Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002621 Daucus carota HOM05D001891 ORTHO05D004048 5.9e-89 330.9 172 100.0
Lj3A852T54 Lonicera japonica HOM05D001891 ORTHO05D004048 8.7e-40 167.5 171 54.4
Actinidia00164 Actinidia chinensis HOM05D001891 ORTHO05D004048 2.6e-36 156.0 178 50.0
Dinv02385 Davidia involucrata HOM05D001891 ORTHO05D004048 6.5e-35 151.4 177 50.3
MBI06_g15670_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D004048 5.7e-31 138.3 177 48.0
TAR629G0018 Trochodendron aralioides HOM05D001891 ORTHO05D004048 5.7e-31 138.3 176 48.9
CDE07G1567 Ceratophyllum demersum HOM05D001891 ORTHO05D004048 9.7e-31 137.5 177 46.3
QL03p043045 Quercus lobata HOM05D001891 ORTHO05D004048 6.9e-29 131.3 164 49.4
Zm00001eb066610 Zea mays HOM05D001891 ORTHO05D004048 1.7e-27 126.7 168 44.6
CDE04G1330 Ceratophyllum demersum HOM05D001891 ORTHO05D004048 2.2e-27 126.3 176 42.6
HPP92_009055 Vanilla planifolia HOM05D001891 ORTHO05D004048 2.5e-26 122.9 172 43.0
Os04g0672800 Oryza sativa ssp. japonica HOM05D001891 ORTHO05D004048 4.2e-26 122.1 152 48.7
ATR0618G228 Amborella trichopoda HOM05D001891 ORTHO05D004048 2.1e-25 119.8 179 41.3
SEGI_12996 Sequoiadendron giganteum HOM05D001891 ORTHO05D004048 6.7e-24 114.8 174 40.8
MD17G1092700 Malus domestica HOM05D001891 ORTHO05D004048 8.7e-24 114.4 171 45.6
Lalb_Chr01g0005561 Lupinus albus HOM05D001891 ORTHO05D004048 1.5e-23 113.6 179 36.9
DCAR_012959 Daucus carota HOM05D001891 ORTHO05D004048 1.9e-23 113.2 155 45.2
Prupe.3G220500 Prunus persica HOM05D001891 ORTHO05D004048 1.9e-23 113.2 182 43.4
Ah.01g014600 Amaranthus hybridus HOM05D001891 ORTHO05D004048 3.3e-23 112.5 182 40.7
Hma1.2p1_0613F.1_g189170 Hydrangea macrophylla HOM05D001891 ORTHO05D004048 3.3e-23 112.5 172 39.5
FAN02G0497 Fragaria x ananassa HOM05D001891 ORTHO05D005832 4.3e-23 112.1 183 40.4
vmacro09324 Vaccinium macrocarpon HOM05D001891 ORTHO05D004048 4.3e-23 112.1 172 44.8
CSS0024189 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D004048 5.7e-23 111.7 172 40.7
Cpa.g.sc8.236 Carica papaya HOM05D001891 ORTHO05D004048 5.7e-23 111.7 147 42.2
ClCG02G008440 Citrullus lanatus HOM05D001891 ORTHO05D004048 5.7e-23 111.7 174 38.5
Eucgr.K00861 Eucalyptus grandis HOM05D001891 ORTHO05D004048 5.7e-23 111.7 177 41.2
CSS0049956 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D004048 7.4e-23 111.3 191 37.7
CsaV3_2G035190 Cucumis sativus L. HOM05D001891 ORTHO05D004048 7.4e-23 111.3 174 41.4
Dinv18531 Davidia involucrata HOM05D001891 ORTHO05D004048 7.4e-23 111.3 153 43.8
MD09G1105000 Malus domestica HOM05D001891 ORTHO05D004048 7.4e-23 111.3 171 44.4
Ciclev10016204m.g Citrus clementina HOM05D001891 ORTHO05D004048 9.7e-23 110.9 171 40.9
