Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 1.8e-119 432.6 219 100.0
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 4.0e-90 335.1 217 74.7
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.7e-88 329.7 221 72.9
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 8.4e-88 327.4 217 72.4
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 2.4e-87 325.9 217 71.0
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 3.2e-87 325.5 223 72.2
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 7.1e-87 324.3 217 71.0
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 9.3e-87 323.9 218 70.2
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 1.6e-86 323.2 219 71.2
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.6e-86 323.2 221 71.5
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 2.7e-86 322.4 217 71.4
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 2.7e-86 322.4 216 73.6
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 4.6e-86 321.6 247 65.6
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 4.6e-86 321.6 218 72.9
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 6.0e-86 321.2 217 69.1
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 1.3e-85 320.1 224 71.9
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.7e-85 319.7 217 72.8
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.7e-85 319.7 217 72.8
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 2.3e-85 319.3 223 70.9
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 2.3e-85 319.3 217 72.4
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 5.1e-85 318.2 217 71.9
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 6.6e-85 317.8 206 74.8
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 6.6e-85 317.8 218 72.0
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 1.1e-84 317.0 219 71.7
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 1.5e-84 316.6 218 68.8
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 1.5e-84 316.6 218 68.8
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 1.9e-84 316.2 223 70.0
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 4.3e-84 315.1 218 70.6
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 5.6e-84 314.7 217 69.6
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 1.3e-83 313.5 218 71.6
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.6e-83 313.2 217 71.4
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 1.6e-83 313.2 217 69.6
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 1.6e-83 313.2 218 70.2
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 1.6e-83 313.2 223 70.4
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 2.8e-83 312.4 217 69.6
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 4.8e-83 311.6 218 70.2
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 6.2e-83 311.2 218 69.3
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 1.4e-82 310.1 217 69.1
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 3.1e-82 308.9 218 67.9
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 6.9e-82 307.8 217 70.0
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 9.0e-82 307.4 217 67.7
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 9.0e-82 307.4 217 68.7
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 1.2e-81 307.0 217 67.7
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 1.5e-81 306.6 216 67.1
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 2.6e-81 305.8 217 68.7
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 3.4e-81 305.4 218 69.3
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 5.8e-81 304.7 217 67.7
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 7.6e-81 304.3 218 68.3
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.7e-80 303.1 224 67.9
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 2.2e-80 302.8 220 65.9
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 2.9e-80 302.4 219 67.1
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 2.9e-80 302.4 220 67.7
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 3.8e-80 302.0 218 67.4
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 3.8e-80 302.0 217 68.2
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 6.4e-80 301.2 222 66.7
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 6.4e-80 301.2 216 66.2
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 1.1e-79 300.4 217 65.9
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 1.4e-79 300.1 261 58.6
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 1.9e-79 299.7 217 66.8
