Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 0.0e+00 1162.5 569 100.0
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 4.0e-307 1057.4 569 89.3
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 6.2e-300 1033.5 580 85.9
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 4.0e-299 1030.8 580 85.5
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 7.5e-298 1026.5 581 85.0
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 1.3e-297 1025.8 588 84.5
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 1.9e-296 1021.9 565 86.4
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 1.3e-294 1015.8 584 84.1
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 3.0e-294 1014.6 578 83.7
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 6.6e-294 1013.4 580 84.8
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 8.6e-294 1013.1 545 89.4
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 8.6e-294 1013.1 568 85.7
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 1.1e-293 1012.7 578 84.4
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 1.1e-293 1012.7 569 85.2
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 1.5e-293 1012.3 582 83.7
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 1.9e-293 1011.9 582 84.0
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 7.3e-293 1010.0 575 84.2
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 2.8e-292 1008.1 571 84.1
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 4.7e-292 1007.3 578 84.1
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 6.2e-292 1006.9 589 83.0
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 8.1e-292 1006.5 582 83.5
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 8.1e-292 1006.5 571 83.4
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 2.3e-291 1005.0 579 83.9
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 4.0e-291 1004.2 566 84.5
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 4.0e-291 1004.2 575 83.8
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 5.2e-291 1003.8 571 83.4
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 2.0e-290 1001.9 589 82.9
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 7.5e-290 1000.0 593 82.3
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 1.3e-289 999.2 572 83.6
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.7e-289 998.8 582 83.0
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 1.7e-289 998.8 575 83.1
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 2.9e-289 998.0 581 83.1
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 3.7e-289 997.7 567 83.8
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 6.4e-289 996.9 546 87.0
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 8.3e-289 996.5 571 84.9
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 8.3e-289 996.5 581 83.1
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 1.9e-288 995.3 628 78.2
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 3.2e-288 994.6 574 82.8
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 3.2e-288 994.6 577 83.2
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 3.2e-288 994.6 575 83.3
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 7.1e-288 993.4 564 83.7
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 9.2e-288 993.0 577 82.8
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 9.2e-288 993.0 577 82.8
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 9.2e-288 993.0 577 83.0
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 1.2e-287 992.6 567 82.7
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 1.6e-287 992.3 560 85.7
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 1.6e-287 992.3 581 82.4
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 2.7e-287 991.5 567 82.7
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 1.3e-286 989.2 572 82.5
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 5.1e-286 987.3 578 82.5
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 1.1e-285 986.1 563 82.9
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.5e-285 985.7 569 82.1
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 1.5e-285 985.7 563 83.5
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.9e-285 985.3 578 82.7
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 1.9e-285 985.3 579 82.6
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 4.3e-285 984.2 577 82.5
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 1.6e-284 982.2 547 84.6
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 2.8e-284 981.5 583 82.0
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 4.7e-284 980.7 580 80.7
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 4.7e-284 980.7 576 80.9
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 4.7e-284 980.7 551 86.6
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 4.7e-284 980.7 582 80.8
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 4.7e-284 980.7 563 82.6
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 6.2e-284 980.3 578 82.2
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 6.2e-284 980.3 554 84.1
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 8.1e-284 979.9 574 81.2
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 4.0e-283 977.6 544 85.3
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 6.8e-283 976.9 546 84.8
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 8.9e-283 976.5 564 82.4
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 1.5e-282 975.7 596 79.0
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 5.8e-282 973.8 566 82.3
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 2.2e-281 971.8 567 81.7
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 2.2e-281 971.8 528 88.6
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 4.9e-281 970.7 569 82.8
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 6.4e-281 970.3 572 82.2
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 6.4e-281 970.3 564 82.4
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 8.4e-281 969.9 569 81.0
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 1.4e-280 969.1 567 81.8
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 3.2e-280 968.0 583 79.4
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 4.1e-280 967.6 571 81.1
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 9.2e-280 966.5 546 83.5
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 2.1e-279 965.3 566 80.4
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 3.5e-279 964.5 570 79.5
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 3.5e-279 964.5 543 84.0
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 3.5e-279 964.5 569 79.6
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 3.5e-279 964.5 569 79.4