Thecc.02G162400 Theobroma cacao HOM05D001891 ORTHO05D004048 9.7e-23 110.9 184 35.9
FvH4_6g43550 Fragaria vesca HOM05D001891 ORTHO05D004048 1.3e-22 110.5 183 39.9
FAN14G5299 Fragaria x ananassa HOM05D001891 ORTHO05D005832 1.3e-22 110.5 183 39.9
FAN09G3447 Fragaria x ananassa HOM05D001891 ORTHO05D004048 1.7e-22 110.2 183 39.3
Sed0013568 Sechium edule HOM05D001891 ORTHO05D004048 1.7e-22 110.2 174 38.5
Sc12g0002390 Simmondsia chinensis HOM05D001891 ORTHO05D004048 1.7e-22 110.2 177 42.4
THA.LOC104808497 Tarenaya hassleriana HOM05D001891 ORTHO05D004048 1.7e-22 110.2 177 39.0
GSVIVG01030625001 Vitis vinifera HOM05D001891 ORTHO05D004048 1.7e-22 110.2 162 41.4
TAR629G3333 Trochodendron aralioides HOM05D001891 ORTHO05D004048 2.2e-22 109.8 178 39.3
arahy.Tifrunner.gnm1.ann1.NX9XDZ Arachis hypogaea HOM05D001891 ORTHO05D004048 2.8e-22 109.4 172 39.5
arahy.Tifrunner.gnm1.ann1.6C63SS Arachis hypogaea HOM05D001891 ORTHO05D004048 3.7e-22 109.0 169 39.1
arahy.Tifrunner.gnm1.ann1.MDYX4P Arachis hypogaea HOM05D001891 ORTHO05D004048 3.7e-22 109.0 169 39.1
BcaC01g03476 Brassica carinata HOM05D001891 ORTHO05D004048 3.7e-22 109.0 188 39.4
C03p52060 Brassica napus HOM05D001891 ORTHO05D004048 3.7e-22 109.0 188 39.4
Potri.017G038800 Populus trichocarpa HOM05D001891 ORTHO05D004048 3.7e-22 109.0 173 41.0
Manes.12G078400 Manihot esculenta HOM05D001891 ORTHO05D004048 4.8e-22 108.6 172 39.5
Nn1g06995 Nelumbo nucifera HOM05D001891 ORTHO05D004048 4.8e-22 108.6 156 42.9
EL10Ac9g20654 Beta vulgaris HOM05D001891 ORTHO05D004048 6.3e-22 108.2 142 45.8
Lj3g0025447 Lotus japonicus HOM05D001891 ORTHO05D004048 6.3e-22 108.2 174 40.8
Sabra17G0025800 Salix brachista HOM05D001891 ORTHO05D004048 6.3e-22 108.2 173 41.0
SalBow1G3276 Salvia bowleyana HOM05D001891 ORTHO05D004048 6.3e-22 108.2 144 45.8
TWI75G1691 Tripterygium wilfordii HOM05D001891 ORTHO05D004048 6.3e-22 108.2 172 39.5
DCAR_019211 Daucus carota HOM05D001891 ORTHO05D004048 8.2e-22 107.8 164 39.0
Dinv39686 Davidia involucrata HOM05D001891 ORTHO05D004048 1.1e-21 107.5 172 40.7
Glyma.12G195800 Glycine max HOM05D001891 ORTHO05D004048 1.1e-21 107.5 172 39.0
A01p33120 Brassica napus HOM05D001891 ORTHO05D004048 1.4e-21 107.1 174 38.5
BraA01t03435Z Brassica rapa HOM05D001891 ORTHO05D004048 1.4e-21 107.1 174 38.5
Mapoly0037s0074 Marchantia polymorpha HOM05D001891 ORTHO05D004048 1.4e-21 107.1 160 40.0
PSO675G1171 Papaver somniferum HOM05D001891 ORTHO05D004048 1.4e-21 107.1 155 41.3
Peaxi162Scf00007g01230 Petunia axillaris HOM05D001891 ORTHO05D004048 1.4e-21 107.1 167 41.3
Sed0022558 Sechium edule HOM05D001891 ORTHO05D004048 1.4e-21 107.1 170 41.8