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 3.2e-79 298.9 220 65.5
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 4.2e-79 298.5 227 63.9
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 5.4e-79 298.1 220 64.5
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 5.4e-79 298.1 219 66.2
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 9.3e-79 297.4 217 67.7
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 9.3e-79 297.4 224 67.4
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 1.6e-78 296.6 217 65.4
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 1.6e-78 296.6 224 63.8
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 2.1e-78 296.2 218 65.6
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 2.1e-78 296.2 218 67.4
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 2.7e-78 295.8 220 64.1
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 2.7e-78 295.8 227 65.2
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 3.5e-78 295.4 223 62.3
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 3.5e-78 295.4 223 62.3
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 3.5e-78 295.4 227 63.9
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 6.0e-78 294.7 220 63.2
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 6.0e-78 294.7 211 70.1
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 7.9e-78 294.3 216 65.7
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 7.9e-78 294.3 220 64.5
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 1.0e-77 293.9 225 64.0
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 1.7e-77 293.1 217 65.4
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 1.7e-77 293.1 221 64.3
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 2.3e-77 292.7 221 65.2
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 3.0e-77 292.4 220 63.2
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 3.0e-77 292.4 220 63.2
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 3.9e-77 292.0 218 64.7
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 3.9e-77 292.0 215 66.0
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 5.1e-77 291.6 221 64.7
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 6.6e-77 291.2 218 64.2
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 8.7e-77 290.8 217 66.4
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 1.9e-76 289.7 218 64.2
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 2.5e-76 289.3 217 64.5
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 3.3e-76 288.9 216 63.9
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 4.3e-76 288.5 235 60.4
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 5.6e-76 288.1 230 62.2
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 1.3e-75 287.0 220 61.4
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 1.1e-74 283.9 225 63.6
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 2.4e-74 282.7 243 61.3
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 1.5e-73 280.0 220 61.8
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 5.8e-73 278.1 257 57.2
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 7.6e-73 277.7 252 58.3
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 9.9e-73 277.3 220 62.7
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 1.4e-71 273.5 218 64.7
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 1.2e-70 270.4 225 60.0
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 6.0e-70 268.1 211 64.0
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 1.3e-69 266.9 215 58.6
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 5.1e-69 265.0 221 58.8
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 1.3e-67 260.4 161 74.5
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 1.3e-67 260.4 213 60.6
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 2.4e-66 256.1 156 75.0
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 1.5e-65 253.4 202 58.4
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 4.5e-65 251.9 168 69.0
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 4.5e-65 251.9 220 59.5
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 1.2e-62 243.8 183 67.2
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 3.9e-61 238.8 219 56.6
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 8.2e-59 231.1 217 53.0
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 4.1e-58 228.8 238 50.4
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 4.1e-58 228.8 191 61.3
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 6.1e-54 214.9 131 73.3
