Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 6.7e-248 860.1 407 100.0
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 1.8e-144 516.5 376 65.2
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 7.9e-140 501.1 375 62.9
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 1.6e-137 493.4 375 63.7
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 9.0e-136 487.6 376 61.7
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 2.5e-133 479.6 374 61.8
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 8.7e-131 471.1 376 58.2
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 1.6e-129 466.8 379 58.8
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 7.6e-127 458.0 377 56.0
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 1.7e-126 456.8 375 58.7
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 2.8e-121 439.5 388 54.1
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 2.8e-121 439.5 379 55.1
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 5.3e-120 435.3 374 57.0
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 6.9e-120 434.9 385 53.2
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 1.2e-119 434.1 376 56.9
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 2.0e-119 433.3 388 53.4
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 6.5e-118 428.3 383 53.0
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 8.5e-118 427.9 396 53.8
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 8.5e-118 427.9 373 55.5
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 1.1e-117 427.6 392 51.8
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 1.6e-116 423.7 392 51.5
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 2.1e-116 423.3 375 53.1
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 2.7e-116 422.9 384 52.9
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 1.5e-114 417.2 376 53.2
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 7.4e-114 414.8 396 50.5
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 9.7e-114 414.5 387 50.6
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 1.3e-113 414.1 387 50.4
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 1.3e-113 414.1 387 50.9
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 4.8e-113 412.1 387 50.1
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 2.4e-112 409.8 386 52.8
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 3.1e-112 409.5 387 50.4
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 3.1e-112 409.5 387 50.4
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 4.1e-112 409.1 387 50.4
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 9.1e-112 407.9 378 55.3
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 7.7e-111 404.8 385 50.6
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 7.9e-108 394.8 399 48.6
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 1.0e-107 394.4 379 50.9
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 1.4e-107 394.0 397 49.4
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 4.4e-106 389.0 378 50.0
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 5.7e-106 388.7 375 50.4
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 1.3e-105 387.5 367 51.5
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 3.1e-104 382.9 375 49.1
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 2.0e-103 380.2 365 52.3
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 1.7e-102 377.1 378 50.3
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 1.9e-101 373.6 374 50.0
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 4.7e-100 369.0 398 47.2
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 4.7e-100 369.0 380 50.0
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 1.0e-99 367.9 386 48.7
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 3.0e-99 366.3 385 47.0
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 1.3e-97 360.9 385 46.8
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 1.6e-95 354.0 375 48.5
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 1.0e-94 351.3 381 48.0
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 1.5e-93 347.4 410 44.9
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 2.2e-89 333.6 258 62.0
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 1.0e-86 324.7 394 42.6
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 2.2e-86 323.6 377 44.8
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 3.8e-86 322.8 446 41.7
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 2.5e-85 320.1 343 46.4
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 8.0e-84 315.1 394 43.7
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.0e-83 314.7 399 42.9
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 2.3e-83 313.5 403 42.7
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 3.0e-83 313.2 403 42.7
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 6.8e-83 312.0 399 42.6
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.2e-82 311.2 381 43.6
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.2e-82 311.2 386 43.5
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 2.0e-82 310.5 386 43.5
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 2.0e-82 310.5 386 43.5
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 3.4e-82 309.7 403 42.7
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 2.8e-81 306.6 387 43.9
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 1.1e-80 304.7 387 43.9
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 3.1e-80 303.1 404 41.8
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 9.1e-80 301.6 395 42.3
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 9.1e-80 301.6 378 43.1
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 1.2e-79 301.2 385 42.3
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 1.2e-79 301.2 386 42.7
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 4.5e-79 299.3 351 45.3
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 4.5e-79 299.3 408 41.2
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.3e-78 297.0 404 41.3
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 2.9e-78 296.6 388 41.5
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 5.0e-78 295.8 388 40.2
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 8.6e-78 295.0 394 40.6