arahy.Tifrunner.gnm1.ann1.CI1LQF Arachis hypogaea HOM05D001891 ORTHO05D004048 1.8e-21 106.7 156 41.0
Sed0020603 Sechium edule HOM05D001891 ORTHO05D004048 1.8e-21 106.7 172 36.6
Actinidia30510 Actinidia chinensis HOM05D001891 ORTHO05D004048 2.4e-21 106.3 187 37.4
BraA03t13403Z Brassica rapa HOM05D001891 ORTHO05D004048 2.4e-21 106.3 192 37.5
CANSAT64G0421 Cannabis sativa HOM05D001891 ORTHO05D004048 2.4e-21 106.3 172 40.1
Glyma.13G306700 Glycine max HOM05D001891 ORTHO05D004048 2.4e-21 106.3 174 39.1
CARHR097820 Cardamine hirsuta HOM05D001891 ORTHO05D004048 3.1e-21 105.9 149 44.3
CiPaw.04G117900 Carya illinoinensis HOM05D001891 ORTHO05D004048 3.1e-21 105.9 161 40.4
Gohir.D02G187000 Gossypium hirsutum HOM05D001891 ORTHO05D004048 3.1e-21 105.9 161 37.9
PSO541G4560 Papaver somniferum HOM05D001891 ORTHO05D004048 3.1e-21 105.9 155 43.2
Phvul.005G113600 Phaseolus vulgaris HOM05D001891 ORTHO05D004048 3.1e-21 105.9 145 42.8
RcHm_v2.0_Chr2g0160081 Rosa chinensis HOM05D001891 ORTHO05D004048 3.1e-21 105.9 171 41.5
Migut.M00394 Erythranthe guttata HOM05D001891 ORTHO05D004048 4.1e-21 105.5 167 40.7
Gohir.A03G163600 Gossypium hirsutum HOM05D001891 ORTHO05D004048 4.1e-21 105.5 161 37.9
Nitab4.5_0005894g0030 Nicotiana tabacum HOM05D001891 ORTHO05D009433 4.1e-21 105.5 171 40.9
BcaB06g26288 Brassica carinata HOM05D001891 ORTHO05D004048 5.3e-21 105.1 181 37.0
A03p42500 Brassica napus HOM05D001891 ORTHO05D004048 5.3e-21 105.1 192 35.9
CAN.G921.6 Capsicum annuum HOM05D001891 ORTHO05D004048 5.3e-21 105.1 171 41.5
Ca_27743_v3 Cicer arietinum L. HOM05D001891 ORTHO05D004048 5.3e-21 105.1 145 42.8
Lj3g0010899 Lotus japonicus HOM05D001891 ORTHO05D004048 5.3e-21 105.1 180 40.0
Nitab4.5_0001176g0130 Nicotiana tabacum HOM05D001891 ORTHO05D009433 5.3e-21 105.1 171 40.9
Psat5g265320 Pisum sativum HOM05D001891 ORTHO05D004048 5.3e-21 105.1 172 39.0
Solyc07g052600.3 Solanum lycopersicum HOM05D001891 ORTHO05D004048 5.3e-21 105.1 171 39.8
Sopen07g026210 Solanum pennellii HOM05D001891 ORTHO05D004048 5.3e-21 105.1 171 39.8
vmacro12228 Vaccinium macrocarpon HOM05D001891 ORTHO05D004048 5.3e-21 105.1 141 48.2
AUR62037141 Chenopodium quinoa HOM05D001891 ORTHO05D004048 6.9e-21 104.8 143 44.8
COL.COLO4_12984 Corchorus olitorius HOM05D001891 ORTHO05D005832 6.9e-21 104.8 161 37.9
Oeu052537.1 Olea europaea HOM05D001891 ORTHO05D004048 6.9e-21 104.8 170 38.8
VMungo1080G1612 Vigna mungo HOM05D001891 ORTHO05D004048 6.9e-21 104.8 172 37.8
BolC3t17487H Brassica oleracea HOM05D001891 ORTHO05D004048 9.1e-21 104.4 189 39.2
SMO356G0403 Selaginella moellendorffii HOM05D001891 ORTHO05D004048 9.1e-21 104.4 160 38.1