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 6.3e-51 204.9 121 74.4
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 2.4e-50 203.0 220 51.4
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 5.9e-49 198.4 207 49.8
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 2.9e-48 196.1 238 46.6
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 1.6e-46 190.3 245 43.7
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 2.7e-46 189.5 115 75.7
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 4.2e-39 165.6 172 50.6
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 3.1e-34 149.4 100 67.0
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 3.2e-31 139.4 251 34.3
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 1.8e-29 133.7 179 43.6
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 3.3e-28 129.4 246 37.0
SHI24908 Sapria himalayana HOM05D005618 ORTHO05D007278 1.2e-12 77.8 85 51.8
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 1.7e-11 73.9 42 76.2
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 7.0e-10 68.6 145 34.5
Aqoxy7G01552 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 1.6e-09 67.4 36 77.8
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 3.8e-08 62.8 43 67.4
THA.LOC104814751 Tarenaya hassleriana HOM05D001916 ORTHO05D003272 5.0e-08 62.4 242 23.6
BcaC01g04633 Brassica carinata HOM05D001916 ORTHO05D003272 6.6e-08 62.0 205 25.4
SMO364G0864 Selaginella moellendorffii HOM05D005618 ORTHO05D374196 1.1e-07 61.2 213 26.8
LjContig00312_ERROPOS870357g0000946 Lotus japonicus HOM05D001916 ORTHO05D003272 1.9e-07 60.5 201 22.9
Phvul.002G160300 Phaseolus vulgaris HOM05D001916 ORTHO05D003272 2.5e-07 60.1 215 22.8
A03p29330 Brassica napus HOM05D001916 ORTHO05D003272 3.3e-07 59.7 206 24.8
C03p35430 Brassica napus HOM05D001916 ORTHO05D003272 3.3e-07 59.7 206 24.8
Medtr5g009930 Medicago truncatula HOM05D001916 ORTHO05D003272 3.3e-07 59.7 210 22.9
A09p27900 Brassica napus HOM05D001916 ORTHO05D003272 4.3e-07 59.3 198 25.3
BraA09t38359Z Brassica rapa HOM05D001916 ORTHO05D003272 4.3e-07 59.3 198 25.3
BolC3t15856H Brassica oleracea HOM05D001916 ORTHO05D003272 5.6e-07 58.9 204 24.0
BraA03t12130Z Brassica rapa HOM05D001916 ORTHO05D003272 5.6e-07 58.9 204 24.0
QL10p020720 Quercus lobata HOM05D005618 ORTHO05D337099 5.6e-07 58.9 37 75.7
A03p54520 Brassica napus HOM05D001916 ORTHO05D003272 1.2e-06 57.8 162 27.8
Ca_24534_v3 Cicer arietinum L. HOM05D001916 ORTHO05D003272 1.2e-06 57.8 200 24.0
Thhalv10028764m.g Eutrema salsugineum HOM05D001916 ORTHO05D003272 1.2e-06 57.8 198 24.2
Sp6g06190 Schrenkiella parvula HOM05D001916 ORTHO05D003272 1.2e-06 57.8 227 24.7
SGA_v2.0_scaffold10G05278 Striga asiatica HOM05D001916 ORTHO05D003272 1.2e-06 57.8 192 24.0
BcaC09g50975 Brassica carinata HOM05D001916 ORTHO05D003272 1.6e-06 57.4 230 23.9
Carub.0007s1759 Capsella rubella HOM05D001916 ORTHO05D003272 1.6e-06 57.4 162 27.8
QL10p031514 Quercus lobata HOM05D005618 ORTHO05D337805 1.6e-06 57.4 38 73.7
unitig_0.g2466 Utricularia gibba HOM05D001916 ORTHO05D003272 1.6e-06 57.4 187 24.6
VMungo1215G1038 Vigna mungo HOM05D001916 ORTHO05D003272 2.1e-06 57.0 215 22.3
Lj2A178T48 Lonicera japonica HOM05D001916 ORTHO05D003272 2.8e-06 56.6 166 25.3
BcaB01g01623 Brassica carinata HOM05D001916 ORTHO05D003272 3.6e-06 56.2 162 25.9
BcaB05g23846 Brassica carinata HOM05D001916 ORTHO05D003272 3.6e-06 56.2 206 24.3
A01p14860 Brassica napus HOM05D001916 ORTHO05D003272 4.7e-06 55.8 163 25.8
C01p18550 Brassica napus HOM05D001916 ORTHO05D003272 4.7e-06 55.8 163 25.8
BolC1t01780H Brassica oleracea HOM05D001916 ORTHO05D003272 4.7e-06 55.8 163 25.8
Carub.0006s3011 Capsella rubella HOM05D001916 ORTHO05D003272 4.7e-06 55.8 206 23.8
Haze_08751 Corylus avellana HOM05D001916 ORTHO05D003272 4.7e-06 55.8 163 25.2
BraA01t01428Z Brassica rapa HOM05D001916 ORTHO05D003272 6.1e-06 55.5 163 25.8
Eucgr.A02714 Eucalyptus grandis HOM05D001916 ORTHO05D003272 6.1e-06 55.5 90 32.2
MD10G1039900 Malus domestica HOM05D001916 ORTHO05D003272 6.1e-06 55.5 90 34.4
TPR.G6657 Trifolium pratense HOM05D001916 ORTHO05D003272 6.1e-06 55.5 162 24.1
Atru.chr9.2108 Acer truncatum HOM05D001916 ORTHO05D003272 8.0e-06 55.1 215 23.3
AT4G23570 Arabidopsis thaliana HOM05D001916 ORTHO05D003272 8.0e-06 55.1 225 22.7
Thhalv10025590m.g Eutrema salsugineum HOM05D001916 ORTHO05D003272 8.0e-06 55.1 201 23.4
Lalb_Chr09g0320811 Lupinus albus HOM05D001916 ORTHO05D003272 8.0e-06 55.1 162 24.1
THA.LOC104813028 Tarenaya hassleriana HOM05D001916 ORTHO05D003272 8.0e-06 55.1 231 21.6


User provided reference genes

Program Settings