Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1988.8 1022 100.0
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1988.8 1022 100.0
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1587.4 1022 80.1
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1531.9 1028 76.9
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1518.4 1014 78.2
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1466.8 1038 73.7
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1465.3 1036 73.9
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1460.3 1036 73.5
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1455.3 1025 73.8
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1453.0 1024 74.3
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1453.0 1030 73.3
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1448.0 1036 72.8
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1446.8 1032 71.4
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1442.6 1020 73.9
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1440.2 1011 74.2
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1439.9 1036 72.3
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1436.0 1032 73.4
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1436.0 1041 72.3
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1434.9 1036 72.5
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1432.2 1014 73.4
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1430.6 1041 72.1
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1429.5 1035 72.4
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1426.0 1023 71.7
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1424.8 1037 70.8
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1423.7 1037 70.9
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1423.7 1019 72.6
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1422.1 1047 72.0
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1419.4 1027 71.5
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1419.4 1017 73.1
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1417.5 1022 73.1
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1417.1 1024 72.6
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1416.7 1035 71.7
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1416.4 1032 70.4
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1415.6 1027 71.9
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1415.2 1033 72.4
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1411.0 1036 71.6
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1410.6 1021 71.5
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1409.8 1032 72.2
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1406.3 1033 72.0
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1406.0 1021 71.2
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1405.6 1059 70.5
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1404.4 1037 71.1
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1404.0 1032 71.6
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1404.0 1020 72.5
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1403.7 1024 71.2
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1403.7 1039 71.8
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1402.1 1033 71.9
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1396.7 1031 70.9
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1395.6 1036 71.0
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1394.0 1032 71.1
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1393.6 1030 72.1
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1393.3 1051 69.6
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1390.9 1054 69.9
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1389.0 1036 70.7
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1387.5 1027 70.5
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1385.5 1034 70.9
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1383.6 1033 71.1
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1383.6 1012 71.4
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1383.6 1036 70.5
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1383.2 1014 70.9
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1381.7 1037 69.6
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1381.3 1031 71.5
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1378.2 1011 70.3
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1375.1 1013 70.1
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1374.4 1027 70.1
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1373.6 1025 70.0
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1370.9 1029 70.1
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1367.4 1036 69.5
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1365.5 1010 70.4
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1362.8 1035 70.0
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1359.0 1063 68.3
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1358.6 985 71.6
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1358.6 1027 69.9
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1356.7 1012 69.8
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1356.3 1024 70.6
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1354.0 1071 67.4
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1349.7 1034 68.7
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1347.4 1030 68.3
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1342.8 1015 69.3
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1339.7 1028 68.9
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1338.6 1052 68.8
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1337.8 1011 68.4
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1337.4 1023 68.7
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1333.5 1043 68.6
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1327.4 943 73.0
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1323.9 997 70.7
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1322.8 1015 69.0
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1320.4 1032 67.7
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1320.1 1035 67.5
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1316.2 1031 68.2
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1315.4 1042 67.8
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1314.3 1039 66.9
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1312.7 1042 67.5
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1312.4 1020 68.4
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1310.8 1014 68.0
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1310.4 1017 68.1
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1308.5 1016 67.5
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1307.0 1015 68.2
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1305.8 1012 67.7
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1305.4 1012 68.0
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1305.4 898 75.5
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1298.5 1024 66.8
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1298.1 1024 66.9
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1297.7 1025 67.1
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1297.3 900 75.6
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1286.2 1015 67.3
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1285.4 1037 66.4
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1275.0 916 73.0
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1268.8 1026 66.3
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1264.2 993 67.6
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1249.6 1051 64.6
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1247.6 1028 65.1
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1243.4 1015 65.6
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1242.3 1028 64.9
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1241.9 1032 64.4
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1231.5 1025 65.0
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1222.2 1044 63.3
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1192.2 1042 63.6
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1186.4 1042 62.7
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1184.5 1028 61.5
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1175.2 937 66.8
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1175.2 1023 62.9
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1147.5 1037 62.0
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1137.1 1018 61.8
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 0.0e+00 1132.1 1060 59.5
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1130.2 1000 60.8
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1100.5 1036 58.3
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1096.3 857 66.5
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 3.8e-292 1008.4 1036 57.5
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 3.0e-289 998.8 1003 55.7
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 2.5e-283 979.2 896 58.9
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 1.1e-267 927.2 839 60.8
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 2.1e-266 922.9 994 52.7
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.4e-265 920.2 810 64.6
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 3.1e-262 909.1 728 69.0
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 8.9e-249 864.4 1048 48.3
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 2.0e-248 863.2 752 64.2
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 9.8e-248 860.9 984 49.9
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.1e-243 847.4 986 49.4
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 1.2e-234 817.4 984 48.4
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 3.4e-232 809.3 834 52.6
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 7.6e-224 781.6 820 53.2
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 3.0e-204 716.5 724 59.4
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 5.8e-200 702.2 918 45.8
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 3.9e-196 689.5 638 59.7
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.8e-185 654.1 839 49.0
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 5.3e-169 599.4 986 39.1
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 2.2e-167 594.0 642 53.7
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 2.4e-153 547.4 678 49.6
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 2.0e-152 544.3 636 50.6
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 9.8e-147 525.4 1171 33.5
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.6e-141 508.1 611 49.9
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 4.9e-130 469.9 376 62.2
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 3.3e-118 430.6 653 43.8
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 3.2e-113 414.1 277 75.8
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 7.1e-105 386.3 545 44.8
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 5.3e-100 370.2 236 78.8
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 4.2e-89 334.0 268 66.8
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 2.2e-82 311.6 309 55.0
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 3.4e-75 287.7 1078 28.8
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 3.0e-63 248.1 254 55.5
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 6.5e-58 230.3 1069 26.2
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 5.7e-54 217.2 213 52.1
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 4.2e-49 201.1 916 23.9
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 1.5e-46 192.6 159 62.3
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.0e-46 192.2 222 45.5
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 6.3e-45 187.2 154 63.0
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.1e-44 186.4 163 54.6
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 3.7e-37 161.4 148 54.1
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 5.5e-33 147.5 173 50.9
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 5.2e-31 141.0 131 55.7
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 1.2e-24 119.8 115 54.8
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 8.9e-23 113.6 112 50.0
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 9.8e-22 110.2 88 56.8
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 2.3e-15 89.0 59 79.7
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 1.5e-14 86.3 63 73.0
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 2.0e-11 75.9 67 55.2
Actinidia09594 Actinidia chinensis HOM05D003977 ORTHO05D004536 2.0e-06 59.3 46 65.2


User provided reference genes

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