TPR.G4167 Trifolium pratense HOM05D001891 ORTHO05D004048 9.1e-21 104.4 145 42.8
Aa31LG8G8420 Aethionema arabicum HOM05D001891 ORTHO05D004048 1.2e-20 104.0 161 41.6
A05p26910 Brassica napus HOM05D001891 ORTHO05D004048 1.2e-20 104.0 181 39.8
BraA05t21571Z Brassica rapa HOM05D001891 ORTHO05D004048 1.2e-20 104.0 181 39.8
Actinidia12501 Actinidia chinensis HOM05D001891 ORTHO05D004048 1.5e-20 103.6 156 39.7
Oeu011080.1 Olea europaea HOM05D001891 ORTHO05D004048 1.5e-20 103.6 151 41.1
Sp3g19830 Schrenkiella parvula HOM05D001891 ORTHO05D004048 1.5e-20 103.6 161 39.8
Actinidia32079 Actinidia chinensis HOM05D001891 ORTHO05D004048 2.0e-20 103.2 156 41.0
Duzib248G1135 Durio zibethinus HOM05D001891 ORTHO05D004048 2.0e-20 103.2 159 39.6
Lsat_1_v5_gn_8_129400 Lactuca sativa HOM05D001891 ORTHO05D004048 2.0e-20 103.2 171 39.2
Sabra07G0098300 Salix brachista HOM05D001891 ORTHO05D004048 2.0e-20 103.2 173 39.9
CiPaw.03G163000 Carya illinoinensis HOM05D001891 ORTHO05D004048 2.6e-20 102.8 173 40.5
AUR62025059 Chenopodium quinoa HOM05D001891 ORTHO05D004048 2.6e-20 102.8 143 44.1
Duzib052G0734 Durio zibethinus HOM05D001891 ORTHO05D004048 2.6e-20 102.8 161 37.9
QL08p033836 Quercus lobata HOM05D001891 ORTHO05D004048 2.6e-20 102.8 179 39.1
ClCG02G001770 Citrullus lanatus HOM05D001891 ORTHO05D004048 3.4e-20 102.4 174 39.7
Gohir.D12G138400 Gossypium hirsutum HOM05D001891 ORTHO05D004048 3.4e-20 102.4 161 41.6
Lj1A756G86 Lonicera japonica HOM05D001891 ORTHO05D004048 3.4e-20 102.4 138 43.5
SalBow7G2009 Salvia bowleyana HOM05D001891 ORTHO05D004048 3.4e-20 102.4 172 41.3
AagrBONN_evm.TU.Sc2ySwM_362.2694 Anthoceros agrestis HOM05D001891 ORTHO05D004048 4.5e-20 102.1 164 41.5
CAN.G80.19 Capsicum annuum HOM05D001891 ORTHO05D004048 4.5e-20 102.1 146 44.5
Migut.H01220 Erythranthe guttata HOM05D001891 ORTHO05D004048 4.5e-20 102.1 163 39.9
C05p41520 Brassica napus HOM05D001891 ORTHO05D004048 5.9e-20 101.7 181 36.5
BolC5t32890H Brassica oleracea HOM05D001891 ORTHO05D004048 5.9e-20 101.7 181 36.5
Cfa014439 Carpinus fangiana HOM05D001891 ORTHO05D005832 5.9e-20 101.7 149 40.9
Rhsim04G0056600 Rhododendron simsii HOM05D001891 ORTHO05D004048 5.9e-20 101.7 172 41.3
vmacro10802 Vaccinium macrocarpon HOM05D001891 ORTHO05D004048 5.9e-20 101.7 138 49.3
Zm00001eb069570 Zea mays HOM05D001891 ORTHO05D004048 5.9e-20 101.7 143 44.1
BcaC05g28120 Brassica carinata HOM05D001891 ORTHO05D004048 7.7e-20 101.3 143 42.0
CsaV3_7G003770 Cucumis sativus L. HOM05D001891 ORTHO05D004048 7.7e-20 101.3 153 41.2
Duzib132G0769 Durio zibethinus HOM05D001891 ORTHO05D004048 7.7e-20 101.3 161 36.6
Gorai.005G209300 Gossypium raimondii HOM05D001891 ORTHO05D004048 7.7e-20 101.3 162 37.7
