Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002596 Daucus carota HOM05D006001 ORTHO05D006714 8.2e-76 287.0 143 100.0
DCAR_000919 Daucus carota HOM05D006001 ORTHO05D006714 1.7e-73 279.3 143 97.2
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 5.2e-62 241.1 138 87.0
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 1.2e-18 97.1 154 42.9
Rhsim07G0212300 Rhododendron simsii HOM05D006001 ORTHO05D006714 1.6e-15 86.7 124 46.0
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 2.6e-13 79.3 163 36.8
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 1.7e-12 76.6 164 39.0
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 2.2e-12 76.3 178 36.5
Gohir.D05G322800 Gossypium hirsutum HOM05D006001 ORTHO05D006714 8.3e-12 74.3 148 41.9
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 8.3e-12 74.3 146 41.1
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 1.1e-11 73.9 103 50.5
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 1.4e-11 73.6 167 37.7
Gorai.009G346500 Gossypium raimondii HOM05D006001 ORTHO05D006714 2.4e-11 72.8 148 41.9
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 3.2e-11 72.4 172 36.6
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 5.4e-11 71.6 175 34.3
Gohir.A05G320600 Gossypium hirsutum HOM05D006001 ORTHO05D006714 5.4e-11 71.6 148 39.9
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 5.4e-11 71.6 172 36.0
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 5.4e-11 71.6 178 35.4
THA.LOC104806890 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 7.1e-11 71.2 148 37.8
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 3.5e-10 68.9 93 48.4
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 6.0e-10 68.2 157 38.9
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 1.3e-09 67.0 155 38.7
SGA_v2.0_scaffold24G10238 Striga asiatica HOM05D006001 ORTHO05D006714 1.7e-09 66.6 75 56.0
Aqoxy5G01371 Aquilegia oxysepala HOM05D006001 ORTHO05D006714 3.0e-09 65.9 159 34.6
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 3.0e-09 65.9 96 45.8
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 3.0e-09 65.9 159 38.4
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 3.9e-09 65.5 125 40.8
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 3.9e-09 65.5 147 40.1
Aa31LG4G9600 Aethionema arabicum HOM05D006001 ORTHO05D006714 5.1e-09 65.1 91 44.0
FAN13G1830 Fragaria x ananassa HOM05D006001 ORTHO05D006714 5.1e-09 65.1 164 34.1
SalBow7G4402 Salvia bowleyana HOM05D006001 ORTHO05D006714 5.1e-09 65.1 83 44.6
PGSC0003DMG400009339 Solanum tuberosum HOM05D006001 ORTHO05D006714 5.1e-09 65.1 93 47.3
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 8.6e-09 64.3 163 35.6
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 1.1e-08 63.9 96 44.8
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 1.1e-08 63.9 100 44.0
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 1.1e-08 63.9 169 33.7
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 1.1e-08 63.9 137 40.9
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 1.5e-08 63.5 93 45.2
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 1.5e-08 63.5 153 35.9
Oeu034401.1 Olea europaea HOM05D006001 ORTHO05D006714 1.5e-08 63.5 85 52.9
Solyc04g076410.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 1.5e-08 63.5 130 36.9
PGSC0003DMG400002050 Solanum tuberosum HOM05D006001 ORTHO05D006714 1.5e-08 63.5 134 38.8
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 1.9e-08 63.2 96 47.9
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 1.9e-08 63.2 163 35.6
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 1.9e-08 63.2 147 40.8
Solyc12g087990.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 1.9e-08 63.2 91 49.5
Sopen04g030170 Solanum pennellii HOM05D006001 ORTHO05D006714 1.9e-08 63.2 130 36.9
FAN08G3160 Fragaria x ananassa HOM05D006001 ORTHO05D006714 2.5e-08 62.8 165 31.5
HanXRQChr03g0093751 Helianthus annuus HOM05D006001 ORTHO05D006714 2.5e-08 62.8 144 36.8
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 3.3e-08 62.4 148 37.8
Lsat_1_v5_gn_3_133380 Lactuca sativa HOM05D006001 ORTHO05D006714 3.3e-08 62.4 144 37.5
C07p53620 Brassica napus HOM05D006001 ORTHO05D006714 4.3e-08 62.0 93 44.1
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 4.3e-08 62.0 99 44.4
Actinidia19626 Actinidia chinensis HOM05D006001 ORTHO05D006714 5.6e-08 61.6 90 48.9
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 5.6e-08 61.6 150 38.7
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 7.3e-08 61.2 97 45.4
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 1.2e-07 60.5 101 43.6
Cc00_g15770 Coffea canephora HOM05D006001 ORTHO05D006714 1.2e-07 60.5 122 36.9
Lj4A738G22 Lonicera japonica HOM05D006001 ORTHO05D006714 1.2e-07 60.5 87 46.0
Hund26817 Selenicereus undatus HOM05D006001 ORTHO05D006714 1.2e-07 60.5 138 33.3
Nn5g29866 Nelumbo nucifera HOM05D006001 ORTHO05D006714 1.6e-07 60.1 96 43.8
SGA_v2.0_scaffold20G09128 Striga asiatica HOM05D006001 ORTHO05D006714 1.6e-07 60.1 159 35.8
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 2.1e-07 59.7 75 49.3
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 2.1e-07 59.7 150 40.0
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 2.8e-07 59.3 107 39.3
EL10Ac1g00506 Beta vulgaris HOM05D034668 ORTHO05D006714 3.6e-07 58.9 136 36.0
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 3.6e-07 58.9 130 40.0
unitig_578.g16728 Utricularia gibba HOM05D006001 ORTHO05D006714 4.7e-07 58.5 102 43.1
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 6.2e-07 58.2 164 34.1
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 8.1e-07 57.8 148 38.5
RcHm_v2.0_Chr7g0235791 Rosa chinensis HOM05D006001 ORTHO05D006714 1.1e-06 57.4 169 33.7
SEGI_15482 Sequoiadendron giganteum HOM05D006001 ORTHO05D006714 1.1e-06 57.4 79 45.6
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 1.8e-06 56.6 89 44.9
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 1.8e-06 56.6 93 41.9
Migut.C00706 Erythranthe guttata HOM05D006001 ORTHO05D006714 2.4e-06 56.2 73 50.7
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 3.1e-06 55.8 147 36.7
BraA03t14592Z Brassica rapa HOM05D006001 ORTHO05D006714 3.1e-06 55.8 99 43.4
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 3.1e-06 55.8 95 42.1
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 3.1e-06 55.8 176 30.7
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 4.0e-06 55.5 159 35.2
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 5.2e-06 55.1 146 33.6
Medtr5g066450 Medicago truncatula HOM05D006001 ORTHO05D006714 6.8e-06 54.7 144 36.1
Lalb_Chr17g0344581 Lupinus albus HOM05D006001 ORTHO05D006714 8.9e-06 54.3 141 34.8
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 8.9e-06 54.3 182 32.4


User provided reference genes

Program Settings