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 4.7e-76 289.3 389 39.6
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 3.0e-75 286.6 332 47.0
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 5.2e-75 285.8 375 41.3
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 8.9e-75 285.0 384 40.9
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 8.9e-75 285.0 398 39.4
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 8.9e-75 285.0 398 39.4
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 2.0e-74 283.9 390 40.8
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 3.4e-74 283.1 403 39.7
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 3.4e-74 283.1 307 45.6
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 3.4e-74 283.1 394 40.4
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 4.4e-74 282.7 384 40.6
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 2.2e-73 280.4 386 40.7
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 2.8e-73 280.0 384 40.6
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 4.9e-73 279.3 388 40.7
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 6.3e-73 278.9 334 41.9
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 8.3e-73 278.5 384 40.1
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 1.4e-72 277.7 401 40.1
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 1.8e-72 277.3 390 40.8
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 2.4e-72 276.9 386 39.6
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 2.4e-72 276.9 383 39.9
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 1.6e-71 274.2 384 39.3
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 1.6e-71 274.2 383 38.9
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 5.9e-71 272.3 381 39.9
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 5.9e-71 272.3 235 54.0
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 1.3e-70 271.2 376 39.4
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 3.9e-70 269.6 383 38.4
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 1.5e-69 267.7 260 51.9
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 4.7e-68 262.7 383 38.4
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 1.0e-67 261.5 383 37.6
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 1.4e-67 261.2 400 38.8
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 1.8e-67 260.8 387 36.4
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 6.8e-67 258.8 387 36.4
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 6.8e-67 258.8 394 39.3
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 8.9e-67 258.5 291 45.7
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 2.6e-66 256.9 333 42.6
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 9.8e-66 255.0 387 36.2
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 3.7e-65 253.1 399 38.1
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 1.1e-64 251.5 398 38.7
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 2.7e-63 246.9 406 37.7
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 7.8e-63 245.4 303 42.9
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 1.3e-62 244.6 378 39.4
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 3.3e-61 240.0 396 37.4
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 4.3e-61 239.6 402 35.8
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 4.3e-61 239.6 487 32.6
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 1.6e-60 237.7 392 37.0
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 8.0e-60 235.3 389 38.6
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 1.4e-59 234.6 370 36.2
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 1.8e-59 234.2 394 36.8
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 1.8e-59 234.2 394 36.8
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 1.8e-59 234.2 399 36.8
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 8.9e-59 231.9 386 36.8
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 4.4e-58 229.6 397 34.3
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 9.8e-58 228.4 409 35.9
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 1.5e-53 214.5 412 35.0
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 2.3e-51 207.2 390 35.6
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 8.3e-49 198.7 380 33.7
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 1.6e-47 194.5 406 32.8
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.0e-46 191.8 256 39.8
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 5.1e-46 189.5 192 51.6
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 1.2e-44 184.9 383 31.3
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 3.6e-44 183.3 136 61.0
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 6.4e-41 172.6 228 43.0
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 9.3e-40 168.7 142 55.6
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 1.2e-39 168.3 293 37.2
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.7e-38 164.5 203 44.8
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 2.1e-36 157.5 299 34.4
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 6.4e-33 146.0 199 37.2
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 1.5e-29 134.8 282 34.8
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 4.9e-17 93.2 357 26.3
QL10p030172 Quercus lobata HOM05D004162 ORTHO05D004543 2.5e-16 90.9 68 64.7
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 4.6e-15 86.7 108 45.4
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 6.0e-15 86.3 61 59.0
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 6.0e-15 86.3 155 31.6
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 1.6e-12 78.2 131 38.9
VMungo0464G1157 Vigna mungo HOM05D004162 ORTHO05D004543 2.4e-11 74.3 97 42.3
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 3.4e-10 70.5 129 34.9
VMungo0464G1805 Vigna mungo HOM05D004162 ORTHO05D004543 5.8e-10 69.7 96 43.8
Lj1g0024684 Lotus japonicus HOM05D004162 ORTHO05D004543 1.9e-08 64.7 68 48.5
SHI19079 Sapria himalayana HOM05D004162 ORTHO05D004543 3.5e-07 60.5 65 46.2
Dinv32093 Davidia involucrata HOM05D004162 ORTHO05D004543 3.9e-06 57.0 49 55.1


User provided reference genes

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