e-10 66.6 61 55.7
Lj2P233T22 Lonicera japonica HOM05D000227 ORTHO05D001491 9.8e-10 66.2 64 56.2
Gohir.D03G175600 Gossypium hirsutum HOM05D000227 ORTHO05D001491 1.3e-09 65.9 64 56.2
MD01G1013200 Malus domestica HOM05D000227 ORTHO05D001491 1.3e-09 65.9 62 58.1
Nn8g38611 Nelumbo nucifera HOM05D000227 ORTHO05D001491 2.2e-09 65.1 52 65.4
Sabra01G0106800 Salix brachista HOM05D000227 ORTHO05D001491 2.9e-09 64.7 62 58.1
COL.COLO4_16957 Corchorus olitorius HOM05D000227 ORTHO05D001491 3.7e-09 64.3 64 54.7
Thecc.03G308700 Theobroma cacao HOM05D000227 ORTHO05D001491 3.7e-09 64.3 64 54.7
Gohir.A03G000039 Gossypium hirsutum HOM05D000227 ORTHO05D001491 6.4e-09 63.5 64 54.7
Gorai.003G184700 Gossypium raimondii HOM05D000227 ORTHO05D001491 6.4e-09 63.5 64 54.7
SGA_v2.0_scaffold54G19443 Striga asiatica HOM05D000227 ORTHO05D001491 6.4e-09 63.5 64 56.2
Peaxi162Scf00170g00820 Petunia axillaris HOM05D000227 ORTHO05D001491 1.4e-08 62.4 46 67.4
Gohir.D08G175025 Gossypium hirsutum HOM05D000227 ORTHO05D001491 2.4e-08 61.6 62 56.5
Gorai.004G182700 Gossypium raimondii HOM05D000227 ORTHO05D001491 2.4e-08 61.6 62 56.5
SHI07357 Sapria himalayana HOM05D000227 ORTHO05D001491 2.4e-08 61.6 61 55.7
Eucgr.G02382 Eucalyptus grandis HOM05D000227 ORTHO05D001491 3.2e-08 61.2 61 50.8
CiPaw.06G098300 Carya illinoinensis HOM05D000227 ORTHO05D001491 5.4e-08 60.5 60 53.3
Sabra03G0064600 Salix brachista HOM05D000227 ORTHO05D001491 7.1e-08 60.1 66 53.0
CARHR077020 Cardamine hirsuta HOM05D000227 ORTHO05D001491 9.2e-08 59.7 64 53.1
FAN07G2148 Fragaria x ananassa HOM05D000085 ORTHO05D000274 9.2e-08 59.7 58 53.4
Lj1g0025352 Lotus japonicus HOM05D000227 ORTHO05D001491 9.2e-08 59.7 62 50.0
MD13G1050700 Malus domestica HOM05D000227 ORTHO05D001491 9.2e-08 59.7 60 51.7
Phvul.009G201700 Phaseolus vulgaris HOM05D000227 ORTHO05D001491 9.2e-08 59.7 60 55.0
VMungo1309G2711 Vigna mungo HOM05D000227 ORTHO05D001491 9.2e-08 59.7 60 55.0
Nn6g34846 Nelumbo nucifera HOM05D000227 ORTHO05D001491 1.2e-07 59.3 52 61.5
TWI79G0153 Tripterygium wilfordii HOM05D000227 ORTHO05D001491 1.2e-07 59.3 60 53.3
CiPaw.11G097600 Carya illinoinensis HOM05D000227 ORTHO05D001491 2.1e-07 58.5 64 51.6
Rhsim09G0115200 Rhododendron simsii HOM05D000227 ORTHO05D001491 2.1e-07 58.5 60 50.0
Aqoxy4G02542 Aquilegia oxysepala HOM05D000227 ORTHO05D001491 2.7e-07 58.2 64 51.6
MSTRG.13490 Avicennia marina HOM05D000227 ORTHO05D001491 2.7e-07 58.2 60 48.3
CSS0004986 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D001491 2.7e-07 58.2 64 53.1
DCAR_023706 Daucus carota HOM05D000085 ORTHO05D000274 2.7e-07 58.2 60 51.7
Duzib068G0040 Durio zibethinus HOM05D000227 ORTHO05D001491 2.7e-07 58.2 59 52.5
Migut.E00277 Erythranthe guttata HOM05D000227 ORTHO05D001491 2.7e-07 58.2 60 51.7
FvH4_4g28451 Fragaria vesca HOM05D000227 ORTHO05D001491 2.7e-07 58.2 58 51.7
FAN22G2286 Fragaria x ananassa HOM05D000227 ORTHO05D001491 2.7e-07 58.2 58 51.7
Manes.05G117100 Manihot esculenta HOM05D000227 ORTHO05D001491 2.7e-07 58.2 61 49.2
Prupe.1G301400 Prunus persica HOM05D000227 ORTHO05D001491 2.7e-07 58.2 60 50.0
RcHm_v2.0_Chr4g0436421 Rosa chinensis HOM05D000227 ORTHO05D001491 2.7e-07 58.2 58 51.7
arahy.Tifrunner.gnm1.ann1.84KAU9 Arachis hypogaea HOM05D000227 ORTHO05D001491 3.5e-07 57.8 64 51.6
Gohir.A07G057000 Gossypium hirsutum HOM05D000227 ORTHO05D001491 3.5e-07 57.8 61 50.8
Gohir.D07G061300 Gossypium hirsutum HOM05D000227 ORTHO05D001491 3.5e-07 57.8 61 50.8
Gorai.001G065000 Gossypium raimondii HOM05D000227 ORTHO05D001491 3.5e-07 57.8 61 50.8
