Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 5.3e-96 354.4 181 100.0
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 2.3e-91 339.0 181 95.0
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 9.4e-77 290.4 177 81.9
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 7.9e-76 287.3 179 81.0
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 7.9e-76 287.3 180 79.4
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.1e-74 283.5 180 79.4
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.5e-74 283.1 177 78.0
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.5e-74 283.1 177 78.0
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 2.6e-74 282.3 180 81.1
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 2.6e-74 282.3 180 78.9
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 1.3e-73 280.0 180 78.3
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 1.7e-73 279.6 179 78.2
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 2.2e-73 279.3 178 79.8
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 3.7e-73 278.5 178 78.7
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 3.7e-73 278.5 178 79.2
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 3.7e-73 278.5 178 79.2
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 1.8e-72 276.2 179 77.7
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 1.2e-71 273.5 179 81.6
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 2.0e-71 272.7 175 77.7
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 3.5e-71 271.9 178 79.2
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 4.5e-71 271.6 179 78.2
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 4.5e-71 271.6 178 78.7
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 7.7e-71 270.8 178 79.2
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.0e-70 270.4 178 78.1
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 1.3e-70 270.0 177 76.8
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 2.2e-70 269.2 179 75.4
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 2.2e-70 269.2 179 75.4
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 3.8e-70 268.5 178 78.1
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 3.8e-70 268.5 179 76.0
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 5.0e-70 268.1 178 78.1
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.1e-69 266.9 178 77.5
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 1.4e-69 266.5 179 78.2
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.9e-69 266.2 172 79.7
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 2.5e-69 265.8 172 79.7
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.5e-69 265.8 172 79.7
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 2.5e-69 265.8 178 76.4
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 4.2e-69 265.0 175 76.0
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 7.2e-69 264.2 179 77.7
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.6e-68 263.1 172 79.1
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 2.1e-68 262.7 180 74.4
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.7e-68 262.3 177 73.4
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.6e-68 261.9 177 73.4
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 4.7e-68 261.5 167 80.8
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 4.7e-68 261.5 172 77.9
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 6.1e-68 261.2 172 78.5
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 1.0e-67 260.4 178 75.3
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.0e-67 260.4 177 76.8
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 1.4e-67 260.0 173 75.1
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 1.4e-67 260.0 176 75.6
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 1.4e-67 260.0 178 77.5
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 2.3e-67 259.2 177 75.1
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 3.0e-67 258.8 178 75.3
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 3.0e-67 258.8 172 77.9
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 3.0e-67 258.8 173 75.7
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 5.2e-67 258.1 177 72.9
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 5.2e-67 258.1 172 77.9
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 5.2e-67 258.1 178 74.7
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 6.7e-67 257.7 178 75.3
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 6.7e-67 257.7 174 77.0
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 6.7e-67 257.7 174 75.3
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 2.6e-66 255.8 179 74.9
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 4.4e-66 255.0 177 71.8
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 7.4e-66 254.2 177 75.7
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 1.3e-65 253.4 179 73.7
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 2.2e-65 252.7 173 75.7
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 2.8e-65 252.3 177 71.8
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 2.8e-65 252.3 171 74.9
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 4.8e-65 251.5 180 72.8
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 8.2e-65 250.8 174 74.7
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 1.1e-64 250.4 173 75.1
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 1.1e-64 250.4 173 72.8
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 1.4e-64 250.0 173 72.8
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 1.4e-64 250.0 177 72.9
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 1.8e-64 249.6 177 72.9
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 1.8e-64 249.6 177 72.9
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 2.4e-64 249.2 180 71.1
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 3.1e-64 248.8 177 72.3
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 3.1e-64 248.8 169 73.4
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 3.1e-64 248.8 169 73.4
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 4.1e-64 248.4 177 72.3
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 4.1e-64 248.4 177 72.3
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 5.3e-64 248.1 182 73.6
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 7.0e-64 247.7 173 73.4
