Gene: AT2G41100
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT2G41100
- Transcript Identifier AT2G41100.3
- Gene Type Coding gene
- Location Chr2 : 17138336-17139406 : positive
Gene Family Information
- ID HOM05D000227
- #Genes/#Species 1818/100
- Phylogenetic origin
- ID ORTHO05D000451
- #Genes/#Species 916/100
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT2G41100.3
- symbol TCH3
- Alias ATCAL4,ARABIDOPSIS THALIANA CALMODULIN LIKE 4,CML12,calmodulin-like 12
- full_name TOUCH 3
- uniprot P25071
Descriptions
- Description Calcium-binding EF hand family protein
- Computational description TOUCH 3 (TCH3); FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to mechanical stimulus, response to temperature stimulus, thigmotropism, response to absence of light; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 5 (TAIR:AT2G27030.3); Has 47548 Blast hits to 19426 proteins in 1680 species: Archae - 4; Bacteria - 353; Metazoa - 18604; Fungi - 12275; Plants - 9433; Viruses - 2; Other Eukaryotes - 6877 (source: NCBI BLink).
- Computational description TOUCH 3 (TCH3); FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to mechanical stimulus, response to temperature stimulus, thigmotropism, response to absence of light; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 5 (TAIR:AT2G27030.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009652 | IEP | Gene Ontology | thigmotropism | 1 |
| GO:0009646 | IEP | Gene Ontology | response to absence of light | 2 |
| GO:0009612 | IEP | Gene Ontology | response to mechanical stimulus | 2 |
| GO:0071456 | HEP | Gene Ontology | cellular response to hypoxia | 3 |
| GO:0009266 | NAS | Gene Ontology | response to temperature stimulus |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003729 | IDA | Gene Ontology | mRNA binding | 4 |
| GO:0005509 | IDA IBA IEA | Gene Ontology | calcium ion binding | 2 5 |
| GO:0005509 | IEA | InterPro | calcium ion binding | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0005515 | IPI | Gene Ontology | protein binding | 6 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009506 | IDA | GOA Database | plasmodesma | |
| GO:0009506 | HDA | Gene Ontology | plasmodesma | 7 |
| GO:0005774 | IDA | GOA Database | vacuolar membrane | |
| GO:0005829 | HDA | Gene Ontology | cytosol | 8 |
| GO:0000325 | HDA | Gene Ontology | plant-type vacuole | 9 |
| GO:0009507 | ISM | Gene Ontology | chloroplast | |
| GO:0005739 | ISM | Gene Ontology | mitochondrion |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 27.7.2 | Multi-process regulation.calcium-dependent signalling.calcium sensor (CML) |