Peaxi162Scf00208g00173 Petunia axillaris HOM05D000227 ORTHO05D001491 3.5e-07 57.8 60 48.3
MSTRG.2277 Avicennia marina HOM05D000227 ORTHO05D001491 4.6e-07 57.4 62 45.2
Gorai.008G188600 Gossypium raimondii HOM05D000227 ORTHO05D001491 4.6e-07 57.4 61 45.9
MD16G1051200 Malus domestica HOM05D000227 ORTHO05D001491 4.6e-07 57.4 60 50.0
Psat4g113160 Pisum sativum HOM05D000227 ORTHO05D001491 4.6e-07 57.4 60 50.0
THA.LOC104814420 Tarenaya hassleriana HOM05D000227 ORTHO05D001491 4.6e-07 57.4 62 50.0
CAN.G10.14 Capsicum annuum HOM05D000227 ORTHO05D001491 6.0e-07 57.0 60 50.0
CAN.G726.27 Capsicum annuum HOM05D000227 ORTHO05D001491 6.0e-07 57.0 64 50.0
Gohir.D12G176200 Gossypium hirsutum HOM05D000227 ORTHO05D001491 6.0e-07 57.0 61 45.9
Solyc04g006930.3 Solanum lycopersicum HOM05D000085 ORTHO05D000274 6.0e-07 57.0 60 50.0
Sopen04g001990 Solanum pennellii HOM05D000227 ORTHO05D001491 6.0e-07 57.0 60 50.0
Lj4g0014677 Lotus japonicus HOM05D000227 ORTHO05D001491 1.0e-06 56.2 60 51.7
Medtr8g069915 Medicago truncatula HOM05D000227 ORTHO05D001491 1.0e-06 56.2 60 48.3
CANSAT64G0216 Cannabis sativa HOM05D000227 ORTHO05D001491 1.3e-06 55.8 60 48.3
AUR62007765 Chenopodium quinoa HOM05D000227 ORTHO05D001491 1.3e-06 55.8 61 49.2
Migut.N00221 Erythranthe guttata HOM05D000227 ORTHO05D000451 1.3e-06 55.8 56 53.6
FAN17G1226 Fragaria x ananassa HOM05D000085 ORTHO05D000274 1.3e-06 55.8 58 50.0
AT2G41100 Arabidopsis thaliana HOM05D000227 ORTHO05D000451 1.7e-06 55.5 61 47.5
QL09p023488 Quercus lobata HOM05D000227 ORTHO05D001491 1.7e-06 55.5 62 51.6
Ca_22514_v3 Cicer arietinum L. HOM05D000227 ORTHO05D001491 2.3e-06 55.1 64 43.8
Hma1.2p1_0572F.1_g181240 Hydrangea macrophylla HOM05D000227 ORTHO05D001491 2.3e-06 55.1 64 50.0
PGR031G2010 Punica granatum HOM05D000227 ORTHO05D001491 2.3e-06 55.1 64 50.0
unitig_52.g17151 Utricularia gibba HOM05D000227 ORTHO05D001491 2.3e-06 55.1 51 52.9
COL.COLO4_11245 Corchorus olitorius HOM05D000227 ORTHO05D001491 3.0e-06 54.7 60 48.3
TAR629G0854 Trochodendron aralioides HOM05D000227 ORTHO05D001491 3.0e-06 54.7 51 52.9
ClCG06G015160 Citrullus lanatus HOM05D000227 ORTHO05D001491 3.9e-06 54.3 51 54.9
Glyma.04G144800 Glycine max HOM05D000227 ORTHO05D001491 3.9e-06 54.3 51 56.9
GSVIVG01008204001 Vitis vinifera HOM05D000227 ORTHO05D001491 3.9e-06 54.3 60 50.0
Lsat_1_v5_gn_5_24140 Lactuca sativa HOM05D000227 ORTHO05D001491 5.1e-06 53.9 64 45.3
Solyc01g010020.3 Solanum lycopersicum HOM05D000227 ORTHO05D001491 5.1e-06 53.9 60 48.3
Sopen01g005580 Solanum pennellii HOM05D000227 ORTHO05D001491 5.1e-06 53.9 60 48.3
Cfa008791 Carpinus fangiana HOM05D000227 ORTHO05D001491 6.6e-06 53.5 60 48.3
Glyma.06G208800 Glycine max HOM05D000227 ORTHO05D001491 6.6e-06 53.5 50 58.0
Lsat_1_v5_gn_3_60220 Lactuca sativa HOM05D000227 ORTHO05D001491 6.6e-06 53.5 64 42.2
Nitab4.5_0001965g0080 Nicotiana tabacum HOM05D000227 ORTHO05D001491 6.6e-06 53.5 60 48.3
Nitab4.5_0004878g0060 Nicotiana tabacum HOM05D000227 ORTHO05D001491 6.6e-06 53.5 60 48.3
Peaxi162Scf00026g00014 Petunia axillaris HOM05D000085 ORTHO05D000274 6.6e-06 53.5 60 48.3
Sc11g0002940 Simmondsia chinensis HOM05D000227 ORTHO05D001491 6.6e-06 53.5 60 48.3
PGSC0003DMG400016011 Solanum tuberosum HOM05D000227 ORTHO05D001491 6.6e-06 53.5 60 48.3
AL4G39070 Arabidopsis lyrata HOM05D000227 ORTHO05D000451 8.6e-06 53.1 51 52.9
Carub.0003s0215 Capsella rubella HOM05D000227 ORTHO05D001491 8.6e-06 53.1 64 48.4


User provided reference genes

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