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 7.0e-64 247.7 165 76.4
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 7.0e-64 247.7 169 74.6
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 9.1e-64 247.3 180 72.2
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 1.2e-63 246.9 180 70.6
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 2.0e-63 246.1 180 73.3
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 3.5e-63 245.4 188 67.6
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 5.9e-63 244.6 177 71.2
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 7.7e-63 244.2 174 71.8
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.0e-62 243.8 174 70.7
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 3.8e-62 241.9 178 69.7
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 8.5e-62 240.7 180 70.0
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 1.5e-61 240.0 139 84.2
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 4.2e-61 238.4 175 67.4
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 4.2e-61 238.4 177 68.4
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 4.2e-61 238.4 175 68.0
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 7.2e-61 237.7 186 67.7
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 1.2e-60 236.9 178 69.7
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 3.6e-60 235.3 177 67.8
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 3.6e-60 235.3 174 69.0
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 6.1e-60 234.6 174 69.0
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.4e-59 233.4 172 70.9
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 4.0e-59 231.9 171 71.9
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 4.0e-59 231.9 173 68.2
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 4.0e-59 231.9 174 66.7
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 5.2e-59 231.5 131 84.7
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 5.2e-59 231.5 176 68.2
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 8.8e-59 230.7 150 74.0
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 8.8e-59 230.7 174 71.3
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.2e-58 230.3 174 66.1
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 2.0e-58 229.6 177 68.9
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 9.7e-58 227.3 180 66.1
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 1.3e-57 226.9 181 65.7
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 2.2e-57 226.1 170 71.2
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 4.8e-57 224.9 135 80.7
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 6.3e-57 224.6 178 66.9
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 1.8e-56 223.0 176 66.5
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 7.0e-56 221.1 181 64.6
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 7.0e-56 221.1 173 68.8
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 7.0e-56 221.1 176 65.9
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 2.7e-55 219.2 152 72.4
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 7.7e-55 217.6 244 51.6
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 1.0e-54 217.2 157 71.3
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 1.3e-54 216.9 164 67.7
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 2.9e-54 215.7 132 81.8
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 6.5e-54 214.5 193 63.2
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 8.5e-54 214.2 137 77.4
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 2.1e-52 209.5 179 63.7
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 2.8e-49 199.1 177 62.1
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 5.4e-48 194.9 121 76.0
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 3.5e-47 192.2 179 56.4
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 3.8e-46 188.7 174 56.3
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 1.1e-45 187.2 143 59.4
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 1.2e-44 183.7 144 66.7
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 2.1e-44 183.0 180 53.3
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 4.7e-44 181.8 152 59.9
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 8.0e-44 181.0 193 53.9
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 2.8e-36 156.0 181 48.1
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 8.0e-36 154.5 89 79.8
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 4.0e-35 152.1 129 62.0
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 1.3e-33 147.1 116 66.4
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.7e-33 146.7 86 79.1
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.9e-33 145.2 86 77.9
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 7.0e-32 141.4 89 78.7
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 7.8e-31 137.9 159 47.8
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 1.0e-30 137.5 112 65.2
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 2.5e-29 132.9 117 62.4
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 1.2e-28 130.6 124 60.5
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 4.1e-24 115.5 128 47.7
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 8.6e-22 107.8 85 63.5
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.5e-21 107.1 84 70.2
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 1.9e-21 106.7 86 69.8
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 1.9e-21 106.7 86 69.8
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 3.3e-21 105.9 126 40.5
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 3.1e-19 99.4 107 43.9
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 1.3e-17 94.0 152 34.9
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.3e-14 84.0 46 80.4
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 9.6e-13 77.8 80 51.2
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 6.2e-12 75.1 68 58.8
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 1.4e-11 73.9 89 39.3
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 8.9e-11 71.2 85 49.4
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 5.8e-10 68.6 193 32.6
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.7e-09 67.0 71 56.3
Cc01_g11080 Coffea canephora HOM05D004222 ORTHO05D154025 1.3e-06 57.4 109 40.4


User provided reference genes

Program Settings