Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 7.8e-269 929.9 461 100.0
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 3.4e-240 834.7 473 88.6
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 5.4e-238 827.4 473 87.9
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 1.0e-207 726.9 479 76.0
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.7e-207 726.1 473 74.6
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 6.5e-207 724.2 473 74.6
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.5e-206 722.2 473 75.7
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 7.2e-206 720.7 473 74.2
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 2.7e-205 718.8 471 76.0
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 2.7e-205 718.8 473 75.3
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 2.7e-205 718.8 473 74.8
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 4.6e-205 718.0 471 74.1
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 6.1e-205 717.6 473 74.6
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 7.9e-205 717.2 477 73.6
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 2.3e-204 715.7 470 73.8
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.1e-203 713.4 475 74.3
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 1.5e-203 713.0 471 75.6
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 2.5e-203 712.2 482 73.7
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 3.3e-203 711.8 469 74.4
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.6e-202 709.5 471 73.2
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 2.8e-202 708.8 460 76.1
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 8.2e-202 707.2 473 72.7
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 8.2e-202 707.2 448 76.8
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 3.1e-201 705.3 469 72.9
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 5.9e-200 701.0 473 72.7
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 7.7e-200 700.7 473 72.5
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 1.1e-198 696.8 471 72.2
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.4e-198 696.4 472 73.3
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 3.2e-198 695.3 473 71.9
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 4.2e-198 694.9 463 73.7
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 9.4e-198 693.7 471 71.8
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 1.2e-197 693.3 469 72.7
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 1.2e-197 693.3 488 70.3
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 1.6e-197 693.0 473 71.9
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 2.7e-197 692.2 467 72.6
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 4.6e-197 691.4 473 72.3
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 6.1e-197 691.0 471 71.3
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 1.0e-196 690.3 474 72.4
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.0e-196 690.3 481 71.1
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 1.0e-196 690.3 460 73.9
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 1.8e-196 689.5 469 73.3
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 2.3e-196 689.1 463 73.2
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 3.9e-196 688.3 473 71.0
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 1.1e-195 686.8 462 73.2
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 1.5e-195 686.4 473 70.8
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 2.0e-195 686.0 463 73.0
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 4.3e-195 684.9 473 71.7
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 5.7e-195 684.5 459 73.2
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 7.4e-195 684.1 471 70.3
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 1.7e-194 682.9 500 68.4
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 2.2e-194 682.6 500 68.6
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 3.7e-194 681.8 473 70.8
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 8.2e-194 680.6 473 70.6
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 2.4e-193 679.1 492 68.9
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 2.4e-193 679.1 448 73.4
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 2.4e-193 679.1 461 71.6
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 6.9e-193 677.6 464 70.5
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.0e-192 676.0 462 72.9
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 2.6e-192 675.6 472 69.7
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 1.3e-191 673.3 467 70.0
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 2.2e-191 672.5 462 69.9
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 2.2e-191 672.5 473 71.0
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.2e-191 672.5 456 71.7
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 2.2e-191 672.5 469 69.1
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 2.9e-191 672.2 467 70.4
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.8e-191 671.8 456 71.5
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.8e-191 671.8 456 71.5
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 5.0e-191 671.4 456 74.3
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 8.5e-191 670.6 465 70.5
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 2.5e-190 669.1 461 70.1
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 2.5e-190 669.1 519 65.3
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 4.2e-190 668.3 477 68.8
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 9.4e-190 667.2 469 69.9
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 9.4e-190 667.2 479 68.7
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 1.6e-189 666.4 458 71.4
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 2.3e-188 662.5 471 68.2
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 2.3e-188 662.5 490 68.4
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 3.0e-188 662.1 472 69.1
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 3.0e-188 662.1 472 69.1
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 3.0e-188 662.1 471 69.0
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 8.8e-188 660.6 471 68.8
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 2.0e-187 659.4 451 70.5
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.0e-187 659.4 455 73.2
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.6e-187 659.1 471 68.6
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 5.7e-187 657.9 451 70.3
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 7.4e-187 657.5 462 71.0
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 1.3e-186 656.8 465 68.6
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.3e-186 656.8 485 67.8
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 2.2e-186 656.0 469 67.6
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 2.2e-186 656.0 471 67.9
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 2.2e-186 656.0 451 70.1
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 2.2e-186 656.0 471 67.9
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 2.2e-186 656.0 471 66.9