Gorai.008G149900 Gossypium raimondii HOM05D001891 ORTHO05D004048 7.7e-20 101.3 162 38.9
TWI18G0897 Tripterygium wilfordii HOM05D001891 ORTHO05D004048 7.7e-20 101.3 172 40.1
MSTRG.14154 Avicennia marina HOM05D001891 ORTHO05D004048 1.0e-19 100.9 173 38.2
Cc05_g05140 Coffea canephora HOM05D001891 ORTHO05D004048 1.0e-19 100.9 170 41.2
Nitab4.5_0000631g0040 Nicotiana tabacum HOM05D001891 ORTHO05D004048 1.0e-19 100.9 168 36.9
AT3G21865 Arabidopsis thaliana HOM05D001891 ORTHO05D004048 1.7e-19 100.1 152 40.8
THA.LOC104802537 Tarenaya hassleriana HOM05D001891 ORTHO05D004048 1.7e-19 100.1 161 37.3
MSTRG.12288 Avicennia marina HOM05D001891 ORTHO05D004048 2.2e-19 99.8 171 39.8
Thhalv10021287m.g Eutrema salsugineum HOM05D001891 ORTHO05D004048 2.2e-19 99.8 163 37.4
Lalb_Chr03g0028901 Lupinus albus HOM05D001891 ORTHO05D004048 2.2e-19 99.8 168 39.3
PSO063G3135 Papaver somniferum HOM05D001891 ORTHO05D004048 2.2e-19 99.8 69 69.6
SGA_v2.0_scaffold49G18333 Striga asiatica HOM05D001891 ORTHO05D004048 2.2e-19 99.8 168 41.7
TAR627G0099 Trochodendron aralioides HOM05D001891 ORTHO05D004048 2.9e-19 99.4 148 42.6
Gohir.A12G134800 Gossypium hirsutum HOM05D001891 ORTHO05D004048 3.8e-19 99.0 161 37.3
Zm00001eb431430 Zea mays HOM05D001891 ORTHO05D004048 3.8e-19 99.0 143 45.5
Atru.chr6.3149 Acer truncatum HOM05D001891 ORTHO05D004048 6.5e-19 98.2 173 39.9
Haze_12898 Corylus avellana HOM05D001891 ORTHO05D004048 6.5e-19 98.2 147 40.8
Hma1.2p1_0439F.1_g153260 Hydrangea macrophylla HOM05D001891 ORTHO05D004048 6.5e-19 98.2 159 39.6
Lj8A122T60 Lonicera japonica HOM05D001891 ORTHO05D004048 6.5e-19 98.2 147 40.1
Oeu041959.1 Olea europaea HOM05D001891 ORTHO05D004048 6.5e-19 98.2 158 42.4
Potri.007G121600 Populus trichocarpa HOM05D001891 ORTHO05D004048 8.5e-19 97.8 173 38.7
C01p42350 Brassica napus HOM05D001891 ORTHO05D004048 1.1e-18 97.4 165 37.0
MELO3C018802.2 Cucumis melo HOM05D001891 ORTHO05D004048 1.1e-18 97.4 164 36.6
Aqoxy4G02099 Aquilegia oxysepala HOM05D001891 ORTHO05D004048 1.4e-18 97.1 69 66.7
BcaB04g19187 Brassica carinata HOM05D001891 ORTHO05D004048 1.9e-18 96.7 164 38.4
Os04g0629000 Oryza sativa ssp. japonica HOM05D001891 ORTHO05D004048 3.2e-18 95.9 143 44.1
Solyc12g005760.2 Solanum lycopersicum HOM05D001891 ORTHO05D004048 4.2e-18 95.5 173 38.2
Aqoxy4G02095 Aquilegia oxysepala HOM05D001891 ORTHO05D004048 5.5e-18 95.1 165 36.4
Carub.0003s2193 Capsella rubella HOM05D001891 ORTHO05D004048 5.5e-18 95.1 150 39.3
Medtr2g088850 Medicago truncatula HOM05D001891 ORTHO05D004048 5.5e-18 95.1 145 42.1
Sopen12g001680 Solanum pennellii HOM05D001891 ORTHO05D004048 5.5e-18 95.1 176 38.1