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 4.6e-279 964.1 566 80.0
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 7.8e-279 963.4 670 72.5
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 1.0e-278 963.0 566 80.2
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 5.1e-278 960.7 558 83.0
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 5.1e-278 960.7 566 80.6
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 5.6e-277 957.2 566 79.9
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 1.6e-276 955.7 571 79.3
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 5.2e-275 950.7 569 79.3
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 8.9e-275 949.9 569 79.3
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 1.2e-274 949.5 543 82.3
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 3.4e-274 948.0 569 78.9
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 1.3e-273 946.0 569 78.9
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 1.9e-272 942.2 531 83.6
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 4.2e-272 941.0 566 79.5
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 4.2e-272 941.0 566 79.7
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 6.2e-268 927.2 565 78.6
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 3.4e-266 921.4 546 80.0
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 3.0e-262 908.3 532 80.3
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 1.9e-261 905.6 564 77.0
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 5.6e-261 904.0 559 78.2
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 1.3e-260 902.9 572 76.4
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 2.8e-260 901.7 572 76.2
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 4.8e-260 901.0 547 78.2
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 3.0e-254 881.7 572 75.9
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.8e-251 872.5 565 76.6
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 2.4e-251 872.1 549 75.4
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 5.8e-250 867.5 482 85.7
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 3.8e-249 864.8 563 73.9
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 4.5e-242 841.3 448 90.4
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 1.9e-237 825.9 448 87.9
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 1.4e-235 819.7 514 77.0
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 5.9e-234 814.3 560 73.0
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 2.9e-233 812.0 547 69.5
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 2.3e-230 802.4 549 69.9
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.5e-229 799.7 439 87.0
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 5.7e-229 797.7 555 68.1
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 5.0e-209 731.5 520 69.8
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.2e-205 720.3 472 75.8
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 2.0e-194 682.9 451 72.9
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 3.0e-185 652.5 538 59.5
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 6.4e-180 634.8 361 82.3
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 1.2e-170 604.0 344 83.7
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 1.4e-163 580.5 566 57.4
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 3.3e-152 542.7 541 55.5
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 1.4e-147 527.3 324 78.7
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 7.9e-146 521.5 418 65.6
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 1.8e-145 520.4 278 89.2
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 1.1e-144 517.7 565 49.0
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 4.0e-142 509.2 280 84.6
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 2.6e-133 479.9 291 79.4
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.3e-116 424.5 574 44.3
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 1.6e-114 417.5 288 69.4
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 9.7e-96 355.1 654 36.2
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 8.5e-92 342.0 184 86.4
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 1.5e-91 341.3 263 69.2
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 2.9e-84 317.0 188 77.1
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 3.8e-84 316.6 179 84.9
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.1e-83 315.1 179 84.4
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 2.1e-82 310.8 595 36.5
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 3.6e-82 310.1 167 88.6
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 1.5e-80 304.7 499 37.7
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.0e-76 292.0 587 34.8
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 7.5e-72 275.8 321 50.2
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 5.0e-68 263.1 140 88.6
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 4.3e-67 260.0 610 33.1
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 8.3e-63 245.7 159 72.3
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 5.1e-60 236.5 600 30.3
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 3.5e-53 213.8 117 84.6
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 1.7e-47 194.9 120 82.5
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 9.2e-46 189.1 107 84.1
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 1.9e-43 181.4 100 86.0
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 9.9e-40 169.1 208 47.6
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 8.4e-39 166.0 111 71.2
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.2e-31 141.4 91 74.7
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 4.9e-31 140.2 95 71.6
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 1.3e-28 132.1 65 93.8
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 6.7e-28 129.8 67 83.6
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 1.1e-27 129.0 137 49.6
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 1.5e-27 128.6 77 75.3
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 3.7e-18 97.4 64 75.0
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 5.7e-11 73.6 54 64.8
Actinidia39373 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.6e-10 72.0 58 60.3
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 1.1e-09 69.3 78 53.8
RcHm_v2.0_Chr5g0079041 Rosa chinensis HOM05D004119 ORTHO05D004797 1.8e-09 68.6 68 54.4
HanXRQChr13g0426091 Helianthus annuus HOM05D004119 ORTHO05D004797 3.4e-08 64.3 38 71.1
BraA01t00507Z Brassica rapa HOM05D004119 ORTHO05D004797 8.5e-07 59.7 52 57.7


User provided reference genes

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