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 2.8e-186 655.6 533 63.0
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 9.1e-185 650.6 466 68.5
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 9.1e-185 650.6 471 67.3
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 1.3e-183 646.7 469 65.7
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 1.3e-183 646.7 471 66.5
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.2e-183 646.0 471 67.3
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 3.8e-183 645.2 499 64.7
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 8.5e-183 644.0 498 63.3
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 3.2e-182 642.1 460 68.3
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 1.2e-181 640.2 469 65.2
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.7e-181 639.0 462 67.3
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 8.0e-181 637.5 479 67.4
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.7e-180 634.4 456 68.4
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 3.1e-177 625.5 459 66.9
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 9.1e-177 624.0 470 63.6
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.2e-176 623.6 603 55.7
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 1.2e-176 623.6 460 67.0
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 1.2e-176 623.6 461 67.7
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 4.5e-176 621.7 515 63.7
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 5.2e-172 608.2 459 68.4
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 7.7e-168 594.3 456 68.0
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 5.0e-167 591.7 463 63.5
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 3.0e-156 555.8 474 62.9
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.0e-155 553.1 366 75.4
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 2.3e-148 529.6 363 72.2
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 5.2e-148 528.5 460 59.3
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 5.6e-142 508.4 391 64.2
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 3.4e-139 499.2 350 71.4
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 7.8e-136 488.0 462 54.1
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.9e-134 483.4 463 54.9
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 3.3e-134 482.6 362 65.7
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 9.5e-134 481.1 468 53.0
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 6.8e-132 474.9 470 52.8
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 2.4e-129 466.5 370 65.7
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 4.6e-120 435.6 320 67.8
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 7.3e-118 428.3 326 66.0
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 1.6e-109 400.6 248 75.0
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 1.5e-107 394.0 269 73.2
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.4e-105 386.7 289 65.1
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 1.5e-99 367.5 481 43.5
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 2.5e-97 360.1 217 77.4
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 2.5e-97 360.1 472 43.4
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 1.8e-95 354.0 217 76.5
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 3.3e-94 349.7 276 63.8
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.7e-90 337.4 212 75.5
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 2.5e-89 333.6 244 67.6
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 7.2e-89 332.0 202 78.7
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 1.1e-86 324.7 202 77.2
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 6.3e-85 318.9 198 77.8
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 2.5e-81 307.0 199 75.4
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 4.2e-81 306.2 457 40.0
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.9e-79 299.7 198 75.8
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 5.0e-74 282.7 186 77.4
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 5.5e-73 279.3 459 37.3
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 2.6e-70 270.4 171 77.2
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 1.2e-62 245.0 274 47.4
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 4.4e-62 243.0 267 52.4
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 5.0e-58 229.6 504 31.9
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 6.1e-56 222.6 172 68.6
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 1.8e-55 221.1 154 68.8
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 2.8e-45 187.2 114 78.1
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 5.4e-44 183.0 280 40.7
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 3.6e-40 170.2 126 60.3
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 4.9e-37 159.8 119 69.7
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 4.1e-36 156.8 124 59.7
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 6.6e-34 149.4 311 36.3
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 8.6e-34 149.1 81 82.7
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 4.3e-33 146.7 153 52.9
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 4.7e-32 143.3 88 75.0
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 1.4e-31 141.7 88 75.0
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 5.2e-31 139.8 311 34.1
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.2e-30 138.7 80 80.0
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 2.9e-29 134.0 133 59.4
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 4.9e-29 133.3 126 53.2
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 7.0e-28 129.4 76 77.6
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 3.5e-27 127.1 77 79.2
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 5.0e-26 123.2 134 51.5
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 7.5e-22 109.4 63 79.4
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 1.3e-21 108.6 61 78.7
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 1.3e-21 108.6 62 79.0
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 1.7e-21 108.2 83 66.3
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 3.7e-21 107.1 81 66.7
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 1.1e-20 105.5 91 59.3
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 1.6e-19 101.7 74 60.8
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 5.6e-17 93.2 70 58.6
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 2.1e-16 91.3 52 76.9
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 3.5e-11 73.9 50 58.0
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 4.6e-11 73.6 129 35.7
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 6.0e-11 73.2 48 75.0
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.9e-09 68.2 110 40.9
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 4.3e-09 67.0 51 56.9
BcaC01g04986 Brassica carinata HOM05D002285 ORTHO05D004192 4.4e-06 57.0 31 83.9


User provided reference genes

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