HanXRQChr17g0560941 Helianthus annuus HOM05D001891 ORTHO05D004048 7.2e-18 94.7 145 40.7
Pp3c3_16800 Physcomitrium patens HOM05D001891 ORTHO05D004048 9.4e-18 94.4 171 33.9
Pp3c3_16810 Physcomitrium patens HOM05D001891 ORTHO05D004048 9.4e-18 94.4 171 33.9
SGA_v2.0_scaffold70G23420 Striga asiatica HOM05D001891 ORTHO05D004048 1.2e-17 94.0 147 40.1
AL3G36020 Arabidopsis lyrata HOM05D001891 ORTHO05D004048 2.7e-17 92.8 151 38.4
BcaC09g49129 Brassica carinata HOM05D001891 ORTHO05D004048 3.6e-17 92.4 70 64.3
BcaC09g49127 Brassica carinata HOM05D001891 ORTHO05D004048 4.7e-17 92.0 134 42.5
ECA233G3416 Erigeron canadensis HOM05D000014 ORTHO05D000093 4.7e-17 92.0 145 40.0
BcaC09g49125 Brassica carinata HOM05D001891 ORTHO05D004048 6.1e-17 91.7 161 36.6
unitig_21.g20003 Utricularia gibba HOM05D001891 ORTHO05D004048 6.1e-17 91.7 163 36.8
BcaC09g49122 Brassica carinata HOM05D001891 ORTHO05D004048 7.9e-17 91.3 166 36.1
BolC1t04190H Brassica oleracea HOM05D001891 ORTHO05D004048 7.9e-17 91.3 166 36.1
Lsat_1_v5_gn_3_43721 Lactuca sativa HOM05D001891 ORTHO05D004048 1.0e-16 90.9 160 36.9
HPP92_004139 Vanilla planifolia HOM05D001891 ORTHO05D004048 1.4e-16 90.5 144 39.6
MELO3C019235.2 Cucumis melo HOM05D001891 ORTHO05D004048 3.0e-16 89.4 110 43.6
HanXRQChr15g0479201 Helianthus annuus HOM05D001891 ORTHO05D004048 6.7e-16 88.2 165 37.0
HanXRQChr10g0297471 Helianthus annuus HOM05D001891 ORTHO05D004048 1.1e-15 87.4 168 36.3
Sabra08G0110200 Salix brachista HOM05D001891 ORTHO05D004048 2.0e-15 86.7 216 32.9
unitig_578.g16774 Utricularia gibba HOM05D001891 ORTHO05D004048 9.7e-15 84.3 147 36.7
Nitab4.5_0006207g0030 Nicotiana tabacum HOM05D001891 ORTHO05D004048 2.8e-14 82.8 197 32.0
Ah.01g003690 Amaranthus hybridus HOM05D001891 ORTHO05D004048 3.7e-14 82.4 131 44.3
MBI03_g22259_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D004048 3.1e-13 79.3 184 35.9
Lsat_1_v5_gn_4_69321 Lactuca sativa HOM05D001891 ORTHO05D004048 2.2e-11 73.2 57 61.4
PGR142G0845 Punica granatum HOM05D001891 ORTHO05D004048 2.5e-10 69.7 160 31.9
CSS0035637 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D004048 3.2e-10 69.3 101 39.6
CSS0016042 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D004048 9.4e-10 67.8 101 39.6
CSS0039018 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D004048 3.3e-07 59.3 104 37.5
Aa31LG9G2160 Aethionema arabicum HOM05D001891 ORTHO05D004048 5.7e-07 58.5 70 42.9
SEGI_18604 Sequoiadendron giganteum HOM05D001891 ORTHO05D004048 2.8e-06 56.2 49 53.1
BcaB04g20555 Brassica carinata HOM05D001891 ORTHO05D004048 4.8e-06 55.5 130 30.0


User provided